Gene Details:
- MSU gene ID: LOC_Os05g38120
- RAPdb gene ID: Os05g0455200
- Gene Symbol: SH5 RI
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
- Gene isolation revealed that RI encodes a BELL1-type homeodomain transcRIption factor, similar to Arabidopsis PENNYWISE/ BELLRINGER/REPLUMLESS, and is expressed in the specific regions within the inflorescence and branch meRIstems where their descendant meRIstems would soon initiate.
- In addition, both RI and RIL1 seem to be involved in meRIstem maintenance, because the RI RIl1 double mutant failed to establish or maintain the shoot apical meRIstem duRIng embryogenesis.
- DuRIng early inflorescence development, the timing and arrangement of pRImary branch meRIstem (pBM) initiation was disturbed in both RI and RI RIl1/+ plants.
- Genetic combination of an RI homozygote and a mutant allele of RI-LIKE1 (RIL1) (designated RI RIl1/+ plant), a close paralog of RI, enhanced the RI inflorescence phenotype, including the abnormalities in branch phyllotaxy and rachis internode patterning.
Function-related keywords:
- homeobox-gene , seed-shattering , shattering , abscission-zone-development , development , lignin-biosynthesis , lignin , transcription-factor , shoot , meristem , inflorescence , shoot-apical-meristem
Literature:
- The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis . DOI: 10.1111/tpj.12581 ; PMID: 24923192
- BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice . DOI: 10.1111/tpj.14230 ; PMID: 30657229
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os05g38120.1
AGGGTCCAGGAGGACCTCGCCCCCCTCCTCCTCCTCGTCGCACGACCAGACCAGCAGCACCAACTCCCTTTCTGCCTTTCGCTTTCACTGCTCAGTGCTGCTCCTACACACCATTTCCCCGTCCGTCCTTCGCCCCCCGCGTCTCTTTTCCGCACCCATCTGCTGCAGCTGCGCACCTTTAATTTGCAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGCAAGGCCCCCCCGAGCGCAACAGCTAGCCCAACACACCTCCTCCATCACCACCGAGAAGGCAACGCATATCAAAAGCGCGGGCGCAAAGCAAAGATAACATCAGATCAGGTCGGCGCCCCCCGCTCCCGGCTGCCGCAAAGCCCACCCGATCGATCGATCGACGCCTCGTTCTCCTCCTCCTCCGAGGCTACTCTCTGCAGGGCGCTCGCTTACGTCTGCCTCTGCGTACGTGCACCGCCCAGCGCGGGCGCCATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGAGGCGGCGAGCATCAGCATCAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGGCAGCTGTACCACGTGCCGCAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCACCCGGCGGAGTCGCCGCCGCCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTACTCCTACGCGTCGTCCTCGTCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAGTTGGTGGCGCATGGGATGCCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGCCAGAACTTCGCGCTGTCGCTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGGCAGTTTGGCGGCGGCGGCGGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGCTACGCCGCCGTGCTCGGGCGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAGATCTGCGACGTCGGCGGCCGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTCGACGTAGACGCCATGGACGCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGCGCCGTCGCGGACGCGGTCACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTCATCTCGCTTATGGAAGACGTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCTGTAGTATCGTCCTTTGAGACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATGGCTCTTAGGACAATGTCGAAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTGCGCAATACGGGCAAGGGTGCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTTGGGCTTATGGGCGGCGGCGCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAACCTCACAACATATGGCGCCCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGTGCATGGCTATTCGAACACTTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTTGCTAAACAGACAGGATTAACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTTAGGCTCTGGAAGCCAATGGTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAGAATCCGTCTCTTGACAAGAATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGCAGCGGGAAGCCCTGTGATCCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGGAATCACAGCATCTCCGCCTCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGACATCTCCGGTCAGGTGAGCTTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATGGCGCACCACCACCAACCTGACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTCTCACTCACCCTTGGCCTTCACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTACGTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGACTTTGTTGGTTGAAGAGCAGATATGATTGTTTCACCAAGGAGATCGGTGGTGATTATTGTAGGATGCAGATGTATGATCTACCTATATTGTAGTTGGAAGTAGGAGGTGAAGAAAAGAGGGGCATTGGCACGCCTGTCGTAGATCCACGAATGCTTGTCGATATTTGACATTGTGGGGCTATAGAGAGCATATGACTATACCTTTGAAGACCTGTTTGTAGTGTTGTTCCCTATTTGTTCTGATCCGCGGTTAAGCCGTGTTAACCCTGTACTATTCATCTGACTTGCAAATGTGGTTGCTCCCACTCTGGCAAATAAAGGGTGCTCAGTTAATTTGTCGCCAGCAAGA
CDS Sequence
- >LOC_Os05g38120.1
ATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGAGGCGGCGAGCATCAGCATCAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGGCAGCTGTACCACGTGCCGCAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCACCCGGCGGAGTCGCCGCCGCCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTACTCCTACGCGTCGTCCTCGTCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAGTTGGTGGCGCATGGGATGCCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGCCAGAACTTCGCGCTGTCGCTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGGCAGTTTGGCGGCGGCGGCGGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGCTACGCCGCCGTGCTCGGGCGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAGATCTGCGACGTCGGCGGCCGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTCGACGTAGACGCCATGGACGCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGCGCCGTCGCGGACGCGGTCACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTCATCTCGCTTATGGAAGACGTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCTGTAGTATCGTCCTTTGAGACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATGGCTCTTAGGACAATGTCGAAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTGCGCAATACGGGCAAGGGTGCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTTGGGCTTATGGGCGGCGGCGCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAACCTCACAACATATGGCGCCCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGTGCATGGCTATTCGAACACTTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTTGCTAAACAGACAGGATTAACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTTAGGCTCTGGAAGCCAATGGTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAGAATCCGTCTCTTGACAAGAATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGCAGCGGGAAGCCCTGTGATCCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGGAATCACAGCATCTCCGCCTCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGACATCTCCGGTCAGGTGAGCTTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATGGCGCACCACCACCAACCTGACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTCTCACTCACCCTTGGCCTTCACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTACGTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGACTTTGTTGGTTGA
Protein Sequence
- >LOC_Os05g38120.1
MSSAAGGGGGYGGGGGEHQHQQQQHHLLLGQAAGQLYHVPQHSRREKLRFPPDHPAESPPPPPPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLSSASSNPPPTPRRQFGGGGGGGGAAGPYGPFTGYAAVLGRSRFLGPAQKLLEEICDVGGRPAQLDRGSDEGLLDVDAMDAAGSVDHEMDGSDRAVADAVTVSGAEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQLRNTGKGATKDGLGKEDTTNFGLMGGGAGLLRGNNVNSFSQPHNIWRPQRGLPERAVSVLRAWLFEHFLHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVRLWKPMVEEIHNLEMRQLQKNPSLDKNQLSMQHTQHSSDSSGKPCDPSNSLQGQSSSMTRNHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIGTGGAANAGGVSLTLGLHQNNNRAYIAEPLPAALPLNLAHRFGLEDVSDAYVMSSFGGQDRHFTKEIGGHLLHDFVG*