Information report for Bo4g192880
Gene Details
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Functional Annotation
- Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Homologous
- Brassica napus: GSBRNA2T00084756001, BnaC04G0590800ZS, GSBRNA2T00140275001, GSBRNA2T00044478001, GSBRNA2T00045066001, BnaA04G0273100ZS, Bnascaffold0026G0060200ZS, GSBRNA2T00139104001, GSBRNA2T00075487001, BnaC03G0245900ZS
- Brassica rapa: XP_009142152.1, Bra037742, XP_009142153.1, XP_009133563.1, XP_009133562.1, Bra000283
- Raphanus raphanistrum: RrC2388_p6
Gene Resources
- Pfam: PF00010
- UniProt: A0A0D3C5X4
- RefSeq: XP_013632091.1
- AlphaFoldDB: A0A0D3C5X4
- KEGG: boe:106337536
- OMA: RSHTFLE
- InterPro: IPR011598 , IPR036638 , IPR044273 , IPR047265
- PANTHER: PTHR46807 , PTHR46807:SF7
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A0D3C5X4
- SMR: A0A0D3C5X4
- CDD: cd11445
- eggNOG: ENOG502QTIX
- STRING: 109376.A0A0D3C5X4
- HOGENOM: CLU_030314_1_1_1
Sequences
gDNA Sequence
- >Bo4g192880
TGGAACATCAAGGTTGGAATTTTGAGGAGAATTGCAACTTATCCAACAATAGGAGATCATCTTTAAGGTATATTATGTTTAATCTAACTATTCATTTAGCGTTTAAAAAAAAAAATCTATATAATAGTATCTGAGTGTACATATTTGTAGGCCACAGGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCACACCTTTCTTGAGGATCAAGAAACCGTCTCTTGGTTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCTCAGAGATGGTTAAGCACGAGGCCGGTCCTGACCCTCCTGATCAGGCCATGCCTCCTCCTATGTTTAGGTTAACGGATTCATCATCAAGTGTCAAGGAACTAGGAAAGGAACAATACTCGGTTGTGACCGTTGGACCGAGCCATTGCGGAAGCAGCCAATCTCATAACAATCTTGATGTCTCAGTGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGTGTGCAAAGCATTACAACAGACCGTAAGAGAAAACATATAGTGGACACTGATGAATATGCATCTCAACCAGATGTATGTTTTATTTTTTAGCTCATGATATTAAGTTCTTGAAACGTGTTTTCGTACATTGCTCATATTTCTTGAAACTTTTTACAGGTAATAGGTAACAAAACGAACCAACGACCAGGATCAACGGGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGGTACTTCATCGGTTCGTCTAAATATAATTATTTTGTCAAACAAAAGTCTATATATAATTATGTATGATATATAGTAATTAATGTTAGTAGATTGTGTATTCGGACAAAGATAAGAGATATAAACTGTTTTGTGTTAATTAAAATAGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGACTTTGCAAGAACTAATACCTCACTGCACTAAAGTAAGTTACAAACTAGAAAATGATTCGGAGATTGATTGATTAAATTGAAAAACTTGTTATTAATTGGATTTGTTTTTTTTTTTTGGCAGACTGATAAATTATCAATATTGGACGAAACCATAGATTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGCTGCTGCTGCGACAGCTCCGATGATGCTCCCTGGCGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGTTGCCTCGATTTCCGGTTATGAACAATCCCGGTATAGTTTGTCAAAATCCGATACAAAACCAAGTTTTCTCCAATTGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCCGCGCCTCAGGTAAGGCTCATACGACGTAGACTATTTACTTGAGTGTTATTTGAGCATCAACGACGTCGTCTACTTTAGTGCTAAACGACTTATGATGATTTGACACGTTGTGGTTTGATATTATACGCAGCCGGTGGAGATGCTAAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGGCGAAGACCACCGACGGTTCTCGTTAG
CDS Sequence
- >Bo4g192880
ATGGAACATCAAGGTTGGAATTTTGAGGAGAATTGCAACTTATCCAACAATAGGAGATCATCTTTAAGGCCACAGGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCACACCTTTCTTGAGGATCAAGAAACCGTCTCTTGGTTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCTCAGAGATGGTTAAGCACGAGGCCGGTCCTGACCCTCCTGATCAGGCCATGCCTCCTCCTATGTTTAGGTTAACGGATTCATCATCAAGTGTCAAGGAACTAGGAAAGGAACAATACTCGGTTGTGACCGTTGGACCGAGCCATTGCGGAAGCAGCCAATCTCATAACAATCTTGATGTCTCAGTGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGTGTGCAAAGCATTACAACAGACCGTAAGAGAAAACATATAGTGGACACTGATGAATATGCATCTCAACCAGATGTAATAGGTAACAAAACGAACCAACGACCAGGATCAACGGGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGACTTTGCAAGAACTAATACCTCACTGCACTAAAACTGATAAATTATCAATATTGGACGAAACCATAGATTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGCTGCTGCTGCGACAGCTCCGATGATGCTCCCTGGCGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGTTGCCTCGATTTCCGGTTATGAACAATCCCGGTATAGTTTGTCAAAATCCGATACAAAACCAAGTTTTCTCCAATTGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCCGCGCCTCAGCCGGTGGAGATGCTAAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGGCGAAGACCACCGACGGTTCTCGTTAG
Protein Sequence
- >Bo4g192880
MEHQGWNFEENCNLSNNRRSSLRPQDELVELLWRDGQVVLQSQTNREQTQAQTVKHDHHQETLRSHTFLEDQETVSWLQYPPYEDQFITDGFSSHFFSTGNPLERPASEMVKHEAGPDPPDQAMPPPMFRLTDSSSSVKELGKEQYSVVTVGPSHCGSSQSHNNLDVSVRHDRSKTVNERLYHNAGSSSGGSSGCSFGKNIKEMAGVQSITTDRKRKHIVDTDEYASQPDVIGNKTNQRPGSTGRSRAAEVHNLSERRRRDRINERMKTLQELIPHCTKTDKLSILDETIDYMKSLKLQLQVMWMGNGMAAAATAPMMLPGVQPQPFIRQMQSPVQLPRFPVMNNPGIVCQNPIQNQVFSNWFDRYIGVFPQMQAAPQPVEMLRFGSQAGQQSQQPSAPAKTTDGSR