Information report for OsCYP-25;CYP19-3
Gene Details
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Functional Descriptions
- Here, we report on the identification of a new cyclophilin gene OsCYP-25 (LOC_Os09 g39780) from rice which found to be upregulated in response to various abiotic stresses viz.
- These findings suggest that OsCYP-25 might perform an important function in mediating wide range of cellular response under multiple abiotic stresses.
- Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.
- The in silico analysis showed that OsCYP-25 interacts with different proteins involved in cell growth, differentiation, ribosome biogenesis, RNA metabolism, RNA editing, gene expression, signal transduction or stress response.
Functional Keywords
Literature and News
- Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress . DOI: 10.1186/1471-2229-10-253 ; PMID: 21087465
- Cyclophilins are encoded by a small gene family in rice . DOI: 10.1007/BF00028878 ; PMID: 8075400
- Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses . DOI: 10.4161/cib.25260 ; PMID: 24265852
Gene Resources
- UniProt: Q651B0
- EMBL: AK103109, AP014965
- AlphaFoldDB: Q651B0
- EnsemblPlants: Os09t0571400-01
- Gramene: Os09t0571400-01
- KEGG: osa:4347920
- Orthologous matrix: FKSIVPR
- InterPro: IPR002130, IPR020892, IPR024936
- PANTHER: PTHR11071, PTHR11071:SF561
- SUPFAM: SSF50891
- PROSITE: PS00170, PS50072
- Gene3D: 2.40.100.10
- OrthoDB: Q651B0
- SWISS-MODEL: Q651B0
- Conserved Domain Database: cd01926
- eggNOG: KOG0865
Sequences
cDNA Sequence
- >LOC_Os09g39780.2
TTCCTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAA - >LOC_Os09g39780.1
TTCCTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAA
CDS Sequence
- >LOC_Os09g39780.2
ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA - >LOC_Os09g39780.1
ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA
Protein Sequence
- >LOC_Os09g39780.2
MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN* - >LOC_Os09g39780.1
MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN*