Information report for SH5;RI
Gene Details
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Functional Descriptions
- The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.
- Gene isolation revealed that RI encodes a BELL1-type homeodomain transcRIption factor, similar to Arabidopsis PENNYWISE/ BELLRINGER/REPLUMLESS, and is expressed in the specific regions within the inflorescence and branch meRIstems where their descendant meRIstems would soon initiate.
- In addition, both RI and RIL1 seem to be involved in meRIstem maintenance, because the RI RIl1 double mutant failed to establish or maintain the shoot apical meRIstem duRIng embryogenesis.
- DuRIng early inflorescence development, the timing and arrangement of pRImary branch meRIstem (pBM) initiation was disturbed in both RI and RI RIl1/+ plants.
- Genetic combination of an RI homozygote and a mutant allele of RI-LIKE1 (RIL1) (designated RI RIl1/+ plant), a close paralog of RI, enhanced the RI inflorescence phenotype, including the abnormalities in branch phyllotaxy and rachis internode patterning.
Functional Keywords
Literature and News
- The BEL1-type homeobox gene SH5 induces seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis . DOI: 10.1111/tpj.12581 ; PMID: 24923192
- BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice . DOI: 10.1111/tpj.14230 ; PMID: 30657229
Gene Resources
- UniProt: A0A0N7KKW5
- EMBL: AC111016, AP008211
- AlphaFoldDB: A0A0N7KKW5
- EnsemblPlants: Os05t0455200-01
- Gramene: Os05t0455200-01
- KEGG: dosa:Os05g0455200, osa:4338977
- Orthologous matrix: YNGLATH
- InterPro: IPR001356, IPR006563, IPR008422
- PANTHER: PTHR11850
- SUPFAM: SSF46689
- PROSITE: PS50071
- Gene3D: 1.10.10.60
- OrthoDB: A0A0N7KKW5
- SWISS-MODEL: A0A0N7KKW5
- Conserved Domain Database: cd00086
Sequences
cDNA Sequence
- >LOC_Os05g38120.1
AGGGTCCAGGAGGACCTCGCCCCCCTCCTCCTCCTCGTCGCACGACCAGACCAGCAGCACCAACTCCCTTTCTGCCTTTCGCTTTCACTGCTCAGTGCTGCTCCTACACACCATTTCCCCGTCCGTCCTTCGCCCCCCGCGTCTCTTTTCCGCACCCATCTGCTGCAGCTGCGCACCTTTAATTTGCAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGCAAGGCCCCCCCGAGCGCAACAGCTAGCCCAACACACCTCCTCCATCACCACCGAGAAGGCAACGCATATCAAAAGCGCGGGCGCAAAGCAAAGATAACATCAGATCAGGTCGGCGCCCCCCGCTCCCGGCTGCCGCAAAGCCCACCCGATCGATCGATCGACGCCTCGTTCTCCTCCTCCTCCGAGGCTACTCTCTGCAGGGCGCTCGCTTACGTCTGCCTCTGCGTACGTGCACCGCCCAGCGCGGGCGCCATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGAGGCGGCGAGCATCAGCATCAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGGCAGCTGTACCACGTGCCGCAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCACCCGGCGGAGTCGCCGCCGCCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTACTCCTACGCGTCGTCCTCGTCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAGTTGGTGGCGCATGGGATGCCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGCCAGAACTTCGCGCTGTCGCTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGGCAGTTTGGCGGCGGCGGCGGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGCTACGCCGCCGTGCTCGGGCGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAGATCTGCGACGTCGGCGGCCGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTCGACGTAGACGCCATGGACGCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGCGCCGTCGCGGACGCGGTCACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTCATCTCGCTTATGGAAGACGTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCTGTAGTATCGTCCTTTGAGACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATGGCTCTTAGGACAATGTCGAAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTGCGCAATACGGGCAAGGGTGCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTTGGGCTTATGGGCGGCGGCGCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAACCTCACAACATATGGCGCCCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGTGCATGGCTATTCGAACACTTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTTGCTAAACAGACAGGATTAACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTTAGGCTCTGGAAGCCAATGGTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAGAATCCGTCTCTTGACAAGAATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGCAGCGGGAAGCCCTGTGATCCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGGAATCACAGCATCTCCGCCTCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGACATCTCCGGTCAGGTGAGCTTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATGGCGCACCACCACCAACCTGACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTCTCACTCACCCTTGGCCTTCACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTACGTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGACTTTGTTGGTTGAAGAGCAGATATGATTGTTTCACCAAGGAGATCGGTGGTGATTATTGTAGGATGCAGATGTATGATCTACCTATATTGTAGTTGGAAGTAGGAGGTGAAGAAAAGAGGGGCATTGGCACGCCTGTCGTAGATCCACGAATGCTTGTCGATATTTGACATTGTGGGGCTATAGAGAGCATATGACTATACCTTTGAAGACCTGTTTGTAGTGTTGTTCCCTATTTGTTCTGATCCGCGGTTAAGCCGTGTTAACCCTGTACTATTCATCTGACTTGCAAATGTGGTTGCTCCCACTCTGGCAAATAAAGGGTGCTCAGTTAATTTGTCGCCAGCAAGA
CDS Sequence
- >LOC_Os05g38120.1
ATGTCGTCCGCCGCGGGGGGAGGAGGAGGGTACGGGGGCGGAGGCGGCGAGCATCAGCATCAGCAGCAGCAGCACCACCTGCTGCTTGGGCAGGCGGCGGGGCAGCTGTACCACGTGCCGCAGCACAGCCGGCGGGAGAAGCTGCGGTTCCCGCCCGACCACCCGGCGGAGTCGCCGCCGCCGCCGCCGCCCGGGTCGTGGCCGCTGCCCCCGGCGTTCTACTCCTACGCGTCGTCCTCGTCATCGTACTCGCCGCACAGCCCGACGCTGGCGCACGCGCAGTTGGTGGCGCATGGGATGCCGCCGGGGGCCGCGACGAGCGGAGGGGCCCAGATCCCGAGCCAGAACTTCGCGCTGTCGCTGTCGTCGGCGTCCTCGAACCCTCCGCCCACGCCGAGGAGGCAGTTTGGCGGCGGCGGCGGCGGCGGCGGGGCCGCCGGGCCGTACGGGCCCTTCACGGGCTACGCCGCCGTGCTCGGGCGGTCCAGGTTCTTGGGCCCCGCGCAGAAGCTGCTCGAGGAGATCTGCGACGTCGGCGGCCGCCCCGCGCAGCTTGACAGGGGCTCCGACGAGGGTTTGCTCGACGTAGACGCCATGGACGCCGCGGGAAGCGTCGACCACGAGATGGACGGCAGCGATCGCGCCGTCGCGGACGCGGTCACGGTCTCCGGCGCCGAGCAGCAGTGGAGGAAGACTAGGCTCATCTCGCTTATGGAAGACGTTTGCAAGCGATACAGGCAATACTACCAGCAACTCCAAGCTGTAGTATCGTCCTTTGAGACTGTTGCGGGTCTGAGCAATGCTGCTCCTTTTGCTTCCATGGCTCTTAGGACAATGTCGAAGCATTTCAAGTATTTGAAGGGCATTATACTGAACCAGCTGCGCAATACGGGCAAGGGTGCTACAAAAGATGGTCTCGGCAAGGAAGACACAACAAACTTTGGGCTTATGGGCGGCGGCGCTGGCCTACTAAGGGGAAACAATGTGAATTCGTTTAGCCAACCTCACAACATATGGCGCCCGCAAAGAGGGCTACCAGAGCGTGCTGTTTCGGTTCTTCGTGCATGGCTATTCGAACACTTCCTGCACCCGTATCCAACTGACAGCGATAAGCAGATGCTTGCTAAACAGACAGGATTAACTAGGAACCAGGTATCGAACTGGTTTATCAATGCAAGGGTTAGGCTCTGGAAGCCAATGGTTGAAGAAATTCACAACCTCGAGATGAGGCAGCTGCAGAAGAATCCGTCTCTTGACAAGAATCAGCTCTCCATGCAGCACACCCAACATTCGTCGGACAGCAGCGGGAAGCCCTGTGATCCATCAAACTCGCTGCAAGGGCAAAGTAGCAGCATGACCAGGAATCACAGCATCTCCGCCTCCCGGCACATCGAGGACGGCCTCTCCCAGATGCCCCATGACATCTCCGGTCAGGTGAGCTTCGCATACAACGGGCTCGCCGCGCATCACAGCATCGCGATGGCGCACCACCACCAACCTGACCTCATTGGCACCGGTGGTGCCGCGAATGCTGGCGGTGTCTCACTCACCCTTGGCCTTCACCAGAACAATAACCGAGCTTACATTGCTGAGCCCCTTCCGGCCGCGCTTCCGCTCAATCTTGCCCATCGTTTCGGACTGGAGGACGTTAGTGATGCCTACGTGATGAGCTCATTTGGTGGTCAGGACCGGCATTTCACCAAGGAGATCGGTGGCCATTTGCTCCATGACTTTGTTGGTTGA
Protein Sequence
- >LOC_Os05g38120.1
MSSAAGGGGGYGGGGGEHQHQQQQHHLLLGQAAGQLYHVPQHSRREKLRFPPDHPAESPPPPPPGSWPLPPAFYSYASSSSSYSPHSPTLAHAQLVAHGMPPGAATSGGAQIPSQNFALSLSSASSNPPPTPRRQFGGGGGGGGAAGPYGPFTGYAAVLGRSRFLGPAQKLLEEICDVGGRPAQLDRGSDEGLLDVDAMDAAGSVDHEMDGSDRAVADAVTVSGAEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQLRNTGKGATKDGLGKEDTTNFGLMGGGAGLLRGNNVNSFSQPHNIWRPQRGLPERAVSVLRAWLFEHFLHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVRLWKPMVEEIHNLEMRQLQKNPSLDKNQLSMQHTQHSSDSSGKPCDPSNSLQGQSSSMTRNHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIGTGGAANAGGVSLTLGLHQNNNRAYIAEPLPAALPLNLAHRFGLEDVSDAYVMSSFGGQDRHFTKEIGGHLLHDFVG*