Gene Details:
- Gene ID: Zm00001eb256270
- Gene Symbol: ZmCOP1 ZmCOP1a upl13
- Gene Name: ubiquitin-protein ligase13
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- We found that the mesocotyl lengths of ZmCOP1 loss-of-function mutants were shorter than those of wild-type B73 in darkness, while the mesocotyl lengths of lines with ZmCOP1 overexpression were longer than those of wild-type B104.
- ZmCOP1 functions in the elongation of etiolated seedlings in darkness and affects plant height in light. Our data can be applied in the improvement of maize plant architecture.
- ZmCOP1 regulates a wide range of KEGG pathways, such as those for MAPK hormone signal transduction, ribosome formation, RNA transport, glyoxylic acid and dicarboxylic acid metabolism and biosynthesis of secondary metabolites.
- The plant height of mutants(upl13) was shorter in both short- and long-day photoperiods.
- ZmCOP1 involved in regulating photomorphogenesis.
Function-related keywords:
- seedlings , architecture , height , plant-height , signal-transduction , plant-architecture , secondary-metabolism , as-transport
Literature:
- ZmCOP1 Regulates Maize Mesocotyl Length and Plant Height through the Phytohormone Pathways. DOI: 10.3390/life13071522 ; PMID: 37511897
Related News:
Gene Resources:
- NCBI ID: LOC100286122
- UniProt accessions: A0A1D6HLL0
Sequences:
cDNA Sequence
- >Zm00001eb256270_T001
TGAGCCTTATTTGCACAGAGATTTCACAGGCTCTCCCATCGTCGGTTGGTGCGCGCGGCGCGTCTGGCGTGCAGCGGCGGCACGACACGCAACTAGCGCGAGGAGGGCGCGGCAGCAGCCGCTCCAGTCGACTTCTCCGACGTGGTCTCCTCCCACCCATACACCCATCCCTTCCCCTCCCACACAGGCACACACACACCCACAGCACCCAATTCCCTCGCGCTCCCCCTCTCCCGCATCACACATCCCACCGCCGCCGCCACCACCACCACCCGCCCTATACCCGTATATAATTACTCGTACCCGGACGCCACCGCCGCCTGCGCCATGGGCGACTCCTCGGTGGCCGGCGCGCTCGTGCCGTCCGTGCCCAAGCCGGAGCCCGCGCCGTCCGGTGACACCTCCGCGGCGGCCGCGGCGACTACAGCGGCGCTGGCGATGCCGGAGGAGGCGGGTATGCGCGCGGCGTCGGCGTCGCCTCAGGGGCCTGCGGAGGAGGGGGAGGGCCCCGCCGATAGGGACCTCCTCTGCCCGATCTGCATGGCCGTCATCAAGGACGCCTTCCTCACCGCATGCGGCCACAGCTTCTGCTACATGTGCATCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTTGACAAGGTTCTGAAGAAAATATCAGCCCAACAAATAGCAAAAACAGCATCGCCGATCGATCAATTTCGATGTGCATTGCAACAGGGAAATGAAATGGGGGTTAAAGAGTTGGATAGCCTTATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCAGAGACAAATATGCAAATATTGCTAGTCTTCTTACACTGCCTTAGAAAGCAAAAGCTAGAAGAGTTGAATGAGATTCAAACTGATCTACAATACATCAAAGAGGATATAAGTTCTGTGGAGAGACATAGGGCAGAATTATATCGCACAAAAGAAAGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCTACTGCGCAAAAAATGTGGCCCTCTCCTATAGACAAAGCTAGCTGTCGCTTTCTTCCCAACTCTCGGACACCACTTAGTGGATCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATTTGAAAGCTCAAGTAAGCCATCAAGGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGATCCTCCTAACTCCCCTATACAATCGGGTAATGTTATTGCTAGGAAGAGGCGAGTTCAAGCACAGTTCAATGAGCTTCAAGAATACTACCTGCAAAGACGTCGTACTGGAGCACAGGCACGCAGACAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACGTTCACTCGATACAGTCGTCTACGTGTCATTGCGGAACTAAGACATGGAGACTTGTTTCACTCTGCCAATATTGTATCCAGTATTGAATTTGATCGTGATGATGAACTATTTGCTACCGCTGGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCCACTGTTGTTAATGAACCATCAGATGTGCATTGCCCAGTTGTTGAAATGGCTACCAGATCTAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGGTGAAAGTGTGGTGCACAAATCAAGAAGCAAGTGTGATCAATATTGATATGAAAGCAAATATTTGCTCGGTTAAATATAATCCTGGATCAAGCTTCTACGTTGCAGTCGGATCTGCTGATCACCATATTCATTACTTTGATTTACGTAATCCAAGTTCGCCTGTCCATATTTTTGGGGGGCACAAGAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAGCTTGCGTCTGCATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCGGTACGGACATTCAGAGGACACAAAAATGAAAAGAACTTTGTTGGCTTGTCTGTGAACAATGAATATATTGCTTGTGGAAGTGAGACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCGAAACCGGCAGCAAGCCATAGATTTGTATCTTCTGACCTGGATGATGCCGATGATGATCCTGGTTCTTATTTCATTAGTGCTGTCTGCTGGAAGAGTGATAGCCCTACGATGTTAACTGCTAACAGTCAGGGGACCATAAAAGTTCTTGTACTTGCTCCTTGATGTTATGGAGGGCGTTCAAGAGGTTCACAGTACTGTCCAGTTGTTTCCTTTCGTGTCATTATATTCCCCCAAAATTGGGAACGGGGGCATAATTGATCTCCGGTTAGGGAATGAAGTTTTGCAGATGGTCAGCTGACGTAGGGTTTTGAGGTATCAGAATGTGCATAGTCATGTTTATGTTGTATAGGTGTAATTGTGTAAAGCAGCCAAGTTATTGGTTACAAGTGTAACACGAGAAATACACATTAATAAAAAAAAAACCTCCAGCTCGTTTGTACAGAGATTGTGCTTGAACCCAGAACCTTATGTGGTAATTGCGATTGGTAATATATCTACCTGATATGATCAAACGGATGCCGTAATCAGCAATTGTTTCTTTC
CDS Sequence
- >Zm00001eb256270_T001
ATGGGCGACTCCTCGGTGGCCGGCGCGCTCGTGCCGTCCGTGCCCAAGCCGGAGCCCGCGCCGTCCGGTGACACCTCCGCGGCGGCCGCGGCGACTACAGCGGCGCTGGCGATGCCGGAGGAGGCGGGTATGCGCGCGGCGTCGGCGTCGCCTCAGGGGCCTGCGGAGGAGGGGGAGGGCCCCGCCGATAGGGACCTCCTCTGCCCGATCTGCATGGCCGTCATCAAGGACGCCTTCCTCACCGCATGCGGCCACAGCTTCTGCTACATGTGCATCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTTGACAAGGTTCTGAAGAAAATATCAGCCCAACAAATAGCAAAAACAGCATCGCCGATCGATCAATTTCGATGTGCATTGCAACAGGGAAATGAAATGGGGGTTAAAGAGTTGGATAGCCTTATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCAGAGACAAATATGCAAATATTGCTAGTCTTCTTACACTGCCTTAGAAAGCAAAAGCTAGAAGAGTTGAATGAGATTCAAACTGATCTACAATACATCAAAGAGGATATAAGTTCTGTGGAGAGACATAGGGCAGAATTATATCGCACAAAAGAAAGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCTACTGCGCAAAAAATGTGGCCCTCTCCTATAGACAAAGCTAGCTGTCGCTTTCTTCCCAACTCTCGGACACCACTTAGTGGATCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATTTGAAAGCTCAAGTAAGCCATCAAGGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGATCCTCCTAACTCCCCTATACAATCGGGTAATGTTATTGCTAGGAAGAGGCGAGTTCAAGCACAGTTCAATGAGCTTCAAGAATACTACCTGCAAAGACGTCGTACTGGAGCACAGGCACGCAGACAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACGTTCACTCGATACAGTCGTCTACGTGTCATTGCGGAACTAAGACATGGAGACTTGTTTCACTCTGCCAATATTGTATCCAGTATTGAATTTGATCGTGATGATGAACTATTTGCTACCGCTGGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCCACTGTTGTTAATGAACCATCAGATGTGCATTGCCCAGTTGTTGAAATGGCTACCAGATCTAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGAGTGTGATGGAATATGAAGAGCATGAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATTGCAAGGTGAAAGTGTGGTGCACAAATCAAGAAGCAAGTGTGATCAATATTGATATGAAAGCAAATATTTGCTCGGTTAAATATAATCCTGGATCAAGCTTCTACGTTGCAGTCGGATCTGCTGATCACCATATTCATTACTTTGATTTACGTAATCCAAGTTCGCCTGTCCATATTTTTGGGGGGCACAAGAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAGCTTGCGTCTGCATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCGGTACGGACATTCAGAGGACACAAAAATGAAAAGAACTTTGTTGGCTTGTCTGTGAACAATGAATATATTGCTTGTGGAAGTGAGACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCGAAACCGGCAGCAAGCCATAGATTTGTATCTTCTGACCTGGATGATGCCGATGATGATCCTGGTTCTTATTTCATTAGTGCTGTCTGCTGGAAGAGTGATAGCCCTACGATGTTAACTGCTAACAGTCAGGGGACCATAAAAGTTCTTGTACTTGCTCCTTGA
Protein Sequence
- >Zm00001eb256270_P001
MGDSSVAGALVPSVPKPEPAPSGDTSAAAAATTAALAMPEEAGMRAASASPQGPAEEGEGPADRDLLCPICMAVIKDAFLTACGHSFCYMCIVTHLSNKSDCPCCGHYLTKAQLYPNFLLDKVLKKISAQQIAKTASPIDQFRCALQQGNEMGVKELDSLMTLIAEKKRQMEQQESETNMQILLVFLHCLRKQKLEELNEIQTDLQYIKEDISSVERHRAELYRTKERYSMKLRMLLDEPTAQKMWPSPIDKASCRFLPNSRTPLSGSCPGTLQNKKLDLKAQVSHQGFQRRDALTSSDPPNSPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQARRQEERDIVAMNREGYHAGLQDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVDFSRTDSSMLVSGSDDCKVKVWCTNQEASVINIDMKANICSVKYNPGSSFYVAVGSADHHIHYFDLRNPSSPVHIFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNCPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAASHRFVSSDLDDADDDPGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
Source: Genetic information comes from the article