Information report for Chr.9_ClpP5
Gene Details
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Functional Descriptions
- Taking the positional cloning approach, the Chr.9_ClpP5|clpp5|v30 gene, one of the proteolytic subunits of the chloroplast Clp protease complex, was identified and validated as the candidate gene for vyl.
- The B73 Chr.9_ClpP5|clpp5|v30 protein consists of 281 amino acids, has a predicted chloroplast transit peptide at the N-terminal and a typical Ser–His–Asp catalytic triad.
- Sequence analysis showed that there were multiple alternative splicing variants of the Chr.9_ClpP5|clpp5|v30 transcripts in the vyl mutant plants, all of which caused major changes in amino acid sequences and resulted in truncated proteins.
- Disruption in vyl-modifier (Chr.1_Chr.9_ClpP5|clpp5|v30) alone does not result in any visible phenotype while loss of vyl (Chr.9_ClpP5|clpp5|v30) results in a chlorotic leaf phenotype and defects in chloroplast thylakoid stacking at seedling stage, suggesting the primary role of Chr.9_ClpP5|clpp5|v30.
Functional Keywords
- leaf , chloroplast , seedling , protein
Literature and News
Gene Resources
- NCBI ID: LOC100194286
- UniProt accessions: B4FI50
- EMBL: BT036788
- AlphaFoldDB: B4FI50
- InterPro: IPR023562 , IPR029045
- PANTHER: PTHR10381 , PTHR10381:SF12
- SUPFAM: SSF52096
- Gene3D: 3.90.226.10
Sequences
cDNA Sequence
- >Zm00001eb396050_T004
CTCCGTTACCAGTTACCTCGCCTCGCGGATAAGAGGCGAGGGCTAGCAAACCAAAGCCCCTTCCGCCCTCCGCCCAAAACCCCACGCGAGCACCCCATTCCCATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTGCCTTACGGGGCTAATCCGCGGCGCGGGATTTGGTCGATCAGGAGCGTGGGCCGTCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAGTCATGAAGTGTGCTAGAACTCCGTCAAACATTTTTGTTGTATCAATGTGTCTGTTGGAAGCCCTGGCTACGTAATATTCTACGTCCAAATGCATCAAAGATTGTACAAAACAAGATATGCGGTTAGGATATCCATCCTTGGTGATGGATATTGGAACTAAACTAACCTAACCCTTAGAGTTAATTTGTCAACTCTATTTTTCTAAGGAAATTCCTCTCATAAGGCTTGGTTTCCTCGTCTATGTACTCTATATGGATGCCTTTTTTTATAGGACCGATGTCTTTCTATTTTAGGTCAACAGGTGACGGTAATAACTGTGTCTTCATTAGGGCATGTGCCCCCATTAATTAAGGGTTTCTTGAGGGATCAAGTGAGAAAAAAAATCAAGAGATGATTTTCCG - >Zm00001eb396050_T003
CTCCGTTACCAGTTACCTCGCCTCGCGGATAAGAGGCGAGGGCTAGCAAACCAAAGCCCCTTCCGCCCTCCGCCCAAAACCCCACGCGAGCACCCCATTCCCATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTGCCTTACGGGGCTAATCCGCGGCGCGGGATTTGGTCGATCAGGAGCGTGGGCCGTCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAGTCATGAAGTGTGCTAGAACTCCGTCAAACATTTTTGTTGTATCAATGTGTCTGTTGGAAGCCCTGGCTACGTAATATTCTACGTCCAAATGCATCAAAGATTGTACAAAACAAGATATGCGGTTAGGATATCCATCCTTGGTGATGGATATTGGAACTAAACTAACCTAACCCTTAGAGTTAATTTGTCAACTCTATTTTTCTAAGGAAATTCCTCTCATAAGGCTTGGTTTCCTCGTCTATGTACTCTATATGGATGCCTTTTTTTATAGGACCGATGTCTTTCTATTTTAGGTCAACAGGTGACGGTAATAACTGTGTCTTCATTAGGGCATGTGCCCCCATTAATTAAGGGTTTCTTGAGGGATCAAGTGAGAAAAAAAATCAAGAGATGATTTTCCG - >Zm00001eb396050_T001
CTCCGTTACCAGTTACCTCGCCTCGCGGATAAGAGGCGAGGGCTAGCAAACCAAAGCCCCTTCCGCCCTCCGCCCAAAACCCCACGCGAGCACCCCATTCCCATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTGCCTTACGGGGCTAATCCGCGGCGCGGGATTTGGTCGATCAGGAGCGTGGGCCGTCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAGTCATGAAGTGTGCTAGAACTCCGTCAAACATTTTTGTTGTATCAATGTGTCTGTTGGAAGCCCTGGCTACGTAATATTCTACGTCCAAATGCATCAAAGATTGTACAAAACAAGATATGCGGTTAGGATATCCATCCTTGGTGATGGATATTGGAACTAAACTAACCTAACCCTTAGAGTTAATTTGTCAACTCTATTTTTCTAAGGAAATTCCTCTCATAAGGCTTGGTTTCCTCGTCTATGTACTCTATATGGATGCCTTTTTTTATAGGACCGATGTCTTTCTATTTTAGGTCAACAGGTGACGGTAATAACTGTGTCTTCATTAGGGCATGTGCCCCCATTAATTAAGGGTTTCTTGAGGGATCAAGTGAGAAAAAAAATCAAGAGATGATTTTCCG - >Zm00001eb396050_T002
CTCCGTTACCAGTTACCTCGCCTCGCGGATAAGAGGCGAGGGCTAGCAAACCAAAGCCCCTTCCGCCCTCCGCCCAAAACCCCACGCGAGCACCCCATTCCCATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTGCCTTACGGGGCTAATCCGCGGCGCGGGATTTGGTCGATCAGGAGCGTGGGCCGTCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAGTCATGAAGTGTGCTAGAACTCCGTCAAACATTTTTGTTGTATCAATGTGTCTGTTGGAAGCCCTGGCTACGTAATATTCTACGTCCAAATGCATCAAAGATTGTACAAAACAAGATATGCGGTTAGGATATCCATCCTTGGTGATGGATATTGGAACTAAACTAACCTAACCCTTAGAGTTAATTTGTCAACTCTATTTTTCTAAGGAAATTCCTCTCATAAGGCTTGGTTTCCTCGTCTATGTACTCTATATGGATGCCTTTTTTTATAGGACCGATGTCTTTCTATTTTAGGTCAACAGGTGACGGTAATAACTGTGTCTTCATTAGGGCATGTGCCCCCATTAATTAAGGGTTTCTTGAGGGATCAAGTGAGAAAAAAAATCAAGAGATGATTTTCCG - >Zm00001eb396050_T005
CTCCGTTACCAGTTACCTCGCCTCGCGGATAAGAGGCGAGGGCTAGCAAACCAAAGCCCCTTCCGCCCTCCGCCCAAAACCCCACGCGAGCACCCCATTCCCATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTGCCTTACGGGGCTAATCCGCGGCGCGGGATTTGGTCGATCAGGAGCGTGGGCCGTCGCCCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAGTCATGAAGTGTGCTAGAACTCCGTCAAACATTTTTGTTGTATCAATGTGTCTGTTGGAAGCCCTGGCTACGTAATATTCTACGTCCAAATGCATCAAAGATTGTACAAAACAAGATATGCGGTTAGGATATCCATCCTTGGTGATGGATATTGGAACTAAACTAACCTAACCCTTAGAGTTAATTTGTCAACTCTATTTTTCTAAGGAAATTCCTCTCATAAGGCTTGGTTTCCTCGTCTATGTACTCTATATGGATGCCTTTTTTTATAGGACCGATGTCTTTCTATTTTAGGTCAACAGGTGACGGTAATAACTGTGTCTTCATTAGGGCATGTGCCCCCATTAATTAAGGGTTTCTTGAGGGATCAAGTGAGAAAAAAAATCAAGAGATGATTTTCCG
CDS Sequence
- >Zm00001eb396050_T004
ATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAG - >Zm00001eb396050_T003
ATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAG - >Zm00001eb396050_T001
ATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAG - >Zm00001eb396050_T002
ATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAG - >Zm00001eb396050_T005
ATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAGGATATCATTATGTATGTGAATTCGCCAGGAGGGTCAGTGACAGCTGGAATGGCTATATTTGATACAATGAAGCATATCAGGCCTGATGTATCCACTGTTTGTATTGGACTAGCTGCAAGCATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAGGCCAATGAGATGCTGCACCACAAGGCGAACTTAAATGGATACCTTGCATACCACACTGGGCAGCCCCTGGATAAGATCAACGTAGATACTGACCGTGACTACTTCATGAGCGCGAAAGAAGCAAAGGAGTATGGCCTTATTGATGGAGTAATCATGAATCCCCTCAAGGCCCTTCAACCACTTCCAGCTTCCAGTTAG
Protein Sequence
- >Zm00001eb396050_P004
MVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS - >Zm00001eb396050_P003
MVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS - >Zm00001eb396050_P001
MVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS - >Zm00001eb396050_P002
MVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS - >Zm00001eb396050_P005
MVMERFQSVVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKALQPLPASS