Information report for ZmCCT10;ZmCCT56
Gene Details
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Functional Descriptions
- ZmCCT10 as a candidate gene for qFH10 and found that differences between hybrids and their parental lines in DNA methylation in the differentially methylated region (DMR, –700 to –1520) of the ZmCCT10 promoter affected gene expression pattern and thereby FT in the summer maize-growing region.
- A differentially methylated region of the ZmCCT10 promoter affects flowering time in hybrid maize
- ZmCCT10 was accordingly selected as a candidate gene for qFH10.
- ZmCCT10 is orthologous to the rice photoperiod response regulator Ghd7 and is a crucial controller of variation in flowering time that has enabled the dispersion of maize from the tropics to temperate zones.
- ZmCCT10-relayed photoperiod sensitivity regulates natural variation in the arithmetical formation of male germinal cells in maize.
- ZmCCT-mediated resistance to Gibberella stalk rot is not affected by photoperiod sensitivity.
- TE1 insertion in ZmCCT caused selective depletion of H3K4me3 and enrichment of methylated GC to suppress the pathogen-induced ZmCCT expression, resulting in disease susceptibility.
- CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize.
- Functional validations indicated that the TE represses ZmCCT expression to reduce photoperiod sensitivity, thus accelerating maize spread to long-day environments.
Functional Keywords
Literature and News
- A differentially methylated region of the ZmCCT10 promoter affects flowering time in hybrid maize DOI: 10.1016/j.cj.2023.05.006 ; PMID:
- The evening complex promotes maize flowering and adaptation to temperate regions. DOI: 10.1093/plcell/koac296 ; PMID: 36173348
- ZmCCT10-relayed photoperiod sensitivity regulates natural variation in the arithmetical formation of male germinal cells in maize. DOI: 10.1111/nph.18559 ; PMID: 36266961
- CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize. DOI: 10.1073/pnas.1310949110 ; PMID: 24089449
- A transposon-directed epigenetic change in ZmCCT underlies quantitative resistance to Gibberella stalk rot in maize. DOI: 10.1111/nph.14688 ; PMID: 28722229
Gene Resources
- NCBI ID: LOC103641424
- UniProt: K7TS29
- Pfam: PF06203 PF00643
- EMBL: CM000786 , KF575661 , KF575663
- KEGG: zma:103641424
- OMA: FFAQGQH
- InterPro: IPR010402 , IPR045281
- PANTHER: PTHR31319 , PTHR31319:SF98
- PROSITE: PS51017
- OrthoDB: K7TS29
- SMR: K7TS29
- eggNOG: KOG1601
- STRING: 4577.K7TS29
- HOGENOM: CLU_078080_0_0_1
Homologs
- Arabidopsis thaliana: AT5G15850
- Oryza sativa: LOC_Os07g15770
- Hordeum vulgare: HORVU.MOREX.r3.1HG0058180
- Setaria italica: SETIT_039184mg, SETIT_011920mg
- Setaria viridis: SEVIR_7G031000v2, SEVIR_9G019800v2
- Saccharum spontaneum: Sspon.05G0015220-3D
Sequences
cDNA Sequence
- >Zm00001eb418700_T001
CTCAATTCCATCAACAAATCTCCCTCCCAAGCTAGTCGATCCATCTTGTGCACACACAGCGGATATACCTCTCTATCGATCAACAGCGGCCATGTCGTCGGGGCCAGCAGCATGCGGTGTGTGCGGCGCGGCCGCCTGCTGCCCGCACCTCTTGCACACCGGTGACGGCAACGACGACGACCTCATCAGCCGGGCCTTCTTCTCCGTCTTCCCTGTCGTCGGTCATCACCGTCGTCATGAGTCCACCAGCAGCCCCGCCATGCAGCAGCCATCGGGGTGCCTGCACGAGTTCCAGTTCTTTGGCCATCAGGACGACCACCACCACCAAGAAACCATCGCCTGGCTCTTGGACCACCCACCGCCACCTGCGCCCGAGCTTGGCGGCGACGACGGCCCGTCCCCAGCTGGTGATGAGAACGACGACCAGCCTGCGTTTCACCCGTTTGGGACACCACAGTACCACCACCCCGGAAAAGGGAACGGGAACGGGCTCACCTTTGAGCTGGACGCCACGCTGGGCCTCGGCACCGCGCGGCAAACCACTGAGACAGCAGAAGCAAGCGCCACCATCATGTCATTCTCTGGGAGCACATTCACGGACGCTGCAAGCAAGGAGCCAGCACTGATCGACGACGGCAATGAGCTGCAAATGCCGGTAGATCAGTCGTCGACGGAGAGGGAGGTTAAGTTGATGAGGTACAAGGAGAAGAGGATGAGGAGGTGCTTTGAGAAGCAGATAAGATATGCATCCAGGAAAGCCTATGCGCAGGTGAGACCCAGGGTGAAAGGCCGCTTTGCCAAGGTAACCGAATGACGAAGCCTGCTAGCTAGCTCCACCACAGCAGACGACGACGC
CDS Sequence
- >Zm00001eb418700_T001
ATGTCGTCGGGGCCAGCAGCATGCGGTGTGTGCGGCGCGGCCGCCTGCTGCCCGCACCTCTTGCACACCGGTGACGGCAACGACGACGACCTCATCAGCCGGGCCTTCTTCTCCGTCTTCCCTGTCGTCGGTCATCACCGTCGTCATGAGTCCACCAGCAGCCCCGCCATGCAGCAGCCATCGGGGTGCCTGCACGAGTTCCAGTTCTTTGGCCATCAGGACGACCACCACCACCAAGAAACCATCGCCTGGCTCTTGGACCACCCACCGCCACCTGCGCCCGAGCTTGGCGGCGACGACGGCCCGTCCCCAGCTGGTGATGAGAACGACGACCAGCCTGCGTTTCACCCGTTTGGGACACCACAGTACCACCACCCCGGAAAAGGGAACGGGAACGGGCTCACCTTTGAGCTGGACGCCACGCTGGGCCTCGGCACCGCGCGGCAAACCACTGAGACAGCAGAAGCAAGCGCCACCATCATGTCATTCTCTGGGAGCACATTCACGGACGCTGCAAGCAAGGAGCCAGCACTGATCGACGACGGCAATGAGCTGCAAATGCCGGTAGATCAGTCGTCGACGGAGAGGGAGGTTAAGTTGATGAGGTACAAGGAGAAGAGGATGAGGAGGTGCTTTGAGAAGCAGATAAGATATGCATCCAGGAAAGCCTATGCGCAGGTGAGACCCAGGGTGAAAGGCCGCTTTGCCAAGGTAACCGAATGA
Protein Sequence
- >Zm00001eb418700_P001
MSSGPAACGVCGAAACCPHLLHTGDGNDDDLISRAFFSVFPVVGHHRRHESTSSPAMQQPSGCLHEFQFFGHQDDHHHQETIAWLLDHPPPPAPELGGDDGPSPAGDENDDQPAFHPFGTPQYHHPGKGNGNGLTFELDATLGLGTARQTTETAEASATIMSFSGSTFTDAASKEPALIDDGNELQMPVDQSSTEREVKLMRYKEKRMRRCFEKQIRYASRKAYAQVRPRVKGRFAKVTE