Information report for ZmSCR
Gene Details
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Functional Descriptions
- Zea mays SCARECROW (ZmSCR), the putative maize SCR ortholog, was used as a molecular marker to investigate radial patterning during regeneration of the root tip after either whole or partial excision.
- Expression of the putative maize ortholog Zea mays SCARECROW (ZmSCR) is localized to the endodermal cell layer, suggesting that SCR plays a similar role in conserved pathways involved in regulation of the radial patterning of the diverse RAMs in these two species.
- ZmSCR is utilized in common developmental mechanisms that give rise to all root types in maize.
- ZmSCR regulates the radial organization of the root.
- ZmSCR mRNA expresses in endodermis and quiescent center of root, influencing radial pattern.
Functional Keywords
Literature and News
- Molecular analysis of the SCARECROW gene in maize reveals a common basis for radial patterning in diverse meristems. DOI: 10.1105/tpc.12.8.1307 ; PMID: 10948251
- C(4) leaf development and evolution. DOI: 10.1016/j.pbi.2023.102454 ; PMID: 37743123
- A key to totipotency: Wuschel-like homeobox 2a unlocks embryogenic culture response in maize (Zea mays L.). DOI: 10.1111/pbi.14098 ; PMID: 37357571
Gene Resources
- NCBI ID: 100382261
- UniProt accessions: Q9FUZ7
- EMBL: AF263457
- AlphaFoldDB: Q9FUZ7
- EnsemblPlants: Zm00001eb195650_T001
- Gramene: Zm00001eb195650_T001
- KEGG: zma:100382261
- OMA: MEIQTGA
- ExpressionAtlas: Zm00001eb195650
- InterPro: IPR005202
- PANTHER: PTHR31636
- PROSITE: PS50985
- OrthoDB: Q9FUZ7
- SMR: Q9FUZ7
Homologs
- Hordeum vulgare: MLOC_64716.1
- Oryza sativa: OsSCR;OsSCR2, OsSCR1
- Panicum virgatum: Pavir.8KG002600.1.p, Pavir.3KG003000.1.p, Pavir.8NG019700.1.p
- Setaria italica: Seita.7G305500.1.p, Seita.8G008700.1.p
- Setaria viridis: Sevir.8G008100.1.p
- Triticum aestivum: Traes_5BL_C02570726.1, Traes_4DS_2CE9E3235.1
Sequences
cDNA Sequence
- >Zm00001eb195650_T001
GCGGCGTCTTCCTCTTTACTCCTCCCGCTCTCCCTCCCTCGCACCGTCCGTCTGCTAGCTCAGCCTACTCACTCCACTCAACTCACCCCCAACTCCACTCCGCTCCCGAGCCCGGACTGACTGACTGACTGTGGTGGTGGTGGTGCATCAGCAGCCCGCGCGGCGCCAAAACACGCAAACTGCTCCCTCCCTCACTCACCCCTATCCCCCGCGCTGGGTCGCCCGATCGCCATGCGCGCGGCGGCTTCCTCTTGGCGTTTCTAGATGGGCTCCTCCTCCTCCCTCCTCTTCTCCTCGTCCTCCTCCGCCGCATCCACCGCCCCCCACTCCTTTCCCCACTCTCATGCCACCGCCACCGCCTCCGCCTCCTCTCACTCCTTATTGCCGCCGCTGCCCTCCCCCACACCTCCCTCCGCCTCCTCCTTCTTCCCCAAACCACTTCCTCCTCCACTACCTCCATCAGCTAGACCACCAAGAAGCCGCCGCCGCCGCCATGGTCCGCAAGCGCCCCGCGTCCGACATGGACCTCCCGCCGCCGCGCCGCCACGTCACGGGCGACCTCTCCGACGTCACGGCGGCCGCTGCCGCCGGTGTTGGTGGTAGTGGCGCGCCGTCCTCCGCCAGCGCGCAGCTGCCCGCGCTGCCCACCCAGCTCCACCAGCTGCCCCCCGCGTTCCAGCACCACGCGCCGGAGGTGGACGTGCCCGCGCACCCGGCCCCGGCCGCCCACGCGCAGGCGGGCGGCGAGGCAACCGCGTCCACGACCGCGTGGGTGGACGGCATCATCCGCGACATCATCGGGAGCAGCGGCGGCGCCGCGGTCTCCATCACGCAGCTCATCCACAACGTCCGCGAGATCATCCACCCCTGCAACCCCGGCCTCGCGTCGCTCCTGGAGCTCCGCCTCCGCTCCCTCCTCGCAGCCGACCCGGCCCCACTGCCGCCGCCGCCGCAGCCGCAGCAGCATGCTCTCCTGCACGGCGCTCCGGCCGCCGCTCCCGCGGGGCTGACGCTCCCTCCCCCGCCACCGCTTCCGGACAAGCGCCGCCACGAGCATCCACCGCCGTGCCAGCAGCAACAGCAGGAGGAACCGCATCCGGCGCCGCAGTCGCCCAAGGCCCCGACCGCGGAAGAGACCGCAGCGGCGGCCGCCGCCGCACAAGCAGCAGCTGCTGCGGCCGCCAAGGAGCGGAAGGAGGAGCAGCGGCGGAAGCAGCGCGACGAGGAGGGCCTCCACCTGCTGACGCTGCTGCTGCAGTGCGCCGAGGCCGTGAACGCGGACAACCTGGACGACGCGCACCAGACGCTGCTGGAGATCGCGGAGCTAGCGACGCCGTTCGGCACCTCGACGCAGCGCGTGGCCGCCTACTTCGCGGAGGCCATGTCGGCGCGGCTCGTCAGCTCCTGCCTGGGCCTGTACGCGCCGCTGCCGCCGGGCTCCCCCGCCGCGGCGCGCCTCCACGGCCGCGTCGCCGCCGCGTTCCAGGTGTTCAACGGCATCAGCCCCTTCGTCAAGTTCTCGCACTTCACCGCCAACCAGGCCATCCAGGAGGCGTTCGAGCGGGAGGAGCGCGTGCACATCATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGGCTCTTCCACATCCTTGCCTCCCGCCCCGGGGGCCCGCCCAGGGTGAGGCTCACCGGCCTCGGGGCGTCCATGGAGGCGCTCGAGGCCACGGGGAAGCGCCTCTCCGATTTCGCCGACACGCTCGGCCTGCCCTTCGAGTTCTGCGCCGTCGCCGAGAAGGCCGGCAATGTTGACCCGGAGAAGCTAGGGGTCACGAGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTCTACGACGTCACTGGCTCCGACTCCAACACGCTCTGGCTCATCCAAAGGCTGGCCCCCAAGGTGGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTCCTGGCGCGCTTCGTGGAGGCCATCCACTACTACTCGGCGCTGTTCGACTCGCTGGACGCGAGCTACGGCGAGGACAGCCCCGAGCGGCACGTCGTGGAGCAGCAGCTGCTGTCGCGGGAGATCCGCAACGTGCTGGCCGTGGGCGGGCCGGCCCGCACCGGCGACGTCAAGTTCGGCAGCTGGCGCGAGAAGCTGGCGCAGTCCGGGTTCCGCGCCGCCTCGCTCGCCGGCAGCGCCGCGGCGCAGGCGTCCCTGCTGCTCGGCATGTTCCCCTCCGACGGGTACACGCTGGTGGAGGAGAACGGCGCGCTGAAGCTCGGGTGGAAGGACCTCTGCCTGCTCACCGCGTCGGCCTGGCGCCCCATCCAGGTGCCGCCGTGCCGTTGATGAGACCTCTGCCTGCTCCTGCTTGCGTTGAGAGGCCGCCACTCCACTTGTTTTGCATCTGTAGCTGCTCGGTTTGGTCATCAGCTGGGAGATAAGAAAAGCGGAAACGTACTAATTGCTCTGGAGTAGATCCATCCATTCACAGTGATAGTTACTGATGTACTAAGCTTTAATTAGTTCAATGCTAGATCGTTCTTGTTCAGGTGTCGATCGCGTATCCTTGTCCTTGGTCTCCTTTTCATTTTGGTGCTTTGTCTAGTCGCTTTCCCGACTAATGCCGTGCTCTTCATGCGCGTTCTAGTGAAGATTCTTGCCGAGAATATTAGCATAGTTTTCATGTAAAGTAGCCATCAAGCAAGTATTAATTTGTGGCTACTTCAATGACATCCTAAGGCCATGTTTTGAACACCTTTTGCATCCTAATCCTAGAATC
CDS Sequence
- >Zm00001eb195650_T001
ATGCCACCGCCACCGCCTCCGCCTCCTCTCACTCCTTATTGCCGCCGCTGCCCTCCCCCACACCTCCCTCCGCCTCCTCCTTCTTCCCCAAACCACTTCCTCCTCCACTACCTCCATCAGCTAGACCACCAAGAAGCCGCCGCCGCCGCCATGGTCCGCAAGCGCCCCGCGTCCGACATGGACCTCCCGCCGCCGCGCCGCCACGTCACGGGCGACCTCTCCGACGTCACGGCGGCCGCTGCCGCCGGTGTTGGTGGTAGTGGCGCGCCGTCCTCCGCCAGCGCGCAGCTGCCCGCGCTGCCCACCCAGCTCCACCAGCTGCCCCCCGCGTTCCAGCACCACGCGCCGGAGGTGGACGTGCCCGCGCACCCGGCCCCGGCCGCCCACGCGCAGGCGGGCGGCGAGGCAACCGCGTCCACGACCGCGTGGGTGGACGGCATCATCCGCGACATCATCGGGAGCAGCGGCGGCGCCGCGGTCTCCATCACGCAGCTCATCCACAACGTCCGCGAGATCATCCACCCCTGCAACCCCGGCCTCGCGTCGCTCCTGGAGCTCCGCCTCCGCTCCCTCCTCGCAGCCGACCCGGCCCCACTGCCGCCGCCGCCGCAGCCGCAGCAGCATGCTCTCCTGCACGGCGCTCCGGCCGCCGCTCCCGCGGGGCTGACGCTCCCTCCCCCGCCACCGCTTCCGGACAAGCGCCGCCACGAGCATCCACCGCCGTGCCAGCAGCAACAGCAGGAGGAACCGCATCCGGCGCCGCAGTCGCCCAAGGCCCCGACCGCGGAAGAGACCGCAGCGGCGGCCGCCGCCGCACAAGCAGCAGCTGCTGCGGCCGCCAAGGAGCGGAAGGAGGAGCAGCGGCGGAAGCAGCGCGACGAGGAGGGCCTCCACCTGCTGACGCTGCTGCTGCAGTGCGCCGAGGCCGTGAACGCGGACAACCTGGACGACGCGCACCAGACGCTGCTGGAGATCGCGGAGCTAGCGACGCCGTTCGGCACCTCGACGCAGCGCGTGGCCGCCTACTTCGCGGAGGCCATGTCGGCGCGGCTCGTCAGCTCCTGCCTGGGCCTGTACGCGCCGCTGCCGCCGGGCTCCCCCGCCGCGGCGCGCCTCCACGGCCGCGTCGCCGCCGCGTTCCAGGTGTTCAACGGCATCAGCCCCTTCGTCAAGTTCTCGCACTTCACCGCCAACCAGGCCATCCAGGAGGCGTTCGAGCGGGAGGAGCGCGTGCACATCATCGACCTCGACATCATGCAGGGGCTGCAGTGGCCGGGGCTCTTCCACATCCTTGCCTCCCGCCCCGGGGGCCCGCCCAGGGTGAGGCTCACCGGCCTCGGGGCGTCCATGGAGGCGCTCGAGGCCACGGGGAAGCGCCTCTCCGATTTCGCCGACACGCTCGGCCTGCCCTTCGAGTTCTGCGCCGTCGCCGAGAAGGCCGGCAATGTTGACCCGGAGAAGCTAGGGGTCACGAGGCGGGAGGCCGTCGCCGTCCACTGGCTGCACCACTCGCTCTACGACGTCACTGGCTCCGACTCCAACACGCTCTGGCTCATCCAAAGGCTGGCCCCCAAGGTGGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTCCTGGCGCGCTTCGTGGAGGCCATCCACTACTACTCGGCGCTGTTCGACTCGCTGGACGCGAGCTACGGCGAGGACAGCCCCGAGCGGCACGTCGTGGAGCAGCAGCTGCTGTCGCGGGAGATCCGCAACGTGCTGGCCGTGGGCGGGCCGGCCCGCACCGGCGACGTCAAGTTCGGCAGCTGGCGCGAGAAGCTGGCGCAGTCCGGGTTCCGCGCCGCCTCGCTCGCCGGCAGCGCCGCGGCGCAGGCGTCCCTGCTGCTCGGCATGTTCCCCTCCGACGGGTACACGCTGGTGGAGGAGAACGGCGCGCTGAAGCTCGGGTGGAAGGACCTCTGCCTGCTCACCGCGTCGGCCTGGCGCCCCATCCAGGTGCCGCCGTGCCGTTGA
Protein Sequence
- >Zm00001eb195650_P001
MPPPPPPPPLTPYCRRCPPPHLPPPPPSSPNHFLLHYLHQLDHQEAAAAAMVRKRPASDMDLPPPRRHVTGDLSDVTAAAAAGVGGSGAPSSASAQLPALPTQLHQLPPAFQHHAPEVDVPAHPAPAAHAQAGGEATASTTAWVDGIIRDIIGSSGGAAVSITQLIHNVREIIHPCNPGLASLLELRLRSLLAADPAPLPPPPQPQQHALLHGAPAAAPAGLTLPPPPPLPDKRRHEHPPPCQQQQQEEPHPAPQSPKAPTAEETAAAAAAAQAAAAAAAKERKEEQRRKQRDEEGLHLLTLLLQCAEAVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPGSPAAARLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPEKLGVTRREAVAVHWLHHSLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLSHSGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVKFGSWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWRPIQVPPCR