Information report for ZmMADS60
Gene Details
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Functional Descriptions
- ZmMADS60 be involved in the elongation of primary and lateral roots in the seedling stage and that significant variants can be used to develop functional markers to improve root length in maize.
- ZmMADS60 in maize retained only 40.1% and 66.9% of the nucleotide diversity found in teosinte and landrace, respectively. Gene-based association analysis of inbred lines identified nine variants that were significantly associated with primary root length (PRL), lateral root length (LRL), root length between 0 mm and 0.5 mm in diameter (RL005) and total root length (TRL)
- Natural variations in ZmMADS60 were significantly associated with total root length (TRL) and lateral root length (LRL).
- ZmMADS60 was associated with primary root length (PRL), lateral root length (LRL), root length between 0 and 0.5 mm in diameter (RL005) and total root length (TRL), which indicated that this gene might be involved in elongation of the primary and lateral root in the seedling stage.
Functional Keywords
Literature and News
Homologs
- Musa acuminata: GSMUA_Achr3P04450_001
- Oryza sativa: OsMADS63
- Panicum virgatum: Pavir.4KG215200.1.p, Pavir.4NG076800.1.p
- Setaria italica: Seita.4G093200.1.p
- Setaria viridis: Sevir.4G092900.1.p
Sequences
cDNA Sequence
- >Zm00001eb372610_T002
ATCCCCGACGACCCTAGCCTCCTCCCTAGCTCAGGCCTCATCCTCTTCGTCTGATACTAGTAATCTATAGAGAGTGATTCTCAGCATCATATCGTCAGCCATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAGCTAGCTGCATCTGCTTGTCCGCAGACTGTTTTGCAGCATCACTTCTTTACCCAGCATAGCAGTTGGAAAGCCTACAGCTAGCCAACTAGCTAGACAGCCAAGGATGGATTATACCTCTTCCTCTAAAAGAATTAATGCTTCAAATTCTCCTTATTTAAAAATCAAACGCCAAAACATAAGATATCAGTAGTATAAGGGAGGGTCAACAAGTTTTCATGATA - >Zm00001eb372610_T001
ATCCCCGACGACCCTAGCCTCCTCCCTAGCTCAGGCCTCATCCTCTTCGTCTGATACTAGTAATCTATAGAGAGTGATTCTCAGCATCATATCGTCAGCCATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAGCTAGCTGCATCTGCTTGTCCGCAGACTGTTTTGCAGCATCACTTCTTTACCCAGCATAGCAGTTGGAAAGCCTACAGCTAGCCAACTAGCTAGACAGCCAAGGATGGATTATACCTCTTCCTCTAAAAGAATTAATGCTTCAAATTCTCCTTATTTAAAAATCAAACGCCAAAACATAAGATATCAGTAGTATAAGGGAGGGTCAACAAGTTTTCATGATA - >Zm00001eb372610_T003
ATCCCCGACGACCCTAGCCTCCTCCCTAGCTCAGGCCTCATCCTCTTCGTCTGATACTAGTAATCTATAGAGAGTGATTCTCAGCATCATATCGTCAGCCATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAGCTAGCTGCATCTGCTTGTCCGCAGACTGTTTTGCAGCATCACTTCTTTACCCAGCATAGCAGTTGGAAAGCCTACAGCTAGCCAACTAGCTAGACAGCCAAGGATGGATTATACCTCTTCCTCTAAAAGAATTAATGCTTCAAATTCTCCTTATTTAAAAATCAAACGCCAAAACATAAGATATCAGTAGTATAAGGGAGGGTCAACAAGTTTTCATGATA
CDS Sequence
- >Zm00001eb372610_T002
ATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAG - >Zm00001eb372610_T001
ATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAG - >Zm00001eb372610_T003
ATGGGCCGCGTGAAGCTGCAGATCAAGAGGATCGAGAACAACACCAACCGGCAGGTGACCTTCTCCAAGCGCCGCAATGGCCTCATCAAGAAGGCCTACGAGCTCTCCGTCCTGTGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGGATCGAGGACGTGATCACTAGATACATCAATCTCCCGGAGCACGAGAGAGGAGGAGGAGGAGGAGGAGTCGTTCGGAATAGAGAGTATCTGATGAACATGCTTACGCAACTCAAACGCGAGGGTGACATTGCCGAACAGCTCACACCACCCAATAAAGGTCCAGCGAACTCCAACATAGAGGATCTTCAGCACGAGATTAGAAATTACAGACATCAGGTCGAAGAGTTGGAGAAGCAAATTAGGATGTTCGAGCCAGATCCGGCGGTGTTGGTGTTGACGAATGAAGCCGAGACGTGCGAGAAATTCCTCATGGACACACTCACCCGTGTCGAGGAGCGTATGAAATATCTGTCGTGCAACCAGCTGGGCCCGTTCGAACCGTCACCCACCGACATACACGACGTATTCGGTGTGTCGCAGCAGCAGCAGCAGCAGGGGGACCTGAGCGCATTCGGGGCCGGCGACGTAGTATCGTATTTCGCTGGCGGAATGGCGGCGTCGGACATCTTCTCCGGTGTTGGCCCGATGTCGTCTTTCAGCGAGCAGACGATTTTCGACTCGATGCGGCCGGACCCGGCCGTCATGGCTGGACTGGACCCGGGAATAGCCACGATCTGCACCGTCGACCAGCAGCCTCCCAGTCTCAACTGGGAGGACGCGTACGCGTCTGCGGGGCTCCTCTCCGCGCTCATTCCGTCCACGCCCTTCCCCCTCGATGAAGACCAGCAGATACAGGACGCCATGGCGCCGGTGCTCACGTCTCCGATGGTGCCGCCGCCGCCGCATCACGTGCACGAGGAAGTGGAGGCGCCGGAAAGCTGCTCCAACGTGTCGACGGACGGGGACCGCGCCGCTACAACCGCCCCCGCCGCCGTCGGTCAAGAGCACGGGCTGCCCAGTGCGGTCGTCGACTAG
Protein Sequence
- >Zm00001eb372610_P002
MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGRRRIEDVITRYINLPEHERGGGGGGVVRNREYLMNMLTQLKREGDIAEQLTPPNKGPANSNIEDLQHEIRNYRHQVEELEKQIRMFEPDPAVLVLTNEAETCEKFLMDTLTRVEERMKYLSCNQLGPFEPSPTDIHDVFGVSQQQQQQGDLSAFGAGDVVSYFAGGMAASDIFSGVGPMSSFSEQTIFDSMRPDPAVMAGLDPGIATICTVDQQPPSLNWEDAYASAGLLSALIPSTPFPLDEDQQIQDAMAPVLTSPMVPPPPHHVHEEVEAPESCSNVSTDGDRAATTAPAAVGQEHGLPSAVVD - >Zm00001eb372610_P001
MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGRRRIEDVITRYINLPEHERGGGGGGVVRNREYLMNMLTQLKREGDIAEQLTPPNKGPANSNIEDLQHEIRNYRHQVEELEKQIRMFEPDPAVLVLTNEAETCEKFLMDTLTRVEERMKYLSCNQLGPFEPSPTDIHDVFGVSQQQQQQGDLSAFGAGDVVSYFAGGMAASDIFSGVGPMSSFSEQTIFDSMRPDPAVMAGLDPGIATICTVDQQPPSLNWEDAYASAGLLSALIPSTPFPLDEDQQIQDAMAPVLTSPMVPPPPHHVHEEVEAPESCSNVSTDGDRAATTAPAAVGQEHGLPSAVVD - >Zm00001eb372610_P003
MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGRRRIEDVITRYINLPEHERGGGGGGVVRNREYLMNMLTQLKREGDIAEQLTPPNKGPANSNIEDLQHEIRNYRHQVEELEKQIRMFEPDPAVLVLTNEAETCEKFLMDTLTRVEERMKYLSCNQLGPFEPSPTDIHDVFGVSQQQQQQGDLSAFGAGDVVSYFAGGMAASDIFSGVGPMSSFSEQTIFDSMRPDPAVMAGLDPGIATICTVDQQPPSLNWEDAYASAGLLSALIPSTPFPLDEDQQIQDAMAPVLTSPMVPPPPHHVHEEVEAPESCSNVSTDGDRAATTAPAAVGQEHGLPSAVVD