Gene Details:
- MSU gene ID: LOC_Os09g39780
- RAPdb gene ID: Os09g0571400
- Gene Symbol: OsCYP-25 CYP19-3
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Here, we report on the identification of a new cyclophilin gene OsCYP-25 (LOC_Os09 g39780) from rice which found to be upregulated in response to various abiotic stresses viz.
- These findings suggest that OsCYP-25 might perform an important function in mediating wide range of cellular response under multiple abiotic stresses.
- Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.
- The in silico analysis showed that OsCYP-25 interacts with different proteins involved in cell growth, differentiation, ribosome biogenesis, RNA metabolism, RNA editing, gene expression, signal transduction or stress response.
Function-related keywords:
Literature:
- Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress . DOI: 10.1186/1471-2229-10-253 ; PMID: 21087465
- Cyclophilins are encoded by a small gene family in rice . DOI: 10.1007/BF00028878 ; PMID: 8075400
- Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses . DOI: 10.4161/cib.25260 ; PMID: 24265852
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os09g39780.2
TTCCTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAA - >LOC_Os09g39780.1
TTCCTCCTCATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAA
CDS Sequence
- >LOC_Os09g39780.2
ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA - >LOC_Os09g39780.1
ATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCCTCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGA
Protein Sequence
- >LOC_Os09g39780.2
MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN* - >LOC_Os09g39780.1
MASKNPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRIIPNFMCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAGPNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQLADDHAN*