Gene Details:

• Gene ID: AT1G04080
• Gene Symbol: PRP39, PRP39a
• Gene Name:
• Description: Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
• TAIR Accession: locus:2020265
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT1G04080.1     AT1G04080.2     AT1G04080.3     AT1G04080.4     AT1G04080.5

Plant Ontology Annotations:

• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000230  — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
• PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
• PO:0009030  — carpel — carpelo (Spanish, exact), 心皮 (Japanese, exact), Poaceae carpel (narrow), Zea carpel (narrow), pistil (broad)
• PO:0009032  — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0000229  — flower meristem — floral meristem (exact), mersitema floral (Spanish, exact), 花芽分裂組織 (Japanese, exact), floral apical meristem (related), Poaceae floret meristem (narrow), ear floret meristem (narrow), floret meristem (narrow), tassel floret meristem (narrow)
• PO:0006079  — shoot system meristem — meristema del epiblasto (epiblastema) (Spanish, exact), シュート分裂組織 (Japanese, exact)
• PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009049  — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0000395  — involved in — mRNA 5-splice site recognition GO:0000395 15978 P other cellular processes IBA none PANTHER:PTN000425278|SGD:S000004509 Communication:501741973 2021-03-31 AT1G04080 gene:5019473861 AT1G04080.2 located in nucleus GO:0005634 537 C nucleus ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT1G04080 locus:2020265 AT1G04080 acts upstream of or within photoperiodism, flowering GO:0048573 21196 P post-embryonic development IMP none Publication:501721225|PMID:17380304 2022-02-08 AT1G04080 locus:2020265 AT1G04080 involved in mRNA 5-splice site recognition
• GO:0006397  — involved in — mRNA processing
• GO:0071004  — part of — U2-type prespliceosome
• GO:0000395  — involved in — mRNA 5-splice site recognition

Germplasm Phenotype:

• CS69936  — Elevated levels of GFP protein compared to wild-type T line (CS69640) due to preferential splicing of a U2-type AT-AC intron in GFP pre-mRNA. Somewhat delayed flowering, shorter stature, and reduced seed set compared to CS69640.
• CS69937  — Elevated levels of GFP protein compared to wild-type T line (CS69640) due to preferential splicing of a U2-type AT-AC intron in GFP pre-mRNA. Somewhat delayed flowering, shorter stature, and reduced seed set compared to CS69640.
• CS69938  — Elevated levels of GFP protein compared to wild-type T line (CS69640) due to preferential splicing of a U2-type AT-AC intron in GFP pre-mRNA. Somewhat delayed flowering, shorter stature, and reduced seed set compared to CS69640.
• CS69939  — Elevated levels of GFP protein compared to wild-type T line (CS69640) due to preferential splicing of a U2-type AT-AC intron in GFP pre-mRNA. Somewhat delayed flowering, shorter stature, and reduced seed set compared to CS69640.
• prp39-1-1  — Mutant plants are indistinguishable from WT, except for a delay in time to flowering measured as the number of days to bolting and the total leaf numbers at flowering. On average, the mutant plants flower 10 days and 44 days later than WT plants under long day and short day growth conditions, respectively.
• prp39-1-1  — The mutant is responsive to a vernalization treatment, the treated mutant plants flowering earlier than mutant plants not subjected to the vernalizaiton treatment.
• prp39-1-1  — The mutant plants treated with GA flowered earlier than the at prp39-1-1 plants without GA treatment and at similar times as wild-type plants without GA treatment.
• prp39-1-2  — Mutant plants are indistinguishable from WT, except for a delay in time to flowering measured as the number of days to bolting and the total leaf numbers at flowering. On average, the mutant plants flower 10 days and 44 days later than WT plants under long day and short day growth conditions, respectively.

Function-related keywords:

• cauline leaf ,  inflorescence meristem ,  seed ,  carpel ,  petal ,  stem ,  pollen ,  flower meristem ,  shoot system meristem ,  fruit ,  root ,  seed ,  vascular leaf ,  inflorescence ,  plant sperm cell ,  guard cell

Literature:

• Transgenic expression of MYB15 confers enhanced sensitivity to abscisic acid and improved drought tolerance in Arabidopsis thaliana.   DOI:  10.1016/S1673-8527(09)60003-5 ;  PMID:  19161942
• Loss of halophytism by interference with SOS1 expression.   DOI:  10.1104/pp.109.137802 ;  PMID:  19571313
• STH2 has 2 B there: An insight into the role of B-box containing proteins in Arabidopsis.   DOI:  10.4161/psb.3.8.5695 ;  PMID:  19704462
• Does light taste salty?   DOI:  10.4161/psb.3.1.4925 ;  PMID:  19704777
• Manipulation of alternative oxidase can influence salt tolerance in Arabidopsis thaliana.   DOI:  10.1111/j.1399-3054.2009.01305.x ;  PMID:  19941623
• Overexpression of soybean ubiquitin-conjugating enzyme gene GmUBC2 confers enhanced drought and salt tolerance through modulating abiotic stress-responsive gene expression in Arabidopsis.   DOI:  10.1007/s11103-009-9575-x ;  PMID:  19941154
• The Arabidopsis B-box zinc finger family.   DOI:  10.1105/tpc.109.069088 ;  PMID:  19920209
• Dynamic aspects of ion accumulation by vesicle traffic under salt stress in Arabidopsis.   DOI:  10.1093/pcp/pcp143 ;  PMID:  19880402
• Variation in salinity tolerance and shoot sodium accumulation in Arabidopsis ecotypes linked to differences in the natural expression levels of transporters involved in sodium transport.   DOI:  10.1111/j.1365-3040.2009.02105.x ;  PMID:  20040066

Sequences: