Information report for Bra035858
Gene Details
Functional Annotation
- RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.
Homologous
- Actinidia chinensis: CEY00_Acc26765, CEY00_Acc22022
- Brassica napus: BnaC09G0076100ZS, BnaC03G0546700ZS, BnaA06G0283600ZS, BnaA09G0082600ZS
- Brassica oleracea: Bo9g017510, Bo3g104750
- Capsicum annuum: T459_32871
- Cucumis sativus: CsGy1G001130
- Gossypium hirsutum: Gohir.A03G061700, Gohir.D03G104300
- Solanum tuberosum: PGSC0003DMG400026989
- Vitis vinifera: VIT_17s0000g09070
Gene Resources
- Pfam: PF00850
- UniProt: A0A078FUS7
- RefSeq: XP_013658027.1
- EMBL: HG994363 , LK032067
- AlphaFoldDB: A0A078FUS7
- KEGG: bna:106362718
- OMA: NIPLMMV
- InterPro: IPR000286 , IPR003084 , IPR023696 , IPR023801 , IPR037138 , IPR050284
- PANTHER: PTHR10625 , PTHR10625:SF16
- SUPFAM: SSF52768
- Gene3D: 3.40.800.20
- OrthoDB: A0A078FUS7
- SMR: A0A078FUS7
- CDD: cd09991
- STRING: 3708.A0A078FUS7
Sequences
gDNA Sequence
- >Bra035858
TAAGAGGATGGTGGATTCACTTCAGGCTCATCTTCCATATCATCTTCACCAGTAGAGTCCCTGAAGATTCAAAGAGTTTTAAATTTAAGTTCTCAAGGCATCTCAAAGGTTTGGTTAGATTGAAGTAGGAAGAAGCTTTTTTAATTACCTGTCCATAGGTGGGTCATTAATACCCGAGTAACCAACAAGGGGTGGTGATTTCTCATCATCGTCACTGTCTGATTCATAATTCGCAGTTCCACTCCAAATCCGAGGCTTTGGTCTTTCCTCCAAGTCTTCTTCCGGCTAAAAAGATTAGAGAGACAAACAAAATATATCTAATGAGTCTGTCCCCAATAGAGAGCATGAGAGAGAGATATATACATCAATGGATGATTGAATTTTTTACCTCATCCAAAACTCTATTCACTGGAGGTGTGTGCTGAAACTGCACGCTAGGTGCGTGTATTAGTCCCGAAAGTTGCTCTAGCAATGTGTTCCTGAAAAATTCAAAAGTTTAACTTGACCAAGTTCAAAAGATCCCATTGACAAGCCAAGGAGATTCACAAGCCATAAGCTATGAGGATGTAAGCAAAAAGATAGAATCCTAAGTTGCATTGAGAGCATGCACGACTTCCTCGAATTGCATTAATCATAAGAAGGGGTAGCAGGAGATGTTACCTTATCTTCTCCATATCTTTTGGTGTGTTCAAATTCTCCATTGGGCCTGGATCGACGTGAAGCGTATAGTCTGGACCGAAATACTCAAAGTACTCATTGTACGGGAGCTTATTGTCCGGCTCTACTCCAACCGCAACTGCAGTCTGCAACAAGTCAACAGAAAAAAAACTTTCAAGAACAATATGTTTACCAACAAGTATAGAAGTGAAAGAGAGATGAAAAGACCTCATAACACCAGCAACGGGCAACATTTCGTATAGTATACCCTCCACCACCCAAGACCATGAGAGGAACGTTGAAAGATCTCAAGAACCGGAGGCAATCAGCATGACCCTTGACTGATAAGTTAAAGCAACCCAAACGATCACCGCTTAACGAGTCAGCCCCGCACTGAAGAACGACTGCCTCTGGCTGATACACATCCATAACCTTCTGGATAAGAGGTCTAAACATGCTGCGGAAACTCTCATCGTCCATACCATCGTTTAATGGAACATTTAGAGCGTAGTATTTCCCTTTCTCAGCGCCAATGTCTCTGATGTGACCAGTTCCTGGGAAAAAGTCTCCGAACTTGTGAAAAGAAACTGTCATAACTCTGTCGGTGGTGTAAAACGCTTCTTCTACTCCATCTCCATGGTGCACATCGATATCAACGTAGAGAACTCGCTGCAAACAAAAATATGATGAAAGCATATTAGTAATGCAAGCAATAGAAACAGCATCTTAACATTTTGAACAGCGTGCTATCACGATAAGGTAACAGAGCAACCGAATCAAAATCTAAAGAAACACAAGTAAGAAACTTAAAGAATCAGACGGTGGAAATAAAACAAGTTGCGGTGTGGAAAACTGTCTAATGTCTGCACAACTATCAATTGGCCACTGAAACACTCAAAGTGATCATGCAAGTTACAGCTGCATGTTCTCAGAAACATCTGGTGCACTTGAACTACATGATAATGCAAGATTCTAAAGGAGCACATAATGAGAGAGAGCTCGCTGCAAACGAAGTATTAGGAATGCAAGCAATGGAAACATCATCTTAACCCTTCGAACAATGTGCTTAGAATAACAAACTAACTGAATCCAAATCTAATGAAACATAAAGTAAGAAACTTTAATAATCAGACGGTGTTAACACTGAAGGGGATCATGTAAGTTGCAGCTGTATATTCTCAAAGTATAAACATGAATCAAGCAATTACCCTAAACATCTGCAACTTAAAGCACTTAACCTTAAAACCTTTTTCAATTCCTCTATGAAACAGAAACGAGTTAAAGCATTTTACCCTAAACATCTTAAGCAACTCGAGAATCCCCAAAACGATGTCGTTCACATAGCAAAACCCAGAGGCTTCACTCTTCTTCGCATGGTGAAGCCCACCGCCCCAATTAATCGCAATATCCGCATCCTGCCGGTTCAACTTAACCGCAGCGCCAATCGAACCTCCGGCGGAAGCGCGGCAGAAGTCGAAAAGCCCGTCGAAGACGGGACAATCCTCGCCGACGTTGAATCGCCTCAGGTTCCGCGCGGCGGAGTGATCGCCCATGGACTCCGGCGAGACGGAGCGGAGGAAATCGACGTAGTCCGGGGAATGGACTCCAACCGCAACTGCAGTCTGCAACAAGTCAACAGAAAAAAAACTTTCAAGAACAATATGTTTACCAACAAGTATAGAAGTGAAAGAGAGATGAAAAGACCTCATAACACCAGCAACGGGCAACATTTCGTATAGTATACCCTCCACCACCCAAGACCATGAGAGGAACGTTGAAAGATCTCAAGAACCGGAGGCAATCAGCATGACCCTTGACTGATAAGTTAAAGCAACCCAAACGATCACCGCTTAACGAGTCAGCCCCGCACTGAAGAACGACTGCCTCTGGCTGATACACATCCATAACCTTCTGGATAAGAGGTCTAAACATGCTGCGGAAACTCTCATCGTCCATACCATCGTTTAATGGAACATTTAGAGCGTAGTATTTCCCTTTCTCAGCGCCAATGTCTCTGATGTGACCAGTTCCTGGGAAAAAGTCTCCGAACTTGTGAAAAGAAACTGTCATAACTCTGTCGGTGGTGTAAAACGCTTCTTCTACTCCATCTCCATGGTGCACATCGATATCAACGTAGAGAACTCGCTGCAAACAAAAATATGATGAAAGCATATTAGTAATGCAAGCAATAGAAACAGCATCTTAACATTTTGAACAGCGTGCTATCACGATAAGGTAACAGAGCAACCGAATCAAAATCTAAAGAAACACAAGTAAGAAACTTAAAGAATCAGACGGTGGAAATAAAACAAGTTGCGGTGTGGAAAACTGTCTAATGTCTGCACAACTATCAATTGGCCACTGAAACACTCAAAGTGATCATGCAAGTTACAGCTGCATGTTCTCAGAAACATCTGGTGCACTTGAACTACATGATAATGCAAGATTCTAAAGGAGCACATAATGAGAGAGAGCTCGCTGCAAACGAAGTATTAGGAATGCAAGCAATGGAAACATCATCTTAACCCTTCGAACAATGTGCTTAGAATAACAAACTAACTGAATCCAAATCTAATGAAACATAAAGTAAGAAACTTTAATAATCAGACGGTGTTAACACTGAAGGGGATCATGTAAGTTGCAGCTGTATATTCTCAAAGTATAAACATGAATCAAGCAATTACCCTAAACATCTGCAACTTAAAGCACTTAACCTTAAAACCTTTTTCAATTCCTCTATGAAACAGAAACGAGTTAAAGCATTTTACCCTAAACATCTTAAGCAACTCGAGAATCCCCAAAACGATGTCGTTCACATAGCAAAACCCAGAGGCTTCACTCTTCTTCGCATGGTGAAGCCCACCGCCCCAATTAATCGCAATATCCGCATCCTGCCGGTTCAACTTAACCGCAGCGCCAATCGAACCTCCGGCGGAAGCGCGGCAGAAGTCGAAAAGCCCGTCGAAGACGGGACAATCCTCGCCGACGTTGAATCGCCTCAGGTTCCGCGCGGCGGAGTGATCGCCCATGGACTCCGGCGAGACGGAGCGGAGGAAATCGACGTAGTCCGGGGAATGGAACTGGCCGATGTCGGAGGCGTCGGCGAGGTTAGGGCGGCTGATCTCGAGGCGACGGTGGAGGTTGTAGTGTACGATGAGGCTGTGAGCCATACGGATCCGGTGAGGCTTCATCGGGTGTCCTTGGCCGTAGTAGTAGTCGCCGATCGTCGGCTCGTAGAAGTAGCTGACTCGACGCTTGCGTCCGTCGGGACCTGACGGCAATGATACGCCGCTCTCGTCTGTCTCCAT
CDS Sequence
- >Bra035858
ATGGAGACAGACGAGAGCGGCGTATCATTGCCGTCAGGTCCCGACGGACGCAAGCGTCGAGTCAGCTACTTCTACGAGCCGACGATCGGCGACTACTACTACGGCCAAGGACACCCGATGAAGCCTCACCGGATCCGTATGGCTCACAGCCTCATCGTACACTACAACCTCCACCGTCGCCTCGAGATCAGCCGCCCTAACCTCGCCGACGCCTCCGACATCGGCCAGTTCCATTCCCCGGACTACGTCGATTTCCTCCGCTCCGTCTCGCCGGAGTCCATGGGCGATCACTCCGCCGCGCGGAACCTGAGGCGATTCAACGTCGGCGAGGATTGTCCCGTCTTCGACGGGCTTTTCGACTTCTGCCGCGCTTCCGCCGGAGGTTCGATTGGCGCTGCGGTTAAGTTGAACCGGCAGGATGCGGATATTGCGATTAATTGGGGCGGTGGGCTTCACCATGCGAAGAAGAGTGAAGCCTCTGGGTTTTGCTATGTGAACGACATCGTTTTGGGGATTCTCGAGTTGCTTAAGATGTTTAGGCGAGTTCTCTACGTTGATATCGATGTGCACCATGGAGATGGAGTAGAAGAAGCGTTTTACACCACCGACAGAGTTATGACAGTTTCTTTTCACAAGTTCGGAGACTTTTTCCCAGGAACTGGTCACATCAGAGACATTGGCGCTGAGAAAGGGAAATACTACGCTCTAAATGTTCCATTAAACGATGGTATGGACGATGAGAGTTTCCGCAGCATGTTTAGACCTCTTATCCAGAAGGTTATGGATGTGTATCAGCCAGAGGCAGTCGTTCTTCAGTGCGGGGCTGACTCGTTAAGCGGTGATCGTTTGGGTTGCTTTAACTTATCAGTCAAGGGTCATGCTGATTGCCTCCGGTTCTTGAGATCTTTCAACGTTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATACGAAATGTTGCCCGTTGCTGGTGTTATGAGACTGCAGTTGCGGTTGGAGTAGAGCCGGACAATAAGCTCCCGTACAATGAGTACTTTGAGTATTTCGGTCCAGACTATACGCTTCACGTCGATCCAGGCCCAATGGAGAATTTGAACACACCAAAAGATATGGAGAAGATAAGGAACACATTGCTAGAGCAACTTTCGGGACTAATACACGCACCTAGCGTGCAGTTTCAGCACACACCTCCAGTGAATAGAGTTTTGGATGAGCCGGAAGAAGACTTGGAGGAAAGACCAAAGCCTCGGATTTGGAGTGGAACTGCGAATTATGAATCAGACAGTGACGATGATGAGAAATCACCACCCCTTGTTGGTTACTCGGGTATTAATGACCCACCTATGGACAGGGACTCTACTGGTGAAGATGATATGGAAGATGAGCCTGAAGTGAATCCACCATCCTCTTAA
Protein Sequence
- >Bra035858
METDESGVSLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIVHYNLHRRLEISRPNLADASDIGQFHSPDYVDFLRSVSPESMGDHSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGAEKGKYYALNVPLNDGMDDESFRSMFRPLIQKVMDVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHVDPGPMENLNTPKDMEKIRNTLLEQLSGLIHAPSVQFQHTPPVNRVLDEPEEDLEERPKPRIWSGTANYESDSDDDEKSPPLVGYSGINDPPMDRDSTGEDDMEDEPEVNPPSS