Gene Details:
- Gene ID: Zm00001eb354200
- Gene Symbol: ZmAFB1 tir1
- Gene Name: transport inhibitor response1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- After transportation to the target sites, auxin binds to the receptor TRANSPORT INHIBITOR RESPONSE1 (tir1) or AUXIN-related F-BOX (AFB) proteins, which facilitate the degradation of AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA) repressors and disrupt the recruitment of TOPLESS (TPL) corepressors, and as a result, AUXIN RESPONSE FACTOR (ARF) transcription factors (TFs) are released from the repressor complex and activate downstream genes.
- tir1 encodes a member of a class of F-BOX proteins shown to bind auxin and facilitate degradation of the transcriptional repressor Aux/IAA proteins.
Function-related keywords:
- transcription-factor , auxin , iaa , auxin-response , auxin-transport , transcriptional-repressor , as-transport
Literature:
- The Genetic Structures and Molecular Mechanisms Underlying Ear Traits in Maize (Zea mays L.). DOI: 10.3390/cells12141900 ; PMID: 37508564
Related News:
Gene Resources:
- NCBI ID: LOC103635896
- UniProt accessions: K7UXQ0
Sequences:
cDNA Sequence
- >Zm00001eb354200_T001
AGAGCAGTATTTTAAAGTAGCAAAGAGAAGAAGCCTGGGGGAGAGAGAGACGAGAGCAGGAGACAGAGGGGCTCCCCCCCCACCCCCGAGCCCAAACGCAGCTAGCTCCCCATTCCACCCAAGCTCCCGCAGCCAGATGCTCTCCCCCGCTCGAGCCCCACCGCCGCCGCCCGTCCCCGCCGCCGGGTAGACCGCCCGATCCGACGGCGCCCGCCGCACCCATGGGCCGCGGCGGCGCGCGCGCGGCCCCCGCCGCCGCGGTGCCGCCCTGGCACGCGCTCCCGGACGAGGTCTGGGAGCACGCCTTCTCCTTCCTCCCCGCGGACTCGGACCGGGGCGCCGCCGCGTGCGCCTGCCACGCCTGGCTCCGCTTCGAGCGCCGCTCGCGCCGCCGCCTTGCCGTCGCCAACTGCTACGCCGCGTCCCCGCGCGACGCCGTCGAGCGCTTCCCCGCCGTCCGCGCCGTCGAGGTCAAGGGCAAGCCCCACTTCGCCGACTTCGGCCTCGTTCCGCCCGCCTGGGGCGCCGACGCCGCGCCCTGGGTCGCCGCCGCCGCCGCCGGCTGGCCGCTGCTCGAGGAGATTAGCTTTAAGCGCATGGTCGTCACCGACGACTGCCTCGAGATGATCGCGGCCTCCTTCAGGAACTTCCAGGTGCTGCGCCTCGTCTCCTGCGAGGGCTTCAGTACAGCCGGCCTCGCTGCCATTGCCGCTGCTTGCAGAAATCTAAGAGAACTTGACCTTCAGGAGAATGAGATTGAGGATTGCTCTATTCATTGGCTCAGTCTATTTCCAGTATCTTTCACTTCTTTGGTAACTCTAAATTTTTCATGCCTAGAGGGGGATGTCAATATCACTGTACTTGAACAATTAGTAACCAGATGCAGCAACCTCAAGACTCTCAAGCTCAACAATGCTATACCTCTTGACAAGCTTGCTAACCTCCTTCGCAAGGCTCCTCAGATTGTAGAACTCGGAACAGGAAGATTCTCTGCAGATTACCATCCGGATCTCTTTTCGAAGCTTGAAGCAGCATTTGCTGGCTGTAAAAGCTTAAGAAGGCTCTCTGGGGCTTGGGATGCCGTTCCAGAATACCTGCCAGCATTTTATTGTGTATGCGAAGGCCTCACATCACTAAATCTGAGCTATGCTACTGTACGAGGCCCTGAACTGATTAAATTCATTAGCAGATGCAAAAATTTGCAACTCTTATGGGTGATGGACTTGATTGAAGACCATGGTCTTGCTGTTGTGGCATCGTCTTGTAACAAACTGCAGGAGTTGCGGGTTTTCCCTTCTGCTCCTTTCGAAGCAGCTGAGCAGGTCTCTTTGACTGAAAGAGGTCTTGTTGATGTATCTGCCAGTTGCCCAATGCTGGAGTCAGTCCTCTACTTTTGCAGACGGATGACCAACGAGGCCCTTATTACCATCGCGAAGAACCGGCCCAACTTCACTTGCTTCCGCCTATGCATCATTGAGCCTCACACACCAGATTACATTACACACCAGCCTCTTGATGCAGGTTTTAGTGCCATTGTGGAATCATGCAAGGGCCTCAGGCGGCTTTCTGTTTCAGGCCTTCTCACGGACAGTGTATTTAAATCCATCGGGGCACATGCTGACCGTCTTGAGATGCTCTCGATTGCCTTCGCCGGGAACAGTGATTTGGGCCTCCATTACATCCTATCGGGCTGCAAGAGCTTGAAGAAGCTAGAGATTAGGGACTGCCCATTTGGTGACAAGCCCTTGCTGGCAAACGCTGCCAAGCTGGAGACAATGCGATCCCTTTGGATGTCGACGTGCTCAATGACCTTGGGCGCATGCCGGCAGCTTGCGCGCAAGATGCCCCGTCTTAGTGTGGAGGTCATGAATGATCCTCGACGGGGATTCCCCTTGGACTCTCTAACAGATGAGAGCCCTGTTGAGACGTTGTATGTCTACCGGACAATTTCAGGTCCAAGGTCCGACACACCAGCTTGTGTCCAGATTCTCTAAGGGGCAGCTGTGGTCTACAAAGGTACTATGGAAGCATCCATTTTCAATCACATCATGTACCTTCAACACCTTACTAGCATAACCTGGATCGTCTCCTTGAAGTAGCAAGGCTGGTGACCTCGGTAATCCTGTCATAATCTCTGCTTAGCTGTACAACTGTTTCTGGGAGTTTAGGGTGAGAGACTCAGGGTCCCTTTCAGGTGTTAATAACTGTAGGGAGGACACTCGATGAGTTACAGGAACTACTAGATAGCGTCTTGAGGAAACTTGGGTTTGTTTTCTTAGCGTGCCTAGTTCTTTTCATGTATAAAAAAATATGGGATCATTCCAATGCTGCCACAATGTACTGTACTATTGGAACAATTGTACTTGGAGCCTCTACTTTTTTGAGTTTTGACCCCCTCCCC
CDS Sequence
- >Zm00001eb354200_T001
ATGGGCCGCGGCGGCGCGCGCGCGGCCCCCGCCGCCGCGGTGCCGCCCTGGCACGCGCTCCCGGACGAGGTCTGGGAGCACGCCTTCTCCTTCCTCCCCGCGGACTCGGACCGGGGCGCCGCCGCGTGCGCCTGCCACGCCTGGCTCCGCTTCGAGCGCCGCTCGCGCCGCCGCCTTGCCGTCGCCAACTGCTACGCCGCGTCCCCGCGCGACGCCGTCGAGCGCTTCCCCGCCGTCCGCGCCGTCGAGGTCAAGGGCAAGCCCCACTTCGCCGACTTCGGCCTCGTTCCGCCCGCCTGGGGCGCCGACGCCGCGCCCTGGGTCGCCGCCGCCGCCGCCGGCTGGCCGCTGCTCGAGGAGATTAGCTTTAAGCGCATGGTCGTCACCGACGACTGCCTCGAGATGATCGCGGCCTCCTTCAGGAACTTCCAGGTGCTGCGCCTCGTCTCCTGCGAGGGCTTCAGTACAGCCGGCCTCGCTGCCATTGCCGCTGCTTGCAGAAATCTAAGAGAACTTGACCTTCAGGAGAATGAGATTGAGGATTGCTCTATTCATTGGCTCAGTCTATTTCCAGTATCTTTCACTTCTTTGGTAACTCTAAATTTTTCATGCCTAGAGGGGGATGTCAATATCACTGTACTTGAACAATTAGTAACCAGATGCAGCAACCTCAAGACTCTCAAGCTCAACAATGCTATACCTCTTGACAAGCTTGCTAACCTCCTTCGCAAGGCTCCTCAGATTGTAGAACTCGGAACAGGAAGATTCTCTGCAGATTACCATCCGGATCTCTTTTCGAAGCTTGAAGCAGCATTTGCTGGCTGTAAAAGCTTAAGAAGGCTCTCTGGGGCTTGGGATGCCGTTCCAGAATACCTGCCAGCATTTTATTGTGTATGCGAAGGCCTCACATCACTAAATCTGAGCTATGCTACTGTACGAGGCCCTGAACTGATTAAATTCATTAGCAGATGCAAAAATTTGCAACTCTTATGGGTGATGGACTTGATTGAAGACCATGGTCTTGCTGTTGTGGCATCGTCTTGTAACAAACTGCAGGAGTTGCGGGTTTTCCCTTCTGCTCCTTTCGAAGCAGCTGAGCAGGTCTCTTTGACTGAAAGAGGTCTTGTTGATGTATCTGCCAGTTGCCCAATGCTGGAGTCAGTCCTCTACTTTTGCAGACGGATGACCAACGAGGCCCTTATTACCATCGCGAAGAACCGGCCCAACTTCACTTGCTTCCGCCTATGCATCATTGAGCCTCACACACCAGATTACATTACACACCAGCCTCTTGATGCAGGTTTTAGTGCCATTGTGGAATCATGCAAGGGCCTCAGGCGGCTTTCTGTTTCAGGCCTTCTCACGGACAGTGTATTTAAATCCATCGGGGCACATGCTGACCGTCTTGAGATGCTCTCGATTGCCTTCGCCGGGAACAGTGATTTGGGCCTCCATTACATCCTATCGGGCTGCAAGAGCTTGAAGAAGCTAGAGATTAGGGACTGCCCATTTGGTGACAAGCCCTTGCTGGCAAACGCTGCCAAGCTGGAGACAATGCGATCCCTTTGGATGTCGACGTGCTCAATGACCTTGGGCGCATGCCGGCAGCTTGCGCGCAAGATGCCCCGTCTTAGTGTGGAGGTCATGAATGATCCTCGACGGGGATTCCCCTTGGACTCTCTAACAGATGAGAGCCCTGTTGAGACGTTGTATGTCTACCGGACAATTTCAGGTCCAAGGTCCGACACACCAGCTTGTGTCCAGATTCTCTAA
Protein Sequence
- >Zm00001eb354200_P001
MGRGGARAAPAAAVPPWHALPDEVWEHAFSFLPADSDRGAAACACHAWLRFERRSRRRLAVANCYAASPRDAVERFPAVRAVEVKGKPHFADFGLVPPAWGADAAPWVAAAAAGWPLLEEISFKRMVVTDDCLEMIAASFRNFQVLRLVSCEGFSTAGLAAIAAACRNLRELDLQENEIEDCSIHWLSLFPVSFTSLVTLNFSCLEGDVNITVLEQLVTRCSNLKTLKLNNAIPLDKLANLLRKAPQIVELGTGRFSADYHPDLFSKLEAAFAGCKSLRRLSGAWDAVPEYLPAFYCVCEGLTSLNLSYATVRGPELIKFISRCKNLQLLWVMDLIEDHGLAVVASSCNKLQELRVFPSAPFEAAEQVSLTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCIIEPHTPDYITHQPLDAGFSAIVESCKGLRRLSVSGLLTDSVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSTCSMTLGACRQLARKMPRLSVEVMNDPRRGFPLDSLTDESPVETLYVYRTISGPRSDTPACVQIL
Source: Genetic information comes from the article