Gene Details:
- Gene ID: Zm00001eb398970
- Gene Symbol: ZmCOI6.1
- Gene Name: stress inducible protein coi6.1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- ZmCOI6.1, a novel, alternatively spliced maize gene, whose transcript level changes under abiotic stress.
- Analysis of the ZmCOI6.1 promoter sequence revealed several conserved stress-responsive cis-acting elements. Further characterization of expression showed that ZmCOI6.1 was induced not only by cold, but also by drought and salinity as well as by the signaling molecules abscisic acid and salicylic acid, indicating that ZmCOI6.1 is a stress-responsive gene.
- ZmCOI6.1 is alternatively spliced and yields two transcripts, the level of which change depending on the stress, indicating a possible mechanism of regulation at the splicing level. Constitutive expression of ZmCOI6.1 in Arabidopsis yielded plants that were less tolerant to abiotic stress, providing evidence that ZmCOI6.1 may be a negative regulator.
Function-related keywords:
- drought , stress , drought-stress , salinity , cold-stress , abiotic-stress , salicylic-acid , cold , salinity-stress , abscisic-acid
Literature:
- ZmCOI6.1, a novel, alternatively spliced maize gene, whose transcript level changes under abiotic stress DOI: 10.1016/j.plantsci.2009.03.004 ; PMID:
Related News:
Gene Resources:
- NCBI ID: LOC100276436
- UniProt accessions: C4J684
Sequences:
cDNA Sequence
- >Zm00001eb398970_T001
GAGACTCTTTCATTTCCTTCTACCGCAGCCTCAGAATTCCCCCCTCCCCCGTAGCGAAACCCTAGCCGCCACGCCAAAACCAAATCCCGCCGAGCCCGAAAAATTCCGGCGGGTTCCTTGCCGCGAATCGATTGATTTCGAGCGATTCGATTCCTTGTGATCTCTCGGCGGGGTAGAGCGCGGTCGACCGTCGGCCATGTCGAGGTGCTTCCCCTACCCGCCACCGGGGTACGTGCGGAACCCAGTGGCCGTGGCCGAGCCGGAGTCGACCGCTAAGCTCCTGAAAGAAAAGGAAAAGGCCGAAAAGAAGAAAGAGAAAAGGAGTGACAGGAAAGATCCCAAGCAGTGTGAGACGTCCAAACACTCAAAGCACAGCCATAAGAAGAGAAAGCTTGAAGATGTCATCAAAGCTGAGCAGGGTCCCAAAAGAGTACCCAAAGAATCAGTTGAGCAGTTGGAGAAGAGTGGACTCTCAGAAGAGCATGGAGCTCCTTCTTTTGTACATACGATACGGGACTCTCCTGAGAGCTCACAGGACAGCGGCAAGAGACGAAAGGTTGTCCTGTCCAGTCCTAGCCAACCTAAGAATGGAAACATTCTTCGCTTCAAGATTAAAAGTAGTCAAGATCCCCAATCAGCTGTTCTGGAGAAACCAAGGGTTCTTGAGCAACCATTGGTCCAACAAATGGGATCAGGTTCATCCCTGTCTGGCAAGCAAAATTCAAGCCATCATAAGATGAATGTGAGATCTACCTCTGGTCAGCGGAGGGTCAATGGTGACTCCCAAGCAGTACAAAAATGTTTGATTACAGAATCCCCGGCAAAGACCATGCATAGACTTGTCCCCCAGCCTGCAGCTAAGGACACACATCCTGTTGATCCCCAGTCAGCTGTTAAGGTGCCAGTTGGAAGATCGGGCCTACCTCTGAAGTTTTCGGGAAGTGTGGACCCTTCGCCTGCTAGAGTTATGAGAAGATTTGATCCTCCACCTGTTAAGATGATGTCACAGAGAGTTCACCATCCAGCTTCCATGGTGTCGCAGAAAGTTGATCCTCCGTTACCGAAGGTATTACATAAGGAAACCGGATCTGTTGTTCGCCTACCAGAAGCTGCCCGGCCTACTGTTCTTCAAAAACCCAAGGACTTGCCTTCTATCAAGCAGCAGGAGATCAGGACCTCTTCCTCAAAAGAAGAGCCCTGCTTCTCTGGTAGGAATGCAGAAGCTGTTCAAGTGCAGGATACTAAGCTCTCCCGGTCAGATATGAAGAAAATCCGCAAAGCTGAGAAAAAAGATAAGAAGTTCAGAGATCTGTTTGTTACCTGGAATCCGGTATTGATAGAGAATGAAGGTTCAGATCTTGGTGATGAAGACTGGCTGTTCAGCAGTAAAAGGAACTCCGATGCTATCATGGTTCAAAGCAGAGCTACTGATAGTTCAGTGCCGATCCATCCAATGGTGCAGCAGAAGCCTTCTTTACAACCCAGGGCAACATTTTTGCCGGACCTTAATATGTACCAGCTGCCATATGTCGTACCATTTTAAACATCTGGCGAGGTAGATGAGAATTAGATGAGATGTTGGGAGAGAGCTGTGTGGATGTGGGAGATAATGGGTTCCCTGCCGCAGTTTTCCAGCTTTGTTCCATAGTGTTTCTTTGAGGCCAATAGAGTTCTGGCAGAACTTATAATGTAATATTGATTAATTATTTCGCTCATGTATGTAAGCAGTTGAACTGCAAAATCTTGTTTCTAGGATGTTACTGTTTTATGACACGCAGTATTTGTTATATTGACC
CDS Sequence
- >Zm00001eb398970_T001
ATGTCGAGGTGCTTCCCCTACCCGCCACCGGGGTACGTGCGGAACCCAGTGGCCGTGGCCGAGCCGGAGTCGACCGCTAAGCTCCTGAAAGAAAAGGAAAAGGCCGAAAAGAAGAAAGAGAAAAGGAGTGACAGGAAAGATCCCAAGCAGTGTGAGACGTCCAAACACTCAAAGCACAGCCATAAGAAGAGAAAGCTTGAAGATGTCATCAAAGCTGAGCAGGGTCCCAAAAGAGTACCCAAAGAATCAGTTGAGCAGTTGGAGAAGAGTGGACTCTCAGAAGAGCATGGAGCTCCTTCTTTTGTACATACGATACGGGACTCTCCTGAGAGCTCACAGGACAGCGGCAAGAGACGAAAGGTTGTCCTGTCCAGTCCTAGCCAACCTAAGAATGGAAACATTCTTCGCTTCAAGATTAAAAGTAGTCAAGATCCCCAATCAGCTGTTCTGGAGAAACCAAGGGTTCTTGAGCAACCATTGGTCCAACAAATGGGATCAGGTTCATCCCTGTCTGGCAAGCAAAATTCAAGCCATCATAAGATGAATGTGAGATCTACCTCTGGTCAGCGGAGGGTCAATGGTGACTCCCAAGCAGTACAAAAATGTTTGATTACAGAATCCCCGGCAAAGACCATGCATAGACTTGTCCCCCAGCCTGCAGCTAAGGACACACATCCTGTTGATCCCCAGTCAGCTGTTAAGGTGCCAGTTGGAAGATCGGGCCTACCTCTGAAGTTTTCGGGAAGTGTGGACCCTTCGCCTGCTAGAGTTATGAGAAGATTTGATCCTCCACCTGTTAAGATGATGTCACAGAGAGTTCACCATCCAGCTTCCATGGTGTCGCAGAAAGTTGATCCTCCGTTACCGAAGGTATTACATAAGGAAACCGGATCTGTTGTTCGCCTACCAGAAGCTGCCCGGCCTACTGTTCTTCAAAAACCCAAGGACTTGCCTTCTATCAAGCAGCAGGAGATCAGGACCTCTTCCTCAAAAGAAGAGCCCTGCTTCTCTGGTAGGAATGCAGAAGCTGTTCAAGTGCAGGATACTAAGCTCTCCCGGTCAGATATGAAGAAAATCCGCAAAGCTGAGAAAAAAGATAAGAAGTTCAGAGATCTGTTTGTTACCTGGAATCCGGTATTGATAGAGAATGAAGGTTCAGATCTTGGTGATGAAGACTGGCTGTTCAGCAGTAAAAGGAACTCCGATGCTATCATGGTTCAAAGCAGAGCTACTGATAGTTCAGTGCCGATCCATCCAATGGTGCAGCAGAAGCCTTCTTTACAACCCAGGGCAACATTTTTGCCGGACCTTAATATGTACCAGCTGCCATATGTCGTACCATTTTAA
Protein Sequence
- >Zm00001eb398970_P001
MSRCFPYPPPGYVRNPVAVAEPESTAKLLKEKEKAEKKKEKRSDRKDPKQCETSKHSKHSHKKRKLEDVIKAEQGPKRVPKESVEQLEKSGLSEEHGAPSFVHTIRDSPESSQDSGKRRKVVLSSPSQPKNGNILRFKIKSSQDPQSAVLEKPRVLEQPLVQQMGSGSSLSGKQNSSHHKMNVRSTSGQRRVNGDSQAVQKCLITESPAKTMHRLVPQPAAKDTHPVDPQSAVKVPVGRSGLPLKFSGSVDPSPARVMRRFDPPPVKMMSQRVHHPASMVSQKVDPPLPKVLHKETGSVVRLPEAARPTVLQKPKDLPSIKQQEIRTSSSKEEPCFSGRNAEAVQVQDTKLSRSDMKKIRKAEKKDKKFRDLFVTWNPVLIENEGSDLGDEDWLFSSKRNSDAIMVQSRATDSSVPIHPMVQQKPSLQPRATFLPDLNMYQLPYVVPF
Source: Genetic information comes from the article