Information report for AT3G12900
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009805 — acts upstream of or within — coumarin biosynthetic process
- GO:0106147 — acts upstream of or within — fraxetin biosynthesis
- GO:0051213 — enables — dioxygenase activity
- GO:0016706 — enables — 2-oxoglutarate-dependent dioxygenase activity
- GO:0106145 — enables — scopoletin 8-hydroxylase activity
- GO:0010039 — acts upstream of or within — response to iron ion
- GO:0005737 — located in — cytoplasm
Functional Keywords
Literature and News
- Cesium toxicity in Arabidopsis. DOI: 10.1104/pp.104.046672 ; PMID: 15489280
- The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. DOI: 10.1105/tpc.104.024315 ; PMID: 15539473
- Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. DOI: 10.1104/pp.106.082073 ; PMID: 16998091
- An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness. DOI: 10.1534/genetics.106.061044 ; PMID: 17028341
- The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. DOI: 10.1534/genetics.106.061374 ; PMID: 17028338
- Manganese deficiency alters the patterning and development of root hairs in Arabidopsis. DOI: 10.1093/jxb/ern195 ; PMID: 18772308
- Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis. DOI: 10.1093/jxb/erq203 ; PMID: 20627899
Gene Resources
- UniProt: A0A384KU43
- EMBL: LUHQ01000003
- AlphaFoldDB: A0A384KU43
- EnsemblPlants: AT3G12900.1
- Gramene: AT3G12900.1
- KEGG: ath:AT3G12900
- Orthologous matrix: WPNQCKE
- ExpressionAtlas: AT3G12900
- InterPro: IPR005123, IPR026992, IPR027443
- PANTHER: PTHR10209, PTHR10209:SF230
- SUPFAM: SSF51197
- PROSITE: PS51471
- Gene3D: 2.60.120.330
- SWISS-MODEL: A0A384KU43
Homologs
- Actinidia chinensis Achn004841
- Brassica napus BnaTT18.A01, BnaTT18.A03, BnaTT18.C01, BnaTT18.C07
- Citrullus lanatus Cla97C03G058120
- Cucumis melo MELO3C002735
- Glycine max GmF3H1
- Malus domestica MdACO1
- Oryza sativa OsSAH3;OsS5H1, OsF3H04g;OsSAH2, SLC1, SLC2, OsF3H03g;OsS5H2, FLS
- Setaria viridis SEVIR_3G184400v2
- Zea mays GRMZM2G022679
Sequences
cDNA Sequence
- >AT3G12900.1
TCGTTACTATTTATATCCGCTTCAAATTGTTACTTTTCAACATTCACTTTTCAATATTCAACCAAAAAACAAAAACAAAAAACATTCAGTTTTCAAGCAGAAGTGTGGAGACAATGGGTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCAGAGAAGGTAACGGCGTGAAAGGAATGATAGACTCGGGCCTCTCTAGTGTTCCACGGCCCTTCGTCCAGCCTCTCTCTGAGCGAATCCCGACCCAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGATCTTTCCAACCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATTGTCGAAGCTGCCGAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAGTTGCTAAAATCGTCGGCTCATGAGTTTTTTGCACAAGCTCCTGAGGAAAAATCGATGTACCTGAAGGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTTGTGCCAGATAAGGAGAAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTTCAACACTGGCCTCAACCATGCAGGGAGGTGGCACTTGAGTTCCTAAATTCATCGATGGAAATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAGAAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCTACTTGTCCGAGCCCCGAGCTGACCGTCGGCGTCGGCCGTCACTCAGACATGGGAATGTTGACCGTTTTATTACAAGACGGCATTGGTGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATCCCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAATGGGAAGTACAAAAGTGCGGAGCATAGGGTTCGAACCACAAACATCGGATCAAGAGTCTCTGTGCCCATTTTCACGGCACCAAATCCCTCCCAGAAGGTCGGTCCCTTGCCGGAAGTTGTGAAACGCGACGGAGTGGCTCGTTACAAGGAGTTTTTGTTTCAAGACTACATGAATAACTTCTTCGGCCAACCACACGACGGCAAAAAATCTCTCGACTTCGCACGTGCCGAGTGATACTATCAGCAGTTGCCACGTACTAATCAACCACAACTACGCGACACAGTTTCCTTTTTATCCTTGTTCTTTTTCTATCCCAGTTCCCACGTTACAAGGAGTTGTATTGTTTTCCATTTTTGTTTTCTTTTCTTTTTGATGTAACTTTTTATCCTTCTTCGATCCATGTTTTTATTTTTGTACAATTTACAAATTAATAAAAGTTGCCTTCTTCGTGTGCATTCTTAAA
CDS Sequence
- >AT3G12900.1
ATGGGTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCAGAGAAGGTAACGGCGTGAAAGGAATGATAGACTCGGGCCTCTCTAGTGTTCCACGGCCCTTCGTCCAGCCTCTCTCTGAGCGAATCCCGACCCAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGATCTTTCCAACCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATTGTCGAAGCTGCCGAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAGTTGCTAAAATCGTCGGCTCATGAGTTTTTTGCACAAGCTCCTGAGGAAAAATCGATGTACCTGAAGGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTTGTGCCAGATAAGGAGAAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTTCAACACTGGCCTCAACCATGCAGGGAGGTGGCACTTGAGTTCCTAAATTCATCGATGGAAATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAGAAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCTACTTGTCCGAGCCCCGAGCTGACCGTCGGCGTCGGCCGTCACTCAGACATGGGAATGTTGACCGTTTTATTACAAGACGGCATTGGTGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATCCCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAATGGGAAGTACAAAAGTGCGGAGCATAGGGTTCGAACCACAAACATCGGATCAAGAGTCTCTGTGCCCATTTTCACGGCACCAAATCCCTCCCAGAAGGTCGGTCCCTTGCCGGAAGTTGTGAAACGCGACGGAGTGGCTCGTTACAAGGAGTTTTTGTTTCAAGACTACATGAATAACTTCTTCGGCCAACCACACGACGGCAAAAAATCTCTCGACTTCGCACGTGCCGAGTGA
Protein Sequence
- >AT3G12900.1
MGINFEDQTTLFNFVVREGNGVKGMIDSGLSSVPRPFVQPLSERIPTQKALTCEATQPIDLSNLDGPQHKEVAKQIVEAAETLGFFQVVNHGVSVELLELLKSSAHEFFAQAPEEKSMYLKEVSPSKLVKYGTSFVPDKEKAIEWKDYVSMLYTNDSEALQHWPQPCREVALEFLNSSMEMVKNVVNILMENVGVTLEEEKMNGLMGTKMVNMNYYPTCPSPELTVGVGRHSDMGMLTVLLQDGIGGLYVKLDNGEWAEIPPVHGALVINIGDTLQILSNGKYKSAEHRVRTTNIGSRVSVPIFTAPNPSQKVGPLPEVVKRDGVARYKEFLFQDYMNNFFGQPHDGKKSLDFARAE