Gene Details:
- Gene ID: Zm00001eb130310
- Gene Symbol: ZmHKT1 nc1
- Gene Name: Na+ content1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- ZmHKT1 was an important contributor to the phenotypic variations of seedling root traits in maize, these significant variants could use to develop functional markers to improve root traits.
- We found that the maize salt tolerance gene ZmHKT1 may be involved in root development.
- The gene displayed high level of nucleotide diversity, especially in non-genic regions. A total of 19 variations in untranslated region of ZmHKT1 were found to be associated with six seedling traits.
- The genomic sequences of a salt tolerance gene ZmHKT1 was resequenced in 349 maize inbred lines, and the association between nucleotide polymorphisms and seedling root traits was detected.
- In maize, ZmHKT1 has been associated with salt tolerance, but no studies have shown it to be associated with root development.
- ZmHKT1 is required for Na+ homeostasis and salt tolerance in maize.
Function-related keywords:
- root , development , seedling , salt , tolerance , root-development , salt-tolerance , homeostasis
Literature:
- Natural variation of ZmHKT1 affects root morphology in maize at the seedling stage. DOI: 10.1007/s00425-018-3043-2 ; PMID: 30460404
Related News:
Gene Resources:
- NCBI ID: LOC100382359
- UniProt accessions: C0P6W4
Sequences:
cDNA Sequence
- >Zm00001eb130310_T002
CACCTGGTGCTGTTCCATGTGCACCCGTTCTGGATCCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGTTTCTTGATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGAACCGAAGTACTATTTCGAAACTCGCTCGATCAACCTGATCTCCAGGACTCCAAGACTAGTACTTGAATTCTCAGTCTATTCAGACGGAACCGGATCATATGACAAATCCATCTGCGAGGAGTTTGGCTGCATTCTGTAAAGTCGGTAGGGGCAAGGGGTTGTTCATATCCTTTTTATTTAAAAATAAAAAATAGTTTTAT - >Zm00001eb130310_T001
CACCTGGTGCTGTTCCATGTGCACCCGTTCTGGATCCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGTTTCTTGATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGAACCGAAGTACTATTTCGAAACTCGCTCGATCAACCTGATCTCCAGGACTCCAAGACTAGTACTTGAATTCTCAGTCTATTCAGACGGAACCGGATCATATGACAAATCCATCTGCGAGGAGTTTGGCTGCATTCTGTAAAGTCGGTAGGGGCAAGGGGTTGTTCATATCCTTTTTATTTAAAAATAAAAAATAGTTTTAT
CDS Sequence
- >Zm00001eb130310_T002
ATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGA - >Zm00001eb130310_T001
ATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGA
Protein Sequence
- >Zm00001eb130310_P002
MLRVLPMKSSSVPRPSALDLLFTSVSATTVSSMIAVEMESFSNAQLLLMTLLMLLGGEVFTSMLGLHFTCTKLRNKRETPHNNLHGNSLEQSRRRHRPMEMEAQAAAVQMELAGFNKDGHGDFASMASVVGSARAVLVRKRISLSTFSVFTVVSSFANCGFVPTNEGMVSFKSFPGMLLLVMPHILLGNTLFPIFLRLSITALERVTRWRDLCELLRDRGPGGGPAAAAAAAAIGYDHLLPGPRTWFLALTVAVFLAVQLVLYCAMEWGSGGLGGLNAFQKLVAAVFMSVNSRHSGEMVVDLATVSSAVVVLYVLMMYLPPYTTFLPVAVEDDQQQQNEAQPHDNSTSKSSTSISIWHNLLMSPLSCLTIFIVVICITERRQIARDPINFSVLNIVVEVISAYGNVGFSTGYSCSRQVTPGGGCCKDAWVSLSGKWSVEGKLTLMAIMFYGRLKKFSMLGGQAWRLN - >Zm00001eb130310_P001
MLRVLPMKSSSVPRPSALDLLFTSVSATTVSSMIAVEMESFSNAQLLLMTLLMLLGGEVFTSMLGLHFTCTKLRNKRETPHNNLHGNSLEQSRRRHRPMEMEAQAAAVQMELAGFNKDGHGDFASMASVVGSARAVLVRKRISLSTFSVFTVVSSFANCGFVPTNEGMVSFKSFPGMLLLVMPHILLGNTLFPIFLRLSITALERVTRWRDLCELLRDRGPGGGPAAAAAAAAIGYDHLLPGPRTWFLALTVAVFLAVQLVLYCAMEWGSGGLGGLNAFQKLVAAVFMSVNSRHSGEMVVDLATVSSAVVVLYVLMMYLPPYTTFLPVAVEDDQQQQNEAQPHDNSTSKSSTSISIWHNLLMSPLSCLTIFIVVICITERRQIARDPINFSVLNIVVEVISAYGNVGFSTGYSCSRQVTPGGGCCKDAWVSLSGKWSVEGKLTLMAIMFYGRLKKFSMLGGQAWRLN
Source: Genetic information comes from the article