Information report for ZmCCD1;Wc1
Gene Details
|
|
Functional Descriptions
- Mycorrhization led to a decrease in seed germination of the parasitic plant Striga hermonthica as examined in a bioassay. ZmCCD1 is proposed to be involved in cyclohexenone and mycorradicin formation in mycorrhizal maize roots but not in strigolactone formation.
- Dominant Wc1 alleles enhance he white-grain phenotype of y1.
- Dominant Wc1 kernel with white crown and pale yellow endosperm.
- In maize, roots with mycorrhizal formations have shown a higher ZmCCD1 expression and induced lower germination of Striga.
- Since the ZmCCD1 gene is involved in the formation of the yellow pigment apocarotenoids, it would be interesting in the future to understand the carotenoid levels of the lines and its relationship with Striga resistance in the maize inbred lines.
Literature and News
- Hydroxamic acids: New players in the multifactorial mechanisms of maize resistance to Striga hermonthica. DOI: 10.1016/j.plaphy.2023.108134 ; PMID: 37883916
- Maize provitamin a carotenoids, current resources, and future metabolic engineering challenges. DOI: 10.3389/fpls.2012.00029 ; PMID: 22645578
- Genome-wide association study of Striga resistance in early maturing white tropical maize inbred lines. DOI: 10.1186/s12870-020-02360-0 ; PMID: 32393176
- Cloning and characterisation of a maize carotenoid cleavage dioxygenase (ZmCCD1) and its involvement in the biosynthesis of apocarotenoids with various roles in mutualistic and parasitic interactions. DOI: 10.1007/s00425-008-0781-6 ; PMID: 18716794
Gene Resources
- NCBI ID: LOC732715
- UniProt accessions: B4FBA4
- EMBL: BT034392 , CM000785 , EU973966
- EnsemblPlants: Zm00001eb402840_T002
- Gramene: Zm00001eb402840_T002
- KEGG: zma:732715
- OMA: RYVYCAI
- ExpressionAtlas: Zm00001eb402840
- InterPro: IPR004294
- PANTHER: PTHR10543 , PTHR10543:SF89
- OrthoDB: B4FBA4
- SMR: B4FBA4
Sequences
cDNA Sequence
- >Zm00001eb402840_T002
AGACGACGAGTGGAGTGGAGTAGGACACGAGGTGGTTCCGGCCGGCCCACTCGCAGAATCTTCTGCCACTGCCCTTCCATCTCGTCCCTTAGCTACAAGTCATCTCGCCGCAACCGGAACCCGCAGCCATGGGGACGGAGGCGGAGCAGCCGGACATGGACAGCCACCGAAACGACGGCGTCGTGGTGGTGCCAGCGCCGCGCCCGCGTAAGGGGCTCGCCTCCTGGGCGCTTGACCTGCTCGAGTCCCTCGCCGTGCGCCTCGGCCACGACAAGACCAAGCCGCTCCACTGGCTCTCCGGCAACTTCGCCCCCGTCGTCGAGGAGACCCCGCCGGCCCCAAACCTTAGCGTCCGCGGACACCTCCCGGAGTGCTTGAATGGAGAGTTTGTCAGGGTTGGGCCTAATCCGAAGTTTGCTCCTGTTGCGGGGTATCACTGGTTTGATGGAGACGGGATGATTCATGCCATGCGTATTAAGGATGGAAAAGCTACCTATGTATCAAGATATGTGAAGACTGCCCGCCTCAAACAAGAGGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTTAAGGGATTTTTTGGATTGTTTATGGTCCAAATGCAGCAACTTCGGAAAAAATTCAAAGTCTTGGATTTTACCTATGGATTTGGGACAGCTAATACTGCACTTATATATCATCATGGTAAACTCATGGCCTTGTCAGAAGCAGATAAGCCATATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAGACTCTTGGCTTGTTGGATTATGACAAAAGGTTGAAACATTCTTTTACTGCCCATCCAAAGGTTGACCCTTTTACAGATGAAATGTTCACATTCGGATATTCACATGAACCTCCATACTGTACATACCGTGTGATTAACAAAGAAGGAGCTATGCTTGATCCTGTGCCAATAACAATACCGGAATCTGTAATGATGCATGATTTTGCCATCACAGAGAATTACTCTATTTTTATGGACCTCCCTTTATTGTTCCGACCAAAGGAAATGGTGAAGAACGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGGTCGTTTTGGTATTCTCCCCCGCTATGCAAAGGATGACAAACTCATCAGATGGTTTCAACTCCCTAATTGTTTCATATTCCATAATGCTAATGCTTGGGAAGAGGGTGATGAAGTTGTTCTCATTACCTGCCGCCTTGAGAATCCAGATTTGGACAAGGTGAATGGATATCAAAGTGACAAGCTCGAAAACTTCGGGAATGAGCTGTACGAGATGAGATTCAACATGAAAACGGGTGCTGCTTCACAAAAGCAATTGTCTGTTTCTGCTGTGGATTTTCCTCGTGTTAATGAGAGCTATACTGGCAGAAAGCAGCGGTATGTCTACTGCACTATACTTGACAGCATTGCGAAGGTGACTGGCATCATAAAGTTTGATCTGCATGCTGAACCGGAAAGTGGTGTGAAAGAACTTGAAGTGGGAGGAAATGTACAAGGCATATATGACCTGGGACCTGGTAGATTTGGTTCAGAGGCGATTTTTGTTCCCAAGCATCCAGGTGTGTCCGGAGAAGAAGATGACGGCTATTTGATATTCTTTGTACACGACGAGAATACAGGGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGCCTTCTTTGTAACTGAGGACCAACTGGCTCGACAGGCGGAGGGGCAGTGAAGATACGGCACCTGCAGATTCTGCACACGCGGGTACATGTTGGAAGTTATTGCAGGACATGTATATGTATAGGACAAGTTTATTACACATGTATTCGAACCACACATTACACAAGTTTATTGCAGGACGTGTATTCGAACCACACATTACACATGTATATGTGTAGGACAAGTTTATTACAGTCCTGATTGATTGCAAATTACTCAGTCTGTTGCATGCTGTGTCTGTGGTGGCATGGCTAG - >Zm00001eb402840_T001
AGACGACGAGTGGAGTGGAGTAGGACACGAGGTGGTTCCGGCCGGCCCACTCGCAGAATCTTCTGCCACTGCCCTTCCATCTCGTCCCTTAGCTACAAGTCATCTCGCCGCAACCGGAACCCGCAGCCATGGGGACGGAGGCGGAGCAGCCGGACATGGACAGCCACCGAAACGACGGCGTCGTGGTGGTGCCAGCGCCGCGCCCGCGTAAGGGGCTCGCCTCCTGGGCGCTTGACCTGCTCGAGTCCCTCGCCGTGCGCCTCGGCCACGACAAGACCAAGCCGCTCCACTGGCTCTCCGGCAACTTCGCCCCCGTCGTCGAGGAGACCCCGCCGGCCCCAAACCTTAGCGTCCGCGGACACCTCCCGGAGTGCTTGAATGGAGAGTTTGTCAGGGTTGGGCCTAATCCGAAGTTTGCTCCTGTTGCGGGGTATCACTGGTTTGATGGAGACGGGATGATTCATGCCATGCGTATTAAGGATGGAAAAGCTACCTATGTATCAAGATATGTGAAGACTGCCCGCCTCAAACAAGAGGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTTAAGGGATTTTTTGGATTGTTTATGGTCCAAATGCAGCAACTTCGGAAAAAATTCAAAGTCTTGGATTTTACCTATGGATTTGGGACAGCTAATACTGCACTTATATATCATCATGGTAAACTCATGGCCTTGTCAGAAGCAGATAAGCCATATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAGACTCTTGGCTTGTTGGATTATGACAAAAGGTTGAAACATTCTTTTACTGCCCATCCAAAGGTTGACCCTTTTACAGATGAAATGTTCACATTCGGATATTCACATGAACCTCCATACTGTACATACCGTGTGATTAACAAAGAAGGAGCTATGCTTGATCCTGTGCCAATAACAATACCGGAATCTGTAATGATGCATGATTTTGCCATCACAGAGAATTACTCTATTTTTATGGACCTCCCTTTATTGTTCCGACCAAAGGAAATGGTGAAGAACGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGGTCGTTTTGGTATTCTCCCCCGCTATGCAAAGGATGACAAACTCATCAGATGGTTTCAACTCCCTAATTGTTTCATATTCCATAATGCTAATGCTTGGGAAGAGGGTGATGAAGTTGTTCTCATTACCTGCCGCCTTGAGAATCCAGATTTGGACAAGGTGAATGGATATCAAAGTGACAAGCTCGAAAACTTCGGGAATGAGCTGTACGAGATGAGATTCAACATGAAAACGGGTGCTGCTTCACAAAAGCAATTGTCTGTTTCTGCTGTGGATTTTCCTCGTGTTAATGAGAGCTATACTGGCAGAAAGCAGCGGTATGTCTACTGCACTATACTTGACAGCATTGCGAAGGTGACTGGCATCATAAAGTTTGATCTGCATGCTGAACCGGAAAGTGGTGTGAAAGAACTTGAAGTGGGAGGAAATGTACAAGGCATATATGACCTGGGACCTGGTAGATTTGGTTCAGAGGCGATTTTTGTTCCCAAGCATCCAGGTGTGTCCGGAGAAGAAGATGACGGCTATTTGATATTCTTTGTACACGACGAGAATACAGGGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGCCTTCTTTGTAACTGAGGACCAACTGGCTCGACAGGCGGAGGGGCAGTGAAGATACGGCACCTGCAGATTCTGCACACGCGGGTACATGTTGGAAGTTATTGCAGGACATGTATATGTATAGGACAAGTTTATTACACATGTATTCGAACCACACATTACACAAGTTTATTGCAGGACGTGTATTCGAACCACACATTACACATGTATATGTGTAGGACAAGTTTATTACAGTCCTGATTGATTGCAAATTACTCAGTCTGTTGCATGCTGTGTCTGTGGTGGCATGGCTAG
CDS Sequence
- >Zm00001eb402840_T002
ATGGGGACGGAGGCGGAGCAGCCGGACATGGACAGCCACCGAAACGACGGCGTCGTGGTGGTGCCAGCGCCGCGCCCGCGTAAGGGGCTCGCCTCCTGGGCGCTTGACCTGCTCGAGTCCCTCGCCGTGCGCCTCGGCCACGACAAGACCAAGCCGCTCCACTGGCTCTCCGGCAACTTCGCCCCCGTCGTCGAGGAGACCCCGCCGGCCCCAAACCTTAGCGTCCGCGGACACCTCCCGGAGTGCTTGAATGGAGAGTTTGTCAGGGTTGGGCCTAATCCGAAGTTTGCTCCTGTTGCGGGGTATCACTGGTTTGATGGAGACGGGATGATTCATGCCATGCGTATTAAGGATGGAAAAGCTACCTATGTATCAAGATATGTGAAGACTGCCCGCCTCAAACAAGAGGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTTAAGGGATTTTTTGGATTGTTTATGGTCCAAATGCAGCAACTTCGGAAAAAATTCAAAGTCTTGGATTTTACCTATGGATTTGGGACAGCTAATACTGCACTTATATATCATCATGGTAAACTCATGGCCTTGTCAGAAGCAGATAAGCCATATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAGACTCTTGGCTTGTTGGATTATGACAAAAGGTTGAAACATTCTTTTACTGCCCATCCAAAGGTTGACCCTTTTACAGATGAAATGTTCACATTCGGATATTCACATGAACCTCCATACTGTACATACCGTGTGATTAACAAAGAAGGAGCTATGCTTGATCCTGTGCCAATAACAATACCGGAATCTGTAATGATGCATGATTTTGCCATCACAGAGAATTACTCTATTTTTATGGACCTCCCTTTATTGTTCCGACCAAAGGAAATGGTGAAGAACGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGGTCGTTTTGGTATTCTCCCCCGCTATGCAAAGGATGACAAACTCATCAGATGGTTTCAACTCCCTAATTGTTTCATATTCCATAATGCTAATGCTTGGGAAGAGGGTGATGAAGTTGTTCTCATTACCTGCCGCCTTGAGAATCCAGATTTGGACAAGGTGAATGGATATCAAAGTGACAAGCTCGAAAACTTCGGGAATGAGCTGTACGAGATGAGATTCAACATGAAAACGGGTGCTGCTTCACAAAAGCAATTGTCTGTTTCTGCTGTGGATTTTCCTCGTGTTAATGAGAGCTATACTGGCAGAAAGCAGCGGTATGTCTACTGCACTATACTTGACAGCATTGCGAAGGTGACTGGCATCATAAAGTTTGATCTGCATGCTGAACCGGAAAGTGGTGTGAAAGAACTTGAAGTGGGAGGAAATGTACAAGGCATATATGACCTGGGACCTGGTAGATTTGGTTCAGAGGCGATTTTTGTTCCCAAGCATCCAGGTGTGTCCGGAGAAGAAGATGACGGCTATTTGATATTCTTTGTACACGACGAGAATACAGGGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGCCTTCTTTGTAACTGAGGACCAACTGGCTCGACAGGCGGAGGGGCAGTGA - >Zm00001eb402840_T001
ATGGGGACGGAGGCGGAGCAGCCGGACATGGACAGCCACCGAAACGACGGCGTCGTGGTGGTGCCAGCGCCGCGCCCGCGTAAGGGGCTCGCCTCCTGGGCGCTTGACCTGCTCGAGTCCCTCGCCGTGCGCCTCGGCCACGACAAGACCAAGCCGCTCCACTGGCTCTCCGGCAACTTCGCCCCCGTCGTCGAGGAGACCCCGCCGGCCCCAAACCTTAGCGTCCGCGGACACCTCCCGGAGTGCTTGAATGGAGAGTTTGTCAGGGTTGGGCCTAATCCGAAGTTTGCTCCTGTTGCGGGGTATCACTGGTTTGATGGAGACGGGATGATTCATGCCATGCGTATTAAGGATGGAAAAGCTACCTATGTATCAAGATATGTGAAGACTGCCCGCCTCAAACAAGAGGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTTAAGGGATTTTTTGGATTGTTTATGGTCCAAATGCAGCAACTTCGGAAAAAATTCAAAGTCTTGGATTTTACCTATGGATTTGGGACAGCTAATACTGCACTTATATATCATCATGGTAAACTCATGGCCTTGTCAGAAGCAGATAAGCCATATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAGACTCTTGGCTTGTTGGATTATGACAAAAGGTTGAAACATTCTTTTACTGCCCATCCAAAGGTTGACCCTTTTACAGATGAAATGTTCACATTCGGATATTCACATGAACCTCCATACTGTACATACCGTGTGATTAACAAAGAAGGAGCTATGCTTGATCCTGTGCCAATAACAATACCGGAATCTGTAATGATGCATGATTTTGCCATCACAGAGAATTACTCTATTTTTATGGACCTCCCTTTATTGTTCCGACCAAAGGAAATGGTGAAGAACGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGGTCGTTTTGGTATTCTCCCCCGCTATGCAAAGGATGACAAACTCATCAGATGGTTTCAACTCCCTAATTGTTTCATATTCCATAATGCTAATGCTTGGGAAGAGGGTGATGAAGTTGTTCTCATTACCTGCCGCCTTGAGAATCCAGATTTGGACAAGGTGAATGGATATCAAAGTGACAAGCTCGAAAACTTCGGGAATGAGCTGTACGAGATGAGATTCAACATGAAAACGGGTGCTGCTTCACAAAAGCAATTGTCTGTTTCTGCTGTGGATTTTCCTCGTGTTAATGAGAGCTATACTGGCAGAAAGCAGCGGTATGTCTACTGCACTATACTTGACAGCATTGCGAAGGTGACTGGCATCATAAAGTTTGATCTGCATGCTGAACCGGAAAGTGGTGTGAAAGAACTTGAAGTGGGAGGAAATGTACAAGGCATATATGACCTGGGACCTGGTAGATTTGGTTCAGAGGCGATTTTTGTTCCCAAGCATCCAGGTGTGTCCGGAGAAGAAGATGACGGCTATTTGATATTCTTTGTACACGACGAGAATACAGGGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGCCTTCTTTGTAACTGAGGACCAACTGGCTCGACAGGCGGAGGGGCAGTGA
Protein Sequence
- >Zm00001eb402840_P002
MGTEAEQPDMDSHRNDGVVVVPAPRPRKGLASWALDLLESLAVRLGHDKTKPLHWLSGNFAPVVEETPPAPNLSVRGHLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTARLKQEEYFGGAKFMKIGDLKGFFGLFMVQMQQLRKKFKVLDFTYGFGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFTFGYSHEPPYCTYRVINKEGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKGRFGILPRYAKDDKLIRWFQLPNCFIFHNANAWEEGDEVVLITCRLENPDLDKVNGYQSDKLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRVNESYTGRKQRYVYCTILDSIAKVTGIIKFDLHAEPESGVKELEVGGNVQGIYDLGPGRFGSEAIFVPKHPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEDQLARQAEGQ - >Zm00001eb402840_P001
MGTEAEQPDMDSHRNDGVVVVPAPRPRKGLASWALDLLESLAVRLGHDKTKPLHWLSGNFAPVVEETPPAPNLSVRGHLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTARLKQEEYFGGAKFMKIGDLKGFFGLFMVQMQQLRKKFKVLDFTYGFGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFTFGYSHEPPYCTYRVINKEGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKGRFGILPRYAKDDKLIRWFQLPNCFIFHNANAWEEGDEVVLITCRLENPDLDKVNGYQSDKLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRVNESYTGRKQRYVYCTILDSIAKVTGIIKFDLHAEPESGVKELEVGGNVQGIYDLGPGRFGSEAIFVPKHPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEDQLARQAEGQ