Information report for Bra023473
Gene Details
Functional Annotation
- Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
Homologous
- Brassica napus: BnaA02G0054000ZS, BnaC02G0062900ZS
- Brassica oleracea: Bo2g011990
- Citrullus lanatus: Cla97C10G196710
- Cucumis melo: MELO3C009987
- Cucumis sativus: CsGy3G037710
- Glycine max: Glyma.19G063300
- Gossypium hirsutum: Gohir.D10G086800, Gohir.A10G102600
- Juglans regia: Jr01_04920
- Manihot esculenta: MANES_17G112900
- Medicago truncatula: Medtr6g007797
- Populus trichocarpa: POPTR_017G071900v3
- Rosa chinensis: RchiOBHm_Chr2g0172941
- Vitis vinifera: VIT_14s0066g00720
Gene Resources
- Pfam: PF00400
- UniProt: A0A816WM05
- RefSeq: XP_013662395.1 , XP_013726113.1
- EMBL: HG994356
- AlphaFoldDB: A0A816WM05
- KEGG: bna:106429889
- OMA: HNEGYIR
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR037867
- PANTHER: PTHR19861 , PTHR19861:SF9
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A816WM05
- SMR: A0A816WM05
Sequences
gDNA Sequence
- >Bra023473
CACTGAGGACGTTGTTGGTCGGCAGAAGGATCAGCGGGGGCTGGTGCCTCGCCGTCGTTGGGGATCCAGAAAGTGAGAACCGTAGAGGCAGCAACGAACATTGCTCTACGCGGTGCCCATTTCAGACACGACGCTACTCCTATGTTGTTCTCCCACCTCGCCACCTGCTTTTTTAGACTTTGTTTAGATACTGTGACAAGGATAATGGCAAAAAGGAATACAGTAGCTACAACTTTCTGAATCATTCATCTTCTTTTAAGTGAACCAGTGTCCATAACTGGTGTATGTACAATATCAATGGTGTTTGACTGTTCCGTATTTACCTCAGATGGGTTCTCGATGTTCCACGCATGTAAGGTTCCATCTCCTGAACCTGTATCCACATACAAATAACACTAACTGTGAGTCATGATAAAGATAAATCTAGCATTATCTGGACAAGTGCATGACCATATTACCTGACAGAACATACTTGCCATCTGGCGTGAAGGTGGCTTCTAGGGATGTACCCTGTGAAGGCTCCAAACTAAAACCACATTTCTGCAAAGCAAACAAAAATGAACATAATGTTCTGTCTTCTTCAAATGAAAGATAAAAAATGTAGTTACCTTCTCTCCATGATATGCGTCAAGAACGTAGATATTGTTATTTGTGGTAGTAAGAAGCATAGATTTTCCATCGTTGCTGAATTTAATATCGTTAACCTCAGCAGTATCACCACCCACCAGAAATGTGTCAAAGGGACCCTACAGAAGAGATCAACTGGGTTTAGTTAGAACTACAAGAGAATTCGTTTGCAAGGTTGTGTGAATCATAGCAAGTAGCTAACCTTGTCATAACATCTGGAATCAAATAACTTAACAGCACCTCCTTCCATTGCAATTGCAAACACCAGGCCTTGTTGGTCGTAAGCTACCGCAGGTCTCCCACGTAGGTGTAGAATTCCCTGTAGACTAAAAGGGTAAGCACAAATCATGAAACTATATGCATTACAAGAGAGGCTGTTAACTAGGGAAGAGAGCCTAAATCTAGATTCTAAAATGTTACATGGTTGCAGCATCTTCATCAAGTCAATTAACAACAAGAAAGAGCACTTTCTTGACTAAATCTCTAGCATAATCATATGAAATTCTCAGGGACTTTGTGAAAGTGGAAACAAACCTGGCAGGCATTAACACGAAGATCCCAGAGTCTGACACTTCTGTCTAAAGAACCAGACATGAAGCTATCATTAATAGGCGACATACAAAGCGAAACAACCCTAAAAACAGAACAACATTTTTTCATCAATGTACATAATAATACTAGTGCATAAGCATATATCACCAATAAATTCAATCTCAGAGGTTATTAAAAGACCTGTCTTTGTGGCCTTTAAAGTAGCGAAGGATCCGATTATCATACATTGAGAGATATCTCAGAGATTCTGGTACATGAAAAAAAACTAAATGTGTTAACACCATTACTGAATAAACCAATCTCAAGCTAAGGTAAGTGAGAAGGAGGAGTCATCATTACCTCCAGTGGACTCAAGATTGTATAGAGAAGAGCAAATAAGAGAGCTGGGATGATGTGTAAAGCATACACGATCAGTCCCATGTTTCTTATGATATGTTACCTTCACCTGTCTACGCTTCAACAAAAAAAAAATGGATACAAAAAATAAATTAATCTATTTATCCCAAAATATTATTCTCAATTCCCTAAGGCAATTAGATTCCTCTCTCGCTAGAACACTATGAGCTAAGGAGAGAAACTGACTTAGCGTTGGCGATATCGAAGAGACGAAGCGAATCGTCCTCGCTCGACGTCACCAGCAGATCATCAGTCCTGTGGAACCCCACCGAACGTATCTTCCCTCCCTGCAAATCCAACGATGAGATCAATTGGATTTTGGCAAAAGTTAATCGGAGATCATAGGAGAAGAGAAAAGTAATTGCGTACGAAGTCGGAGAAGACTGCTCCGATGGCCATGCTGCGTACAAGTCCGTCGTCTAGCTCCGTCAACGACAT
CDS Sequence
- >Bra023473
ATGTCGTTGACGGAGCTAGACGACGGACTTGTACGCAGCATGGCCATCGGAGCAGTCTTCTCCGACTTCGGAGGGAAGATACGTTCGGTGGGGTTCCACAGGACTGATGATCTGCTGGTGACGTCGAGCGAGGACGATTCGCTTCGTCTCTTCGATATCGCCAACGCTAAACAGGTGAAGGTAACATATCATAAGAAACATGGGACTGATCGTGTATGCTTTACACATCATCCCAGCTCTCTTATTTGCTCTTCTCTATACAATCTTGAGTCCACTGGAGAATCTCTGAGATATCTCTCAATGTATGATAATCGGATCCTTCGCTACTTTAAAGGCCACAAAGACAGGGTTGTTTCGCTTTGTATGTCGCCTATTAATGATAGCTTCATGTCTGGTTCTTTAGACAGAAGTGTCAGACTCTGGGATCTTCGTGTTAATGCCTGCCAGGGAATTCTACACCTACGTGGGAGACCTGCGGTAGCTTACGACCAACAAGGCCTGGTGTTTGCAATTGCAATGGAAGGAGGTGCTGTTAAGTTATTTGATTCCAGATGTTATGACAAGGGTCCCTTTGACACATTTCTGGTGGGTGGTGATACTGCTGAGGTTAACGATATTAAATTCAGCAACGATGGAAAATCTATGCTTCTTACTACCACAAATAACAATATCTACGTTCTTGACGCATATCATGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACATCCCTAGAAGCCACCTTCACGCCAGATGGCAAGTATGTTCTGTCAGGTTCAGGAGATGGAACCTTACATGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGCGTCGTGTCTGAAATGGGCACCGCGTAGAGCAATGTTCGTTGCTGCCTCTACGGTTCTCACTTTCTGGATCCCCAACGACGGCGAGGCACCAGCCCCCGCTGATCCTTCTGCCGACCAACAACGTCCTCAGTGA
Protein Sequence
- >Bra023473
MSLTELDDGLVRSMAIGAVFSDFGGKIRSVGFHRTDDLLVTSSEDDSLRLFDIANAKQVKVTYHKKHGTDRVCFTHHPSSLICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSLEPSQGTSLEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVASCLKWAPRRAMFVAASTVLTFWIPNDGEAPAPADPSADQQRPQ