Information report for ZmHKT1;nc1
Gene Details
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Functional Descriptions
- ZmHKT1 was an important contributor to the phenotypic variations of seedling root traits in maize, these significant variants could use to develop functional markers to improve root traits.
- We found that the maize salt tolerance gene ZmHKT1 may be involved in root development.
- The gene displayed high level of nucleotide diversity, especially in non-genic regions. A total of 19 variations in untranslated region of ZmHKT1 were found to be associated with six seedling traits.
- The genomic sequences of a salt tolerance gene ZmHKT1 was resequenced in 349 maize inbred lines, and the association between nucleotide polymorphisms and seedling root traits was detected.
- In maize, ZmHKT1 has been associated with salt tolerance, but no studies have shown it to be associated with root development.
- ZmHKT1 is required for Na+ homeostasis and salt tolerance in maize.
Functional Keywords
- root , development , seedling , salt , tolerance , root-development , salt-tolerance , homeostasis
Literature and News
Gene Resources
- NCBI ID: LOC100382359
- UniProt accessions: C0P6W4
- EMBL: BT064033 , HQ845286
- EnsemblPlants: Zm00001eb130310_T002
- Gramene: Zm00001eb130310_T002
- KEGG: zma:100382359
- ExpressionAtlas: Zm00001eb130310
- InterPro: IPR003445 , IPR051143
- PANTHER: PTHR31064 , PTHR31064:SF30
- OrthoDB: C0P6W4
Sequences
cDNA Sequence
- >Zm00001eb130310_T002
CACCTGGTGCTGTTCCATGTGCACCCGTTCTGGATCCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGTTTCTTGATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGAACCGAAGTACTATTTCGAAACTCGCTCGATCAACCTGATCTCCAGGACTCCAAGACTAGTACTTGAATTCTCAGTCTATTCAGACGGAACCGGATCATATGACAAATCCATCTGCGAGGAGTTTGGCTGCATTCTGTAAAGTCGGTAGGGGCAAGGGGTTGTTCATATCCTTTTTATTTAAAAATAAAAAATAGTTTTAT - >Zm00001eb130310_T001
CACCTGGTGCTGTTCCATGTGCACCCGTTCTGGATCCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGTTTCTTGATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGAACCGAAGTACTATTTCGAAACTCGCTCGATCAACCTGATCTCCAGGACTCCAAGACTAGTACTTGAATTCTCAGTCTATTCAGACGGAACCGGATCATATGACAAATCCATCTGCGAGGAGTTTGGCTGCATTCTGTAAAGTCGGTAGGGGCAAGGGGTTGTTCATATCCTTTTTATTTAAAAATAAAAAATAGTTTTAT
CDS Sequence
- >Zm00001eb130310_T002
ATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGA - >Zm00001eb130310_T001
ATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCATGGCTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGA
Protein Sequence
- >Zm00001eb130310_P002
MLRVLPMKSSSVPRPSALDLLFTSVSATTVSSMIAVEMESFSNAQLLLMTLLMLLGGEVFTSMLGLHFTCTKLRNKRETPHNNLHGNSLEQSRRRHRPMEMEAQAAAVQMELAGFNKDGHGDFASMASVVGSARAVLVRKRISLSTFSVFTVVSSFANCGFVPTNEGMVSFKSFPGMLLLVMPHILLGNTLFPIFLRLSITALERVTRWRDLCELLRDRGPGGGPAAAAAAAAIGYDHLLPGPRTWFLALTVAVFLAVQLVLYCAMEWGSGGLGGLNAFQKLVAAVFMSVNSRHSGEMVVDLATVSSAVVVLYVLMMYLPPYTTFLPVAVEDDQQQQNEAQPHDNSTSKSSTSISIWHNLLMSPLSCLTIFIVVICITERRQIARDPINFSVLNIVVEVISAYGNVGFSTGYSCSRQVTPGGGCCKDAWVSLSGKWSVEGKLTLMAIMFYGRLKKFSMLGGQAWRLN - >Zm00001eb130310_P001
MLRVLPMKSSSVPRPSALDLLFTSVSATTVSSMIAVEMESFSNAQLLLMTLLMLLGGEVFTSMLGLHFTCTKLRNKRETPHNNLHGNSLEQSRRRHRPMEMEAQAAAVQMELAGFNKDGHGDFASMASVVGSARAVLVRKRISLSTFSVFTVVSSFANCGFVPTNEGMVSFKSFPGMLLLVMPHILLGNTLFPIFLRLSITALERVTRWRDLCELLRDRGPGGGPAAAAAAAAIGYDHLLPGPRTWFLALTVAVFLAVQLVLYCAMEWGSGGLGGLNAFQKLVAAVFMSVNSRHSGEMVVDLATVSSAVVVLYVLMMYLPPYTTFLPVAVEDDQQQQNEAQPHDNSTSKSSTSISIWHNLLMSPLSCLTIFIVVICITERRQIARDPINFSVLNIVVEVISAYGNVGFSTGYSCSRQVTPGGGCCKDAWVSLSGKWSVEGKLTLMAIMFYGRLKKFSMLGGQAWRLN