Information report for AT1G01940
Gene Details
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Functional Descriptions
- PO:0000013 — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009030 — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0005634 — located in — nucleus
- GO:0003755 — enables — peptidyl-prolyl cis-trans isomerase activity
- GO:0034605 — acts upstream of or within — cellular response to heat
- GO:0030623 — enables — U5 snRNA binding
- GO:0000398 — acts upstream of or within — mRNA splicing, via spliceosome
- GO:0005730 — located in — nucleolus
- GO:0005515 — enables — protein binding
- GO:0010494 — located in — cytoplasmic stress granule
- GO:0030620 — enables — U2 snRNA binding
- GO:0006457 — involved in — protein folding
- GO:0071013 — part of — catalytic step 2 spliceosome
Functional Keywords
- cauline leaf , inflorescence meristem , seed , carpel , petal , stem , pollen , plant sperm cell , guard cell
Literature and News
- ADP-ribosylation factor D1 modulates Golgi morphology, cell plate formation, and plant growth in Arabidopsis. DOI: 10.1093/plphys/kiac329 ; PMID: 35876822
- Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. DOI: 10.1111/j.1365-313X.2006.02770.x ; PMID: 16824183
- Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis. DOI: 10.1105/tpc.104.027441 ; PMID: 15749762
- Oviposition by pierid butterflies triggers defense responses in Arabidopsis. DOI: 10.1104/pp.106.090837 ; PMID: 17142483
- Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids. DOI: 10.1104/pp.106.090662 ; PMID: 17189325
- A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies. DOI: 10.1111/j.1365-313X.2006.02972.x ; PMID: 17181774
- Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells. DOI: 10.1104/pp.107.100842 ; PMID: 17496105
Gene Resources
- UniProt: A0A654E794
- EMBL: CACRSJ010000104, CACSHJ010000087
- AlphaFoldDB: A0A654E794
- EnsemblPlants: AT1G01940.1
- Gramene: AT1G01940.1
- KEGG: ath:AT1G01940
- Orthologous matrix: VPFHRVM
- ExpressionAtlas: AT1G01940
- InterPro: IPR002130, IPR020892, IPR024936
- PANTHER: PTHR45625, PTHR45625:SF2
- SUPFAM: SSF50891
- PROSITE: PS00170, PS50072
- Gene3D: 2.40.100.10
- OrthoDB: A0A654E794
- SWISS-MODEL: A0A654E794
- Conserved Domain Database: cd01928
Homologs
- Brassica napus BnaC03G0267200ZS
- Brassica oleracea Bo3g039630
- Oryza sativa OsCYP20-2, OsCYP-25;CYP19-3, OsCYP2;OsCyp2-P, OsCYP19-4, OsCYP21-4
Sequences
cDNA Sequence
- >AT1G01940.1
GATAAACGATTCCGTTTTGTTATTTTCTTAAATGGATCCATAATGTCATTAAAGTGGCCCATATAAGGCCCAATAATACAAGGCGGCGATGCAGAAAGATCTCGAACGAACAAAAGCGCCAAAAGCATCCTAGACGCGACTGAGAAAATAAATATAGAAGAAAGCCTCTCTGCTCGTTTTGCGTTTCCGAGCAACAATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGAAAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAGCACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAGTTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAAGTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGATAGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGTTAAGTCTAATGTGGCAGAACCGAGCCAAGCCAAAAGTGTTGTTCTCTTTATTTGTTTCGATAGAGCTGACATGTACACTCAGAAACTGAACTAAGACCACTGTTTCACCCAATTAAAAAGTTTGTACTGGAGGATTTACCAATTACTGTCTTCAAAGGTGTTTTGTATTATTTAAAGACAAAAATAATTTTTTTTGCCCAA
CDS Sequence
- >AT1G01940.1
ATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACTATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGAAAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAGCACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAGTTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAAGTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGATAGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGTTAA
Protein Sequence
- >AT1G01940.1
MSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPKGTGKGGTSIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG