Gene Details:
- Gene ID: Zm00001eb396030
- Gene Symbol: ZmPHYB2 PhyB2 pge
- Gene Name: phytochromeB2
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- ZmPHYB2 was a hub gene associated with flowering time.
- The functional variations in GL15, ZmPHYB2 and ZmPYL10 that influence kernel row number, flowering time, plant height and ear height.
- Together, these results suggest that Hap4 of ZmPHYB2 is likely to represent a favorable haplotype under selection for early flowering during modern maize breeding.
- Our analyses of the haplotype profiles of several SVs in 137 ILs revealed their contribution to the altered expression patterns and phenotypic differentiation, including the SVs in GL15 for kernel row number, SVs in the promoter of ZmPHYB2 for flowering time, and SVs in ZmPYL10 for plant height and ear height.
Function-related keywords:
Literature:
- Gene expression and expression quantitative trait loci analyses uncover natural variations underlying the improvement of important agronomic traits during modern maize breeding. DOI: 10.1111/tpj.16260 ; PMID: 37186341
- Genetic regulation of self-organizing azimuthal canopy orientations and their impacts on light interception in maize. DOI: 10.1093/plcell/koae007 ; PMID: 38252634
- Breeding maize of ideal plant architecture for high-density planting tolerance through modulating shade avoidance response and beyond. DOI: 10.1111/jipb.13603 ; PMID: 38131117
Related News:
Gene Resources:
- NCBI ID: 100381811
- UniProt accessions: Q6XFQ2 , A0A1D6PBY9 , A0A1D6PBZ0
Sequences:
cDNA Sequence
- >Zm00001eb396030_T001
TGAAGCAAAGCTAAGGTATCGGACGAACACATAGGGGGCGAGCGAGCCGACTGACGAGCACAAGACCGGCGGACGGGGCCGCCTAATCCAGTGAGAGCTCCCCCAAGCGCCATGGCGTCGGACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGTCACGCGCACCACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGAGGAGGTGGCGGGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAACCTAGACGCGCGGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAGTCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCACGCATCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTGTCGCCGCACCACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGTGCCGACGCACGCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCCGCGCGCGAGATATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGCACCGAGGACCCCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGCGTGCGAATGATCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTGTCGCAGCAGCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGTGGTGACGACGAGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCACCAGCTGGCATCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCTGCACTGTATTATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATTAAGGATATTATCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTTGCTGATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATGGCGGTGGCTTATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGAGATGCTGCAGAGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGGAATGCAAAGATTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAATCTAAGGGTGCAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAATTTATCAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCCCCAATTTTCGCATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAACTTACAGGATGGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGAAATTGTTGCCGACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAATGCTATAGAAGGACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGAGCCTTTTGTTTCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGATGCCAGTCTCAAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAACAATGTCATTGTTGAGGGAGAGGGATTTACAACTTATTCGAGATATCCCTGATGAAATCAAGGATGCATCAGCATATGGTGATCAATTTAGAATCCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGCACAGTCTGCTCCATCCGAGAATGGCTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTATGACGGAACAGATACAGAGCTTTTCATCTTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCCGCTGACATTGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACCCAAGAAGGCGTAGGACTAAGCACATGCAGGAAAATCCTCAAATTGATGGGCGGCGAGGTCCAATACATCAGGGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTTGAGCTGCCCCAACCTCGTCTAGCAGCTGGTAGAGAAAATCAGCTGATATGTTAAGATCTGCGCTGACACCACCTAACTTCTAGGTCGATTAGGTAACTTAGGTGGTGTTTGTTTGGGATTATAATCTGCCTAAATTATATAATCAGTGTTAGTTCAAAATAAGGTAGATTATATAATCTGGTCAGATTATAATCCCAAACAAATAGACCCTTAGCTCCCTGATAAGAGGGTGCCTAATTTACAAGAAGCCTGGAAACAAATGAATGCTGCCATGGCAATTCAATGGTTGAGTGTTGATGAGGAGGCTGTTTTTCGGTGCGCCGCTGTAAGTTTGGGTATCCATGCTGTGGTTTCAAGATCAGAGTTCATGGCAGATAGTTATGTACACAGGCGGCAAATTTGGTTCTTAGCTTAGGTTGATGACCAGTTTCACTTAGTACATCTTATATGTATACTAGGTGGATGCCCGTGCGTTGCAACGGGAAGATAAAATATCACGATAACTCATGTACAAATATGTTATAATATTATAGAAAAAGGTTACAAATGTGTTATAATGTTTAGG
CDS Sequence
- >Zm00001eb396030_T001
ATGGCGTCGGACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGTCACGCGCACCACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGAGGAGGTGGCGGGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAACCTAGACGCGCGGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAGTCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCACGCATCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTGTCGCCGCACCACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGTGCCGACGCACGCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCCGCGCGCGAGATATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGCACCGAGGACCCCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGCGTGCGAATGATCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTGTCGCAGCAGCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGTGGTGACGACGAGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCACCAGCTGGCATCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCTGCACTGTATTATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATTAAGGATATTATCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTTGCTGATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATGGCGGTGGCTTATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGAGATGCTGCAGAGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGGAATGCAAAGATTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAATCTAAGGGTGCAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAATTTATCAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCCCCAATTTTCGCATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAACTTACAGGATGGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGAAATTGTTGCCGACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAATGCTATAGAAGGACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGAGCCTTTTGTTTCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGATGCCAGTCTCAAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAACAATGTCATTGTTGAGGGAGAGGGATTTACAACTTATTCGAGATATCCCTGATGAAATCAAGGATGCATCAGCATATGGTGATCAATTTAGAATCCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGCACAGTCTGCTCCATCCGAGAATGGCTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTATGACGGAACAGATACAGAGCTTTTCATCTTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCCGCTGACATTGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACCCAAGAAGGCGTAGGACTAAGCACATGCAGGAAAATCCTCAAATTGATGGGCGGCGAGGTCCAATACATCAGGGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTTGAGCTGCCCCAACCTCGTCTAGCAGCTGGTAGAGAAAATCAGCTGATATGTTAA
Protein Sequence
- >Zm00001eb396030_P001
MASDSRPPKRSPSARRVAPRHAHHHHSQSSGGSTSRAGAGGGGGGAAATESVSKAVAQYNLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPLGCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSVALPPVSLGADARLYFSPSSAVLLERAFAAREISLLNPLWIHSRASSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHEDEHGEVVAESRRDNLEPYLGLHYPATDIPQASRFLFQQNRVRMIADCHAIPVRVIQDPGLSQQLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIISSGGDDERTGRGAISSSMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPAGIITQSPSVMDLVKCDGAALYYRGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAVALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLSWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQRQLGELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKECDDIVEKLLSRALRGEEDKNVEIKLKTFGSEQSKGAIFVIVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLLPPIFASDENTSCSEWNTAMEKLTGWSREEVVGKFLIGEVFGNCCRLKGPDALTKFMVVIHNAIEGHDSEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLQMTDLNDDQRQFLETSSACEKQMSKIVKDASLKSIEDGSLVLEKSEFSLGDVMNAVVSQTMSLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMAQSAPSENGWVEIQVRPNVKQNYDGTDTELFIFRFACPGEGLPADIVQDMFSNSQWSTQEGVGLSTCRKILKLMGGEVQYIRESERSFFLIVLELPQPRLAAGRENQLIC
Source: Genetic information comes from the article