Information report for TID1;SRS5
Gene Details
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Functional Descriptions
- Our analysis of the TID1-1 mutant revealed that the dynamics of microtubules affects not only anisotropic growth in both dicots and monocots, but also meristematic activity and gross plant morphology.
- Here, we report a dominant mutant, Twisted dwarf 1-1 (TID1-1), showing dwarfism and twisted growth in rice.
- TID1-1 exhibit right helical growth of the leaves and stem and shortening of the roots.
- These data indicate that SRS5 independently regulates cell elongation of the brassinosteroid signal transduction pathway.
- In this study, we report a novel semi-dominant mutant Small and round seed 5 (SRS5) that encodes alpha-tubulin protein.
- Seeds of the double mutant of SRS5 and d61-2 were smaller than those of SRS5 or d61-2.
- Lemma cell length was reduced in SRS5 compared with that of the wild-type.
- Cells in the leaves of TID1-1 are often ill-shapen, possibly owing to irregular cell division.
- In this study, we showed that overexpression of SRS5 can promote grain length and demonstrated that the overexpression of SRS5 in BR-related mutants rescued the shortened grain length, which is an unfavorable phenotype in the yield potential of BR-related mutants, while preserving the useful semi-dwarf and erect leaf phenotypes.
- Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).
- Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2.
- Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice ( Oryza sativa L.).
- Previously, we cloned SMALL AND ROUND SEED 5 (SRS5) gene (encoding alpha-tubulin) from a small and round seed mutant and revealed that this gene regulates grain length independently of the brassinosteroid (BR) signaling pathway, although BR-related mutants set small grain.
- Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice.
Functional Keywords
- meristem , growth , root , brassinosteroid , stem , seed , lemma , cell-elongation , dwarf , cell-division , leaf , grain , grain-length , yield , grain-size , erect , herbicide-resistance
Literature and News
- Small and round seed 5 gene encodes alpha-tubulin regulating seed cell elongation in rice . DOI: 10.1186/1939-8433-5-4 ; PMID: 24764504
- A dominant mutation of TWISTED DWARF 1 encoding an alpha-tubulin protein causes severe dwarfism and right helical growth in rice . DOI: 10.1266/ggs.84.209 ; PMID: 19745569
- Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.) . DOI: 10.1270/jsbbs.16198 ; PMID: 29085249
- Developing a novel artificial rice germplasm for dinitroaniline herbicide resistance by base editing of OsTubA2 . DOI: 10.1111/pbi.13430 ; PMID: 32535959
Gene Resources
- UniProt: Q0ITK1
- EMBL: AB512760, AK102560, DP000010
- AlphaFoldDB: Q0ITK1
- EnsemblPlants: Os11t0247300-01
- Gramene: Os11t0247300-01
- Orthologous matrix: RRVTDNC
- InterPro: IPR000217, IPR002452, IPR003008
- PANTHER: PTHR11588
- SUPFAM: SSF52490, SSF55307
- PROSITE: PS00227
- Gene3D: 1.10.287.600, 3.30.1330.20, 3.40.50.1440
- OrthoDB: Q0ITK1
- SWISS-MODEL: Q0ITK1
- Conserved Domain Database: cd02186
Sequences
cDNA Sequence
- >LOC_Os11g14220.1
GGAGGTGGAAACCCTACCACACCGCAGAGAAAGGCGTCTTCGTACTCGCCTCTCTCCGCGCCCTCCTCCGCCGCCGCTCGCCGCCGTTCGTCTCCGCCGCCACCGCCGCCGCCATGAGGGAGTGCATCTCGATCCACATCGGGCAGGCCGGTATCCAGGTCGGGAACGCGTGCTGGGAGCTCTATTGCCTCGAGCATGGCATCCAGCCTGATGGACAGATGCCCGGTGACAAGACCGTTGGGGGAGGTGATGATGCTTTTAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCATGTCCCCCGTGCTGTCTTCGTCGATCTTGAGCCTACCGTGATTGATGAGGTGAGGACTGGTGACTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCATTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGGAGGAACGGGCTCCGGTCTCGGTTCCCTTCTCCTTGAGCGTCTCTCTGTGGACTATGGCAAGAAGTCCAAGCTCGGGTTCACCGTGTACCCGTCCCCTCAGGTCTCCACCTCTGTGGTTGAGCCATACAACAGTGTCCTCTCCACCCACTCCCTCCTTGAGCACACCGATGTCGCTGTCCTGCTCGACAATGAGGCCATCTATGACATCTGCCGCCGCTCCCTCGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTCATCTCCTCACTGACTGCCTCCCTGAGGTTCGATGGTGCTCTGAATGTGGATGTCAACGAGTTCCAAACCAACCTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTACGCCCCGGTGATCTCGGCCGAGAAGGCCTACCACGAGCAGCTCTCCGTGGCGGAGATCACCAACAGCGCCTTCGAGCCGTCCTCCATGATGGCCAAGTGCGACCCGCGCCACGGCAAGTACATGGCGTGCTGCCTGATGTACCGCGGCGACGTGGTCCCCAAGGACGTGAACGCCGCGGTGGCCACCATCAAGACGAAGCGCACCATCCAGTTCGTGGACTGGTGCCCCACGGGGTTCAAGTGCGGCATCAACTACCAGCCGCCCAGCGTCGTCCCGGGGGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGATCTCCAACTCCACCAGCGTCGTCGAGGTGTTCTCCCGCATCGACATCAAGTTCGACCTCATGTACTCCAAGCGCGCCTTCGTCCACTGGTACGTCGGCGAGGGCATGGAGGAGGGGGAGTTCTCCGAGGCCCGCGAGGACCTCGCCGCGCTGGAGAAGGACTACGAGGAGGTCGGCTCCGAGTTCGACGATGGTGACGAGGGTGATGAGGGTGACGAGTACTAGAGAGGTTCAGGGTTCTTGCCTGGTGCCTTGGCAATGCTTGATTACTGCTGCTATCCTATGATCTGTCCGTGTGGGCTTCTATCTATCAGTTTGTGTGTCTGGTTTTGAAAAACATTTGCTTTTCGATTATGCAGGGTTTGCTTGTAGCTTTCGCTGCTGTGACCTGTGTTGTTTATGTGAACCTTCTTTGTGGCATCTTTAATATCCAAGTTCGTGGTTTGTCGTAAAACGAAGCCTCTACTTCGTAAAGTTGTGTCTATAGCATTGAAATCGTTTTTTTGCTCGAGAATAATTGTGACCTTTAGTTGGCGTGAAACTAGTTTTGG
CDS Sequence
- >LOC_Os11g14220.1
ATGAGGGAGTGCATCTCGATCCACATCGGGCAGGCCGGTATCCAGGTCGGGAACGCGTGCTGGGAGCTCTATTGCCTCGAGCATGGCATCCAGCCTGATGGACAGATGCCCGGTGACAAGACCGTTGGGGGAGGTGATGATGCTTTTAACACCTTCTTCAGTGAGACTGGTGCTGGGAAGCATGTCCCCCGTGCTGTCTTCGTCGATCTTGAGCCTACCGTGATTGATGAGGTGAGGACTGGTGACTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCATTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGGAGGAACGGGCTCCGGTCTCGGTTCCCTTCTCCTTGAGCGTCTCTCTGTGGACTATGGCAAGAAGTCCAAGCTCGGGTTCACCGTGTACCCGTCCCCTCAGGTCTCCACCTCTGTGGTTGAGCCATACAACAGTGTCCTCTCCACCCACTCCCTCCTTGAGCACACCGATGTCGCTGTCCTGCTCGACAATGAGGCCATCTATGACATCTGCCGCCGCTCCCTCGACATTGAGCGCCCAACCTACACCAACCTCAACAGGCTTGTGTCCCAGGTCATCTCCTCACTGACTGCCTCCCTGAGGTTCGATGGTGCTCTGAATGTGGATGTCAACGAGTTCCAAACCAACCTGGTGCCCTACCCGAGGATCCACTTCATGCTTTCCTCCTACGCCCCGGTGATCTCGGCCGAGAAGGCCTACCACGAGCAGCTCTCCGTGGCGGAGATCACCAACAGCGCCTTCGAGCCGTCCTCCATGATGGCCAAGTGCGACCCGCGCCACGGCAAGTACATGGCGTGCTGCCTGATGTACCGCGGCGACGTGGTCCCCAAGGACGTGAACGCCGCGGTGGCCACCATCAAGACGAAGCGCACCATCCAGTTCGTGGACTGGTGCCCCACGGGGTTCAAGTGCGGCATCAACTACCAGCCGCCCAGCGTCGTCCCGGGGGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGATCTCCAACTCCACCAGCGTCGTCGAGGTGTTCTCCCGCATCGACATCAAGTTCGACCTCATGTACTCCAAGCGCGCCTTCGTCCACTGGTACGTCGGCGAGGGCATGGAGGAGGGGGAGTTCTCCGAGGCCCGCGAGGACCTCGCCGCGCTGGAGAAGGACTACGAGGAGGTCGGCTCCGAGTTCGACGATGGTGACGAGGGTGATGAGGGTGACGAGTACTAG
Protein Sequence
- >LOC_Os11g14220.1
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSEFDDGDEGDEGDEY*