Information report for ZmMCM4
Gene Details
|
|
Functional Descriptions
- Identified the DNA replication licensing factor gene mcm4 (Zm00001d009374) as a candidate gene associated with flowering time whose gene region and eQTL were nearby XP-CLR peaks.
- The ZmMCM4 gene is also stably expressed in maize flowering tissues.
- We identified mcm4 (Minichromosome maintenance protein 4) (Zm00001d009374) as another candidate gene for flowering time.
- In Arabidopsis, mutations in BICELLULAR POLLEN1 (BICE1) lead to defective gametogenesis and it was shown to play a role in modulating DNA replication by interacting with MCM4.
- Highly expression in flowering tissues such as pollinated internode, silks and female spikelet
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC100383139
- UniProt accessions: C0PDH6
- EMBL: BT066345 , CM000784
- EnsemblPlants: Zm00001eb342080_T001
- Gramene: Zm00001eb342080_T001
- KEGG: zma:100383139
- OMA: QADWDND
- ExpressionAtlas: Zm00001eb342080
- InterPro: IPR001208 , IPR003593 , IPR008047 , IPR012340 , IPR018525 , IPR027417 , IPR027925 , IPR031327 , IPR033762 , IPR036388 , IPR041562
- PANTHER: PTHR11630 , PTHR11630:SF66
- SUPFAM: SSF50249 , SSF52540
- PROSITE: PS00847 , PS50051
- Gene3D: 1.10.10.10 , 2.20.28.10 , 2.40.50.140 , 3.30.1640.10 , 3.40.50.300
- OrthoDB: C0PDH6
- SMR: C0PDH6
- CDD: cd17755
Sequences
cDNA Sequence
- >Zm00001eb342080_T001
CCCGCTATTGTCCACATCCAACCTCCGCCGCCTCCGCCTCCGCTTCCCGCCATTTTACCCTCCTCCCACTTCCCCATCTCCCATCACCTCATTCCCTGTCTGCCATCCCGAGCGATTGTCTCTGTGACTAGGCCATGGCTTCTAACAGCGGCGGCAACTCCCCACCCTCCGTACCGTCGTCGGATGGTCGACCGTCGAGCCCGCTCCCGGTCACCCACTCCTCCCCATCTCAGCCCACCCGCCGCTCCGGTGGGCGCCGCCGCCGCGGCTCCGCCAGCCCTTATGCTTCGTCCCCATCCCTCTGGGGGTTCGAGACGCCGCCACACCCTGGCCGCCGCACGCCGTCTGGTGCCGGGGCTGGCGCCGCCCGGCAGCAGCGTCAGAATTTGTCTGGCCGGTTCCCGCCGACGCCCTCCACCCCAATGTCTACAGATGACGTCCCGCCGTCCTCCGAAGCCGGGGACGACGAGACAGATGGCGGCGACGGCGGGGTCGACGCCACCCCGGTCTTCGTCTGGGGCACCAACATCAGCGTGCAGGACGTCAATGCCGCCATCCTCCGGTTCCTGCGCCACTTCCGGGACCCGCGTGACGCCGGCCGCGTCGACCCGGTCATGGACGAGGGCAAGTACATGCGCTCCATCCACCGCATCTTGGAGCTCGAGGGCGGGGAGTCACTCGACGTCGACGCGCACGACGTGTTTGACCATGACTCAGACCTCTACAGCAAGATGGTCCGCTACCCGCTTGAGGTGCTAGCCATCTTCGACATTGTGCTCATGGACCTCGTCGCGCGCATCGAGCCGCTCTTCGAGAAGCACATCCAGACCAGGGTCTACAACCTCAAGTCGTCCATTTGCTTGAGGAATCTCAACCCATCTGATATTGAGAAGATGGTATCCATCAAGGGTATGATAATTAGATGCAGCTCAGTCATTCCGGAGCTCAAGGAGGCTGTTTTCCGCTGCTTGGTTTGTGGTTTCTACTCAGAGCCCGTCATGGTTGATAGAGGGAGAGTAACTGAGCCACACATCTGTCAGAAAGAGCAATGTAAAGCCACAAATTCTATGACCCTAGTGCACAACCGATGCAGATTTTCAGACAAGCAGATCATAAAGTTGCAGGAAACACCAGATGAGATACCTGAAGGTGGCACTCCACATACAGTTAGTGTCTTGATGCATGATAAGCTTGTTGATGCTGGAAAGCCTGGAGATAGAGTTGTGATAACTGGTATATACAGGGCTATGAGTATTAGAGTTGGACCAACTCAAAGGACTGTGAAGTCTATATTCAAGACATATATCGATTGCCTTCACATAAAGAAGACAGACAAGTCTAGGCTTCATGTGGAGGATACCAAGGATATTGATAATTCTAATGCTAGCAAATGTACTGAAGAGGATTTTCTTAGTGATAAGGTTGAGAAACTAAAAGAGCTTTCAAAGTTGCCTGATATCTATGACAGATTGACTAGATCATTAGCTCCAAACATATGGGAGTTGGATGATGTTAAAAGAGGCCTCCTTTGCCAGCTTTTTGGCGGCAATCCCTTAAAGCTTCCTTCTGGAGCTAGCTTCCGGGGTGACATCAATATTTTACTTGTGGGTGATCCTGGAACGAGTAAATCCCAGCTTCTCCAGTACATGCATAAACTGTCTCCTCGTGGTATCTACACAAGTGGCAGAGGAAGTTCTGCTGTTGGTCTTACTGCATATGTCACCAAAGATCCTGAGACTGGTGAAACTGTTCTAGAAAGTGGAGCACTAGTTTTGAGTGACAAAGGTGTTTGTTGCATAGATGAGTTCGATAAGATGTCTGATAATGCACGAAGCATGTTACACGAGGTGATGGAACAGCAGACCGTATCCATTGCGAAGGCTGGAATAATTGCATCTTTAAATGCTAGAACATCTGTCCTGGCATGTGCCAATCCTACCGAATCACGTTACAACCCAAGGCTTTCTGTAATTGACAACATTCACTTAGCCCCAACTCTACTTTCAAGATTCGACCTAATTTATCTTATCTTGGACAAGGCGGATGAGCAAACTGATAGGCGCCTGGCAAAGCATATTGTTTCGTTGCATTTTGAGAATCCAAATTTAGAGGAGCTCGAGGTGTTGGATCTGCAGACACTAGTTTCCTACATAAGCTATGCAAGGAAGTATATTCAGCCACAGTTAACTGATGAAGCTGCAGAGGAGTTAACTCGTGGCTATGTTGAGATGAGGAAAAGAGGGAATAGCCCTGGGAGCAGAAAGAAGGTCATAACTGCAACTGCTAGACAAATAGAGAGTTTGATTCGTCTAGGTGAAGCATTAGCCCGGATGCGGTTCTCTGAAGTGGTCGAGGTGCGAGATGTTGTGGAGGCCTTCAGGCTTCTTGAAGTTGCCATGCAGCAGTCTGCAACGGATCATGCAACTGGGACGATTGATATGGATCTAATCATGACGGGGATATCTGCAAGTGAAAGGCAGAGACGGAACGACCTTGTTGCTGCAACCCGTAACCTTATCGTGGAGAAAATGCAGCTCGGAGGGCCTTCAATGCATATGATTGAGTTGCTGGAAGAACTCAGGAAGCAGAGCTCAATGGAAATCCATCTGCACGAACTCCGCGGTGCTCTTGGCACTCTGATGACTGAAGGTGCGGTTGTTATCCATGGAGAAAACGTGAAGAGAGTTTGATGTTAACTGCCATCTGCGGTGATGCTTCTGTAAGCTCAGTCTGCCGTTTCCTTCAACAGTCAAGGTTGCGAAGATCTGAACAACTGTAGGGTTTTAGCTGCCAGAGTGCTAACTAATGTGGTCTGAGATTTGTTCCAGATTGTGTAACTCCCTAACAGCGGTGTTGCTAGCTGTAGATTTTTTTAATGAAATATCAAAAAATTAGTTCACGAATTGTAAATGGTAATTATGATTGGAATTAAAAAAATTATTTAACATTATGTGTTACCCATCACGTGAATCAAATAGCACCTTATATTC
CDS Sequence
- >Zm00001eb342080_T001
ATGGCTTCTAACAGCGGCGGCAACTCCCCACCCTCCGTACCGTCGTCGGATGGTCGACCGTCGAGCCCGCTCCCGGTCACCCACTCCTCCCCATCTCAGCCCACCCGCCGCTCCGGTGGGCGCCGCCGCCGCGGCTCCGCCAGCCCTTATGCTTCGTCCCCATCCCTCTGGGGGTTCGAGACGCCGCCACACCCTGGCCGCCGCACGCCGTCTGGTGCCGGGGCTGGCGCCGCCCGGCAGCAGCGTCAGAATTTGTCTGGCCGGTTCCCGCCGACGCCCTCCACCCCAATGTCTACAGATGACGTCCCGCCGTCCTCCGAAGCCGGGGACGACGAGACAGATGGCGGCGACGGCGGGGTCGACGCCACCCCGGTCTTCGTCTGGGGCACCAACATCAGCGTGCAGGACGTCAATGCCGCCATCCTCCGGTTCCTGCGCCACTTCCGGGACCCGCGTGACGCCGGCCGCGTCGACCCGGTCATGGACGAGGGCAAGTACATGCGCTCCATCCACCGCATCTTGGAGCTCGAGGGCGGGGAGTCACTCGACGTCGACGCGCACGACGTGTTTGACCATGACTCAGACCTCTACAGCAAGATGGTCCGCTACCCGCTTGAGGTGCTAGCCATCTTCGACATTGTGCTCATGGACCTCGTCGCGCGCATCGAGCCGCTCTTCGAGAAGCACATCCAGACCAGGGTCTACAACCTCAAGTCGTCCATTTGCTTGAGGAATCTCAACCCATCTGATATTGAGAAGATGGTATCCATCAAGGGTATGATAATTAGATGCAGCTCAGTCATTCCGGAGCTCAAGGAGGCTGTTTTCCGCTGCTTGGTTTGTGGTTTCTACTCAGAGCCCGTCATGGTTGATAGAGGGAGAGTAACTGAGCCACACATCTGTCAGAAAGAGCAATGTAAAGCCACAAATTCTATGACCCTAGTGCACAACCGATGCAGATTTTCAGACAAGCAGATCATAAAGTTGCAGGAAACACCAGATGAGATACCTGAAGGTGGCACTCCACATACAGTTAGTGTCTTGATGCATGATAAGCTTGTTGATGCTGGAAAGCCTGGAGATAGAGTTGTGATAACTGGTATATACAGGGCTATGAGTATTAGAGTTGGACCAACTCAAAGGACTGTGAAGTCTATATTCAAGACATATATCGATTGCCTTCACATAAAGAAGACAGACAAGTCTAGGCTTCATGTGGAGGATACCAAGGATATTGATAATTCTAATGCTAGCAAATGTACTGAAGAGGATTTTCTTAGTGATAAGGTTGAGAAACTAAAAGAGCTTTCAAAGTTGCCTGATATCTATGACAGATTGACTAGATCATTAGCTCCAAACATATGGGAGTTGGATGATGTTAAAAGAGGCCTCCTTTGCCAGCTTTTTGGCGGCAATCCCTTAAAGCTTCCTTCTGGAGCTAGCTTCCGGGGTGACATCAATATTTTACTTGTGGGTGATCCTGGAACGAGTAAATCCCAGCTTCTCCAGTACATGCATAAACTGTCTCCTCGTGGTATCTACACAAGTGGCAGAGGAAGTTCTGCTGTTGGTCTTACTGCATATGTCACCAAAGATCCTGAGACTGGTGAAACTGTTCTAGAAAGTGGAGCACTAGTTTTGAGTGACAAAGGTGTTTGTTGCATAGATGAGTTCGATAAGATGTCTGATAATGCACGAAGCATGTTACACGAGGTGATGGAACAGCAGACCGTATCCATTGCGAAGGCTGGAATAATTGCATCTTTAAATGCTAGAACATCTGTCCTGGCATGTGCCAATCCTACCGAATCACGTTACAACCCAAGGCTTTCTGTAATTGACAACATTCACTTAGCCCCAACTCTACTTTCAAGATTCGACCTAATTTATCTTATCTTGGACAAGGCGGATGAGCAAACTGATAGGCGCCTGGCAAAGCATATTGTTTCGTTGCATTTTGAGAATCCAAATTTAGAGGAGCTCGAGGTGTTGGATCTGCAGACACTAGTTTCCTACATAAGCTATGCAAGGAAGTATATTCAGCCACAGTTAACTGATGAAGCTGCAGAGGAGTTAACTCGTGGCTATGTTGAGATGAGGAAAAGAGGGAATAGCCCTGGGAGCAGAAAGAAGGTCATAACTGCAACTGCTAGACAAATAGAGAGTTTGATTCGTCTAGGTGAAGCATTAGCCCGGATGCGGTTCTCTGAAGTGGTCGAGGTGCGAGATGTTGTGGAGGCCTTCAGGCTTCTTGAAGTTGCCATGCAGCAGTCTGCAACGGATCATGCAACTGGGACGATTGATATGGATCTAATCATGACGGGGATATCTGCAAGTGAAAGGCAGAGACGGAACGACCTTGTTGCTGCAACCCGTAACCTTATCGTGGAGAAAATGCAGCTCGGAGGGCCTTCAATGCATATGATTGAGTTGCTGGAAGAACTCAGGAAGCAGAGCTCAATGGAAATCCATCTGCACGAACTCCGCGGTGCTCTTGGCACTCTGATGACTGAAGGTGCGGTTGTTATCCATGGAGAAAACGTGAAGAGAGTTTGA
Protein Sequence
- >Zm00001eb342080_P001
MASNSGGNSPPSVPSSDGRPSSPLPVTHSSPSQPTRRSGGRRRRGSASPYASSPSLWGFETPPHPGRRTPSGAGAGAARQQRQNLSGRFPPTPSTPMSTDDVPPSSEAGDDETDGGDGGVDATPVFVWGTNISVQDVNAAILRFLRHFRDPRDAGRVDPVMDEGKYMRSIHRILELEGGESLDVDAHDVFDHDSDLYSKMVRYPLEVLAIFDIVLMDLVARIEPLFEKHIQTRVYNLKSSICLRNLNPSDIEKMVSIKGMIIRCSSVIPELKEAVFRCLVCGFYSEPVMVDRGRVTEPHICQKEQCKATNSMTLVHNRCRFSDKQIIKLQETPDEIPEGGTPHTVSVLMHDKLVDAGKPGDRVVITGIYRAMSIRVGPTQRTVKSIFKTYIDCLHIKKTDKSRLHVEDTKDIDNSNASKCTEEDFLSDKVEKLKELSKLPDIYDRLTRSLAPNIWELDDVKRGLLCQLFGGNPLKLPSGASFRGDINILLVGDPGTSKSQLLQYMHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDKGVCCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPTESRYNPRLSVIDNIHLAPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPNLEELEVLDLQTLVSYISYARKYIQPQLTDEAAEELTRGYVEMRKRGNSPGSRKKVITATARQIESLIRLGEALARMRFSEVVEVRDVVEAFRLLEVAMQQSATDHATGTIDMDLIMTGISASERQRRNDLVAATRNLIVEKMQLGGPSMHMIELLEELRKQSSMEIHLHELRGALGTLMTEGAVVIHGENVKRV