Information report for ZmINCW1
Gene Details
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Functional Descriptions
- ZmINCW1 is close to QTL peaks for kernel size/weight and contains significant single-nucleotide polymorphisms affecting kernel size/weight in the association panel.
- Overexpression of this gene can rescue the reduced weight of the Arabidopsis (Arabidopsis thaliana) homozygous mutant line in the AtcwINV2 gene (Arabidopsis ortholog of ZmINCW1).
- The function of ZmINCW1, a homolog of rice GRAIN INCOMPLETE FILLING1 that affects seed size and weight, was characterized in detail.
- ZmINCW1, an ortholog of the rice seed weight gene GRAIN INCOMPLETE FILLING1 (GIF1), had a conserved function that affects kernel/seed development in maize and Arabidopsis.
- ZmINCW1, Whose Protein Sequence Has High Similarity to Rice GIF1, Affects Kernel Development in Maize.
- Overexpression of Maize ZmINCW1 in Arabidopsis Can Increase Seed Weight
Functional Keywords
- development , grain , grain-size , seed , grain-weight , seed-weight , seed-size , seed-development , grain-protein
Literature and News
- The Conserved and Unique Genetic Architecture of Kernel Size and Weight in Maize and Rice. DOI: 10.1104/pp.17.00708 ; PMID: 28811335
- Auxin and abscisic acid play important roles in promoting glucose metabolism of reactivated young kernels of maize (Zea mays L.). DOI: 10.1111/ppl.14019 ; PMID: 37882255
Gene Resources
- NCBI ID: 542314
- UniProt accessions: P49174
- EMBL: U17695
- AlphaFoldDB: P49174
- KEGG: zma:542314
- InterPro: IPR001362 , IPR013148 , IPR013189 , IPR013320 , IPR018053 , IPR023296 , IPR050551
- PANTHER: PTHR31953
- SUPFAM: SSF49899 , SSF75005
- PROSITE: PS00609
- Gene3D: 2.115.10.20 , 2.60.120.560
- OrthoDB: P49174
- SMR: P49174
- CDD: cd18624
Sequences
cDNA Sequence
- >Zm00001eb242820_T001
TGCTTTCTGACCTCTGAAATCTTGGAAGGATTATGTGTCTACACTTCTCGATCGAGGGGAAAAAGTCGTAGTACCAAGTTGTAGTTAAATTTGTTTCTTCGATGACAAAACAAAGGAGAGGGGCCCGCGCGGCGCAGCGCAGCGCAGTTGGCTGGTTCCGGAACACGAAAACCAAGCACACTCCACCAGCTGCCATCCACCGGGTTGGATGGAGATTACAATACTCGAATAGTCAGCCAGCCAGCCGGCTTGAACGTGCAGTTTTCCCCTATAAAACGGCCCCGACCCGGCCGATGCCCCGTCCATCCAATCCAATCCAAACCGTCCCTTGTCCCTCTCTTCCTCGAAACGCAGCTATGGGGACTCGGCCGCGGGGGGTCGTCCTCGCGCCATGGGCGGTGGTGCTGGTGCTGGTGCTCGCGCTTCGTCTGGCAGGCGCGTCGCATGTGATCCACCGCAGCCTGGAGGCCGAGGCGGCGCCGTCGGTCCCGGCCTCCATTGTCAGCCCCCTGCTCAGGACGGGGTACCATTTCCAGCCGCCAATGAACTGGATCAACGACCCCAACGCTCCGCTGTACTACAAAGGATGGTATCACCTGTTCTACCAGTACAACCCCAAGGGCGCGGTATGGGGCAACATCGTGTGGGCGCACTCGGTGTCGCGCGACCTGATCAACTGGGTGGCGCTGGAGCCCGCCATCTACCCCAGCATCCCGTCCGACAAGTACGGCTGCTGGTCGGGCTCGGCGACGATCCTGGAGGACGGCACGCCGGCGATCCTGTACACGGGGATCGACCGGGCGGACATCAACTACCAGGTGCAGGTGCTGGCGCTCCCCAAGGACGCGTCCGACCCGCTGCTCCGCGAGTGGGAGAAGCCGGAGGAGTACAACCCGGTGGCGACGCCGGCGGCCGGCGGCATCAACGCGACGCAGTTCCGCGACCCGACGACGGCGTGGCGGCACGCGGGGCACTGGCGGATGCTGGTGGGCAGCGTGCGCGGCGCGCGCGGGATGGCGCTGGTGTACCGGAGCCGGGACTTCAGGAAGTGGACCAAGGCCAAGCACCCGCTGCACTCGGCGGCGCTGACGGGGATGTGGGAGTGCCCCGACTTCTTCCCGGTGTCCGGGCCGGGGCTGCAGGCCGGCCTCGACACCTCCGCGCCCGGAAGGAAGTACGTGCTCAAGAGCAGCCTGGACCTCACCCGCTACGACTACTACACCATCGGGTCGTACGACGGCGGCAAGGACCGGTACTACCCCGACGACCCCGCCGGCGACTACCACCACCGCCTGCGCTACGACTACGGCAACTACTACGCGTCCAAGACGTTCTACGACCCCGTGGAGCGCCGCCGCGTGCTGCTCGGGTGGGCCAACGAGTCCGACAGCGTCACCGACGACAAGGCCAAGGGCTGGGCCGGCATCCATGCGATCCCAAGGAAGATCTGGCTGGACCCCACCGGGAAGCAGCTGCTGCAGTGGCCCATCCACGAGGTCGAGAAGCTCAGGGGGAAGGCCGTCAGTGTGGACGCCAAGCTGGTCAAGCCCGGCGACCATTTTGAGGTCACAGGCATCGCAACTTATCAGGCTGACGTGGAGGTGAGCTTCGAGCTGGAGCTGGAGGCGGGGACGAGCCTGCTGGAGAAGGCGGAGGCGTTCGACCCGGCGTACGACGACGACGCGCAGAAGCTGTGCGGAGTCAAGGGCGCGGACGCCAGGGGCGGCGTGGGGCCATTCGGCCTCTGGGTGCTGGCCTCCGCCGACCTGCAGGAGCGGACGGCCGTCTTCTTCAGGGTGTTCAGGGACGGACACGGCAAGCCCAAGGTGCTCATGTGCACCGACCCCACCAAGTCGTCTCTTAGTCCGGATCTGTACAAGCCGACCTTCGCGGGCTTCGTCGACGCCGACATCTCCAGCGGCAAGATCACCCTTAGAAGCTTGATCGATCGGTCCGTGGTCGAGAGCTTCGGCGCGGGAGGCAAGACGTGCATCCTGTCACGGGTGTACCCGTCCATCGCCGTCGGGAAGGACGCTCACCTCTACGTTTTCAACAACGGCGAGGTGGACGTCACGGTGTCCGGCCTGACCGCCTGGGAGATGAAGAAACCGCTGATGAACGGCGCCTGAAATTGAAGGGAAAAAACAAAAGTCTATCCGGCCGCCACGTGACTTTCTTTATTTTCGTTCTTCTTCTTCTTCGTCAACACACGTCTCTGCCGCCAAAGGAGAAATTGATTGATTTCAACGTACGTATGTGTACGTCTGCTGCCGATCGAAAGAGAATTGGATTATTATAAAATTGTTTGAGGCCGGTCCTTCCATTTTCTCGTCCTTAATTCCTCTGGCATGCAGGATCAGTGACCGACGACTTGTAGTTTGCTTGAGCATGTTGTTTACGCTGCTAGCTTCTTGTTGTACGATACACATATACAACAATATGACACGATGAATAAAAAAAGTGCTGCTAATTAATTTTACAGTGTGTCCACAAGCAACGAGAGCTAGCGCTGCCTTTACGTACTAGCTCTCCTTTCGTTTTGAACTATATATAAAACGTTTTAGCTTTTTTTAGATATGATGTTTTTTTACTTATAGTGTATGTTTTAGTTATGTAGAAAAAATGTATCTGGAAACAGATGGAGTATTCATTTTTCTGCACAAAATGTCGCTATATATATAGGGGCATGAAAAAAAATTAAGAAGAGACGGAAGCGTCGATCTCTGTGCTAGTGACGCAAATGATGGACACCACCAGAAGCTTTGCCACGAAATCATGTGAG
CDS Sequence
- >Zm00001eb242820_T001
ATGGGGACTCGGCCGCGGGGGGTCGTCCTCGCGCCATGGGCGGTGGTGCTGGTGCTGGTGCTCGCGCTTCGTCTGGCAGGCGCGTCGCATGTGATCCACCGCAGCCTGGAGGCCGAGGCGGCGCCGTCGGTCCCGGCCTCCATTGTCAGCCCCCTGCTCAGGACGGGGTACCATTTCCAGCCGCCAATGAACTGGATCAACGACCCCAACGCTCCGCTGTACTACAAAGGATGGTATCACCTGTTCTACCAGTACAACCCCAAGGGCGCGGTATGGGGCAACATCGTGTGGGCGCACTCGGTGTCGCGCGACCTGATCAACTGGGTGGCGCTGGAGCCCGCCATCTACCCCAGCATCCCGTCCGACAAGTACGGCTGCTGGTCGGGCTCGGCGACGATCCTGGAGGACGGCACGCCGGCGATCCTGTACACGGGGATCGACCGGGCGGACATCAACTACCAGGTGCAGGTGCTGGCGCTCCCCAAGGACGCGTCCGACCCGCTGCTCCGCGAGTGGGAGAAGCCGGAGGAGTACAACCCGGTGGCGACGCCGGCGGCCGGCGGCATCAACGCGACGCAGTTCCGCGACCCGACGACGGCGTGGCGGCACGCGGGGCACTGGCGGATGCTGGTGGGCAGCGTGCGCGGCGCGCGCGGGATGGCGCTGGTGTACCGGAGCCGGGACTTCAGGAAGTGGACCAAGGCCAAGCACCCGCTGCACTCGGCGGCGCTGACGGGGATGTGGGAGTGCCCCGACTTCTTCCCGGTGTCCGGGCCGGGGCTGCAGGCCGGCCTCGACACCTCCGCGCCCGGAAGGAAGTACGTGCTCAAGAGCAGCCTGGACCTCACCCGCTACGACTACTACACCATCGGGTCGTACGACGGCGGCAAGGACCGGTACTACCCCGACGACCCCGCCGGCGACTACCACCACCGCCTGCGCTACGACTACGGCAACTACTACGCGTCCAAGACGTTCTACGACCCCGTGGAGCGCCGCCGCGTGCTGCTCGGGTGGGCCAACGAGTCCGACAGCGTCACCGACGACAAGGCCAAGGGCTGGGCCGGCATCCATGCGATCCCAAGGAAGATCTGGCTGGACCCCACCGGGAAGCAGCTGCTGCAGTGGCCCATCCACGAGGTCGAGAAGCTCAGGGGGAAGGCCGTCAGTGTGGACGCCAAGCTGGTCAAGCCCGGCGACCATTTTGAGGTCACAGGCATCGCAACTTATCAGGCTGACGTGGAGGTGAGCTTCGAGCTGGAGCTGGAGGCGGGGACGAGCCTGCTGGAGAAGGCGGAGGCGTTCGACCCGGCGTACGACGACGACGCGCAGAAGCTGTGCGGAGTCAAGGGCGCGGACGCCAGGGGCGGCGTGGGGCCATTCGGCCTCTGGGTGCTGGCCTCCGCCGACCTGCAGGAGCGGACGGCCGTCTTCTTCAGGGTGTTCAGGGACGGACACGGCAAGCCCAAGGTGCTCATGTGCACCGACCCCACCAAGTCGTCTCTTAGTCCGGATCTGTACAAGCCGACCTTCGCGGGCTTCGTCGACGCCGACATCTCCAGCGGCAAGATCACCCTTAGAAGCTTGATCGATCGGTCCGTGGTCGAGAGCTTCGGCGCGGGAGGCAAGACGTGCATCCTGTCACGGGTGTACCCGTCCATCGCCGTCGGGAAGGACGCTCACCTCTACGTTTTCAACAACGGCGAGGTGGACGTCACGGTGTCCGGCCTGACCGCCTGGGAGATGAAGAAACCGCTGATGAACGGCGCCTGA
Protein Sequence
- >Zm00001eb242820_P001
MGTRPRGVVLAPWAVVLVLVLALRLAGASHVIHRSLEAEAAPSVPASIVSPLLRTGYHFQPPMNWINDPNAPLYYKGWYHLFYQYNPKGAVWGNIVWAHSVSRDLINWVALEPAIYPSIPSDKYGCWSGSATILEDGTPAILYTGIDRADINYQVQVLALPKDASDPLLREWEKPEEYNPVATPAAGGINATQFRDPTTAWRHAGHWRMLVGSVRGARGMALVYRSRDFRKWTKAKHPLHSAALTGMWECPDFFPVSGPGLQAGLDTSAPGRKYVLKSSLDLTRYDYYTIGSYDGGKDRYYPDDPAGDYHHRLRYDYGNYYASKTFYDPVERRRVLLGWANESDSVTDDKAKGWAGIHAIPRKIWLDPTGKQLLQWPIHEVEKLRGKAVSVDAKLVKPGDHFEVTGIATYQADVEVSFELELEAGTSLLEKAEAFDPAYDDDAQKLCGVKGADARGGVGPFGLWVLASADLQERTAVFFRVFRDGHGKPKVLMCTDPTKSSLSPDLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMNGA