Information report for Bo2g011990
Gene Details
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Functional Annotation
- Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
Homologous
- Brassica napus: BnaA02G0054000ZS, BnaC02G0062900ZS
- Brassica rapa: Bra023473
- Citrullus lanatus: Cla97C10G196710
- Cucumis melo: MELO3C009987
- Cucumis sativus: CsGy3G037710
- Glycine max: Glyma.19G063300
- Gossypium hirsutum: Gohir.A10G102600, Gohir.D10G086800
- Juglans regia: Jr01_04920
- Manihot esculenta: MANES_17G112900
- Medicago truncatula: Medtr6g007797
- Populus trichocarpa: POPTR_017G071900v3
- Rosa chinensis: RchiOBHm_Chr2g0172941
- Vitis vinifera: VIT_14s0066g00720
Gene Resources
- Pfam: PF00400
- UniProt: A0A3P6DAB1
- EMBL: LR031874
- AlphaFoldDB: A0A3P6DAB1
- OMA: HNEGYIR
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR037867
- PANTHER: PTHR19861 , PTHR19861:SF9
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
Sequences
gDNA Sequence
- >Bo2g011990
CACTGAGGAGGTTGTTGGTCGGCAGAATGATCGGCGGGGGCTGGTGCCTCGCCGTCGTTGGGGATCCAGAAAGTGAGAACCGTAGAGGCAGCAACGAACATTGCTCTACGCGGTGCCCATTTCAGACACGACACTACTCCTATGTTGTTCTCCCACCTCGCCACCTGCTTTTTTAGACTAAGTTTAGATACTGTGACAAGGATAATGGCAAAAAGGAATACAATAGCTACAACTTTCTGAATCATTCATCTTCTTTTAAGTGAACCAGTGTCCATAACTGGTGTATGTACAATATTAATGGTGTTTTGACTGTTCCGTATTTACCTCAGATGGGTTCTCGATGTTCCACGCATGTAAGGTTCCATCTCCTGAACCTGTATCCACACAAAAATAACACTAACTGTGAGTCACGATAAAGATAATCTAGCATTATCTGGACAAGTGTATGACCATATTACCTGACAAAACATACTTGCCATCTGGTGTGAAGGTGGCTTCTAGGGATGTACCCTGTGAAGGCTCCAAACTAAAACCACATTTCTACAAAACAAAAAAAAAATGACATAATGTTCTGTCTTCTTCAAATGAAAGATACAAAATGTAGTTACCTTCTCTCCATGATATGCGTCAAGAACGTAGATATTGTTATTTGTGGTAGTGAGAAGCATTGATTTTCCATCGTTGCTGAATTTAATATCGTTAACCTCAGCAGTATCACCACCCACCAGAAATGTATCAAAGGGACCCTACAGAAGAGATCAACTGGGCTTAGTTAGAACTACAAGAGAATTCGTTTGCAAGGCTGTGTGAATCATAGCAAGTAGCTAACCTTGTCATAACATCTGGAATCAAATAACTTAACAGCACCTCCTTCCATTGCAATTGCAAACACCAGGCCTTGTTGGTCATAAGCTACAGCAGGTCTCCCACGTAGGTGTAGAATTCCCTATAGAGTAAAAGGGTAAGCATAAATCATGAAACTATATGCATTCACAGAGAGGCTATATGAAAATGGTTCCAGCAATTTATCAAGTTAAATTAACAAAAAGAAAGAGCCATTTCCCGGTTGAAATTCTAACACATTCAGACTTGTTCCATAGTGGAAATTCTCAGGGACTTTGTGAAAGTGGAAACAAACCTGGCAGGCATTAACACGAAGATCCCAGAGTCTGACACTTCTGTCTAAAGAACCAGACATGAAGCTATCATTAATAGGCGACATACAAAGCGAAACAACCCTGAAAGCAGAAGAACATTTTTCCATCAATGTACATAATAATACTAGTGCATAAGCATAACACCAATATATCCAATCTCAGAGGTTATAAAAGACCTGTCTTTGTGGCCTTTAAAGTAGCGAAGGATCCGGTTATCATACATTGAGAGATATCTCAGAGATTCTGGTACATGAAAAAAACATATCCAACTAAATGTGTTAACACCAATCTCAAGCAAGGTAAGTGAGAAGGACGAGTCATCATTACCTCCAGTGGACTCAAGATTGTAAAGAGAAGAGCAAATAAAAGAGCTGGGATGATGTGTAAAGCATACACGATCAGTCCCATGTTTCTTGTGATATGTAACCTTCACCTGTCTACGCTTCAACCAAAAAAAATGGATAATTAAATTTAAAAAAAAAAAACTAAAACCTTAATTAATCTATTTATCCCAAAATATTCTTCTCAATTCCCTAAGGCAATTAGATTCTCTAGCTAAGGAGAGAAACTGACTTAGCGTTGGCGATATCGAAGAGACGAAGCGAATCGTCCTCGCTCGACGTCACCAATAGATCATCAGTCCTATGGAACCCCACCGAACGTATCTTCCCTCCCTGCAAATTCAACGATGAGATCAAATCTCGAGAATTGGATTTTTGGCAAAGTTAATCGAGAAAAGTAGTTGCGTACGAAGTCGGAGAAGACTGCTCCGATGGCCATACTGCGTACCAGTCCGTCGTCTAGCTCCGTCAACGACAT
CDS Sequence
- >Bo2g011990
ATGTCGTTGACGGAGCTAGACGACGGACTGGTACGCAGTATGGCCATCGGAGCAGTCTTCTCCGACTTCGGAGGGAAGATACGTTCGGTGGGGTTCCATAGGACTGATGATCTATTGGTGACGTCGAGCGAGGACGATTCGCTTCGTCTCTTCGATATCGCCAACGCTAAACAGGTGAAGGTTACATATCACAAGAAACATGGGACTGATCGTGTATGCTTTACACATCATCCCAGCTCTTTTATTTGCTCTTCTCTTTACAATCTTGAGTCCACTGGAGAATCTCTGAGATATCTCTCAATGTATGATAACCGGATCCTTCGCTACTTTAAAGGCCACAAAGACAGGGTTGTTTCGCTTTGTATGTCGCCTATTAATGATAGCTTCATGTCTGGTTCTTTAGACAGAAGTGTCAGACTCTGGGATCTTCGTGTTAATGCCTGCCAGGGAATTCTACACCTACGTGGGAGACCTGCTGTAGCTTATGACCAACAAGGCCTGGTGTTTGCAATTGCAATGGAAGGAGGTGCTGTTAAGTTATTTGATTCCAGATGTTATGACAAGGGTCCCTTTGATACATTTCTGGTGGGTGGTGATACTGCTGAGGTTAACGATATTAAATTCAGCAACGATGGAAAATCAATGCTTCTCACTACCACAAATAACAATATCTACGTTCTTGACGCATATCATGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACATCCCTAGAAGCCACCTTCACACCAGATGGCAAGTATGTTTTGTCAGGTTCAGGAGATGGAACCTTACATGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGTGTCGTGTCTGAAATGGGCACCGCGTAGAGCAATGTTCGTTGCTGCCTCTACGGTTCTCACTTTCTGGATCCCCAACGACGGCGAGGCACCAGCCCCCGCCGATCATTCTGCCGACCAACAACCTCCTCAGTGA
Protein Sequence
- >Bo2g011990
MSLTELDDGLVRSMAIGAVFSDFGGKIRSVGFHRTDDLLVTSSEDDSLRLFDIANAKQVKVTYHKKHGTDRVCFTHHPSSFICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSLEPSQGTSLEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGEAPAPADHSADQQPPQ