Information report for DEK58
Gene Details
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Functional Descriptions
- DEK58 encodes an Rrp15p domain-containing protein with 15.3% identity to yeast Rrp15. Over-expression of DEK58 rescues the mutant phenotype.
- DEK58 is localized in the nucleolus. Ribosome profiling and RNA gel blot analyses show that the absence of DEK58 reduces ribosome assembly and impedes pre-rRNA processing, accompanied by the accumulation of nearly all the pre-rRNA processing intermediates and the production of an aberrant processing product P-25S*.
- DEK58 is essential to seed development in maize. It functions in the early stage of pre-rRNA processing in ribosome biogenesis, possibly through interacting with ZmSSF1 and ZmCK2α in maize.
- This event occurs during the pre-90S stage, as 35S serves as a diagnostic intermediate for this early processome, implying that DEK58 plays a role in the early stage of pre-rRNA processing in maize.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC100280074
- UniProt accessions: B4FYQ9
- EMBL: BT042247 , CM007650
- EnsemblPlants: Zm00001eb298370_T002
- Gramene: Zm00001eb298370_T002
- KEGG: zma:100280074
- OMA: MPSHQDK
- ExpressionAtlas: Zm00001eb298370
- InterPro: IPR012459
- PANTHER: PTHR13245 , PTHR13245:SF14
- OrthoDB: B4FYQ9
- SMR: B4FYQ9
Sequences
cDNA Sequence
- >Zm00001eb298370_T001
GGGGCCGCGCGGCTATGGGCGGAGTGAAGGAAGCAGGGAAGCATCAGCAGCGCCGCCGCCATCACTGCTACGCTGCCGGCGCTAGAGCCCTAAACCCTAGCTAGGGCTAGGCCATCCATGGCCGCCTCTCCCCAGACTCTGTCAGCTCCCCCGCCCGCCGCCGCGGCCGTCCCGAACCTCGGCGGCAAGCGCAAGAGGCAACCCAAGGGCAAGAAGAATAAGAAGAACAAACTCGCGCGCTCCGACCAGGATGACTCCGTCCGCCGCCGCCGCAACAAGCCGAGCGCCAAGTTCCTCAAGCTGCTCCGCAAGCGGGCCCGCGACTACAACTCCGACGACGAGGATGAAGCTGGTGACGACCGGCAGCAGGAGCACCTGCCGAATCCTCAACGCCGCGTTGACGAGGACGACGACGAGGCCCTCTCTCACTCCGAGCCGGAGGAGGGCGAGGACGAGGACGAAGAGGAGGGGGCCTCCAGCTCGGCCGTCACGAGGTTCGAGCAAGGCTGCAGGGCGTTCCGCGTCGCCTTTCTCAAGATCATGGCCAAGAAACTCCCCGATGATCCCCTGGGTCCAATCCTGTCAGCGCACAAGACATTGGTAGCCGCCAAGTTAGCCGAGGAGGTGGAGGAGCACAAGCCCAAGCGGGAGGCTCGGAAGGAGAAGCGCGTGGCAGCAGAGAAGGGGCATGTCATACCTAAAGACCACTTGGACAGCAAAGAGAAGGAGCTCATCAAGGTTGCAACCAAGGGGGTTGTCAGGCTTTTCAATGCGGTGAGCAAGGCACAGAAATCTCGAAAAGATTTGAACCCATCAAGGACTAAAGATGCCACAGTTATAGCAAAAGAAAGAAAAAACACCTTCCTATCAGAACTGGAGATGCCATCTCATCAAGATAAAAAGAGGAATACATCTTCAAATTTCTCAAAGCACGCCGTCAAAGATGAAGATGAACCAGCATGGGCACCTCTTCGTGACACATACATGCTTGGTTCTAAATTGAAGGACTGGGACAAAATGAAGGTAATGTCTCCTCATTGATGTGTTCTTTTTTCTGTTGGCCACGAAGTGGAAATTTATGCGCAGTCTGTCTGCCTTTTGTCTCTAACTGACCTTTTTTTTGTTTTATGAGTAGGATTCTTCCGCTGTCAGTGAGGAAAAAAAGGTTCCTTCAATCGACTCTTCTGATGAGGAATAGAAACATAGTTAGTATGGAGCTTGTATCTTGTTGTCCGTTGCTGGTAAAACGTGTTGAGATGGGTGTATGTGTATTCAGATTATCAATTCCACACCTCACTCACCCTTTTCTGGAGATTTTTTTTGGTTGCATTGCATTTGTTCTAAATCTATAGTATATATGCATCCTTTATTATACTGGCATTAGTGATGGATGTGAACAAAACACCAGTATTTAGAACTTTGT - >Zm00001eb298370_T002
GGGGCCGCGCGGCTATGGGCGGAGTGAAGGAAGCAGGGAAGCATCAGCAGCGCCGCCGCCATCACTGCTACGCTGCCGGCGCTAGAGCCCTAAACCCTAGCTAGGGCTAGGCCATCCATGGCCGCCTCTCCCCAGACTCTGTCAGCTCCCCCGCCCGCCGCCGCGGCCGTCCCGAACCTCGGCGGCAAGCGCAAGAGGCAACCCAAGGGCAAGAAGAATAAGAAGAACAAACTCGCGCGCTCCGACCAGGATGACTCCGTCCGCCGCCGCCGCAACAAGCCGAGCGCCAAGTTCCTCAAGCTGCTCCGCAAGCGGGCCCGCGACTACAACTCCGACGACGAGGATGAAGCTGGTGACGACCGGCAGCAGGAGCACCTGCCGAATCCTCAACGCCGCGTTGACGAGGACGACGACGAGGCCCTCTCTCACTCCGAGCCGGAGGAGGGCGAGGACGAGGACGAAGAGGAGGGGGCCTCCAGCTCGGCCGTCACGAGGTTCGAGCAAGGCTGCAGGGCGTTCCGCGTCGCCTTTCTCAAGATCATGGCCAAGAAACTCCCCGATGATCCCCTGGGTCCAATCCTGTCAGCGCACAAGACATTGGTAGCCGCCAAGTTAGCCGAGGAGGTGGAGGAGCACAAGCCCAAGCGGGAGGCTCGGAAGGAGAAGCGCGTGGCAGCAGAGAAGGGGCATGTCATACCTAAAGACCACTTGGACAGCAAAGAGAAGGAGCTCATCAAGGTTGCAACCAAGGGGGTTGTCAGGCTTTTCAATGCGGTGAGCAAGGCACAGAAATCTCGAAAAGATTTGAACCCATCAAGGACTAAAGATGCCACAGTTATAGCAAAAGAAAGAAAAAACACCTTCCTATCAGAACTGGAGATGCCATCTCATCAAGATAAAAAGAGGAATACATCTTCAAATTTCTCAAAGCACGCCGTCAAAGATGAAGATGAACCAGCATGGGCACCTCTTCGTGACACATACATGCTTGGTTCTAAATTGAAGGACTGGGACAAAATGAAGGTAATGTCTCCTCATTGATGTGTTCTTTTTTCTGTTGGCCACGAAGTGGAAATTTATGCGCAGTCTGTCTGCCTTTTGTCTCTAACTGACCTTTTTTTTGTTTTATGAGTAGGATTCTTCCGCTGTCAGTGAGGAAAAAAAGGTTCCTTCAATCGACTCTTCTGATGAGGAATAGAAACATAGTTAGTATGGAGCTTGTATCTTGTTGTCCGTTGCTGGTAAAACGTGTTGAGATGGGTGTATGTGTATTCAGATTATCAATTCCACACCTCACTCACCCTTTTCTGGAGATTTTTTTTGGTTGCATTGCATTTGTTCTAAATCTATAGTATATATGCATCCTTTATTATACTGGCATTAGTGATGGATGTGAACAAAACACCAGTATTTAGAACTTTGT
CDS Sequence
- >Zm00001eb298370_T001
ATGGCCGCCTCTCCCCAGACTCTGTCAGCTCCCCCGCCCGCCGCCGCGGCCGTCCCGAACCTCGGCGGCAAGCGCAAGAGGCAACCCAAGGGCAAGAAGAATAAGAAGAACAAACTCGCGCGCTCCGACCAGGATGACTCCGTCCGCCGCCGCCGCAACAAGCCGAGCGCCAAGTTCCTCAAGCTGCTCCGCAAGCGGGCCCGCGACTACAACTCCGACGACGAGGATGAAGCTGGTGACGACCGGCAGCAGGAGCACCTGCCGAATCCTCAACGCCGCGTTGACGAGGACGACGACGAGGCCCTCTCTCACTCCGAGCCGGAGGAGGGCGAGGACGAGGACGAAGAGGAGGGGGCCTCCAGCTCGGCCGTCACGAGGTTCGAGCAAGGCTGCAGGGCGTTCCGCGTCGCCTTTCTCAAGATCATGGCCAAGAAACTCCCCGATGATCCCCTGGGTCCAATCCTGTCAGCGCACAAGACATTGGTAGCCGCCAAGTTAGCCGAGGAGGTGGAGGAGCACAAGCCCAAGCGGGAGGCTCGGAAGGAGAAGCGCGTGGCAGCAGAGAAGGGGCATGTCATACCTAAAGACCACTTGGACAGCAAAGAGAAGGAGCTCATCAAGGTTGCAACCAAGGGGGTTGTCAGGCTTTTCAATGCGGTGAGCAAGGCACAGAAATCTCGAAAAGATTTGAACCCATCAAGGACTAAAGATGCCACAGTTATAGCAAAAGAAAGAAAAAACACCTTCCTATCAGAACTGGAGATGCCATCTCATCAAGATAAAAAGAGGAATACATCTTCAAATTTCTCAAAGCACGCCGTCAAAGATGAAGATGAACCAGCATGGGCACCTCTTCGTGACACATACATGCTTGGTTCTAAATTGAAGGACTGGGACAAAATGAAGGTAATGTCTCCTCATTGA - >Zm00001eb298370_T002
ATGGCCGCCTCTCCCCAGACTCTGTCAGCTCCCCCGCCCGCCGCCGCGGCCGTCCCGAACCTCGGCGGCAAGCGCAAGAGGCAACCCAAGGGCAAGAAGAATAAGAAGAACAAACTCGCGCGCTCCGACCAGGATGACTCCGTCCGCCGCCGCCGCAACAAGCCGAGCGCCAAGTTCCTCAAGCTGCTCCGCAAGCGGGCCCGCGACTACAACTCCGACGACGAGGATGAAGCTGGTGACGACCGGCAGCAGGAGCACCTGCCGAATCCTCAACGCCGCGTTGACGAGGACGACGACGAGGCCCTCTCTCACTCCGAGCCGGAGGAGGGCGAGGACGAGGACGAAGAGGAGGGGGCCTCCAGCTCGGCCGTCACGAGGTTCGAGCAAGGCTGCAGGGCGTTCCGCGTCGCCTTTCTCAAGATCATGGCCAAGAAACTCCCCGATGATCCCCTGGGTCCAATCCTGTCAGCGCACAAGACATTGGTAGCCGCCAAGTTAGCCGAGGAGGTGGAGGAGCACAAGCCCAAGCGGGAGGCTCGGAAGGAGAAGCGCGTGGCAGCAGAGAAGGGGCATGTCATACCTAAAGACCACTTGGACAGCAAAGAGAAGGAGCTCATCAAGGTTGCAACCAAGGGGGTTGTCAGGCTTTTCAATGCGGTGAGCAAGGCACAGAAATCTCGAAAAGATTTGAACCCATCAAGGACTAAAGATGCCACAGTTATAGCAAAAGAAAGAAAAAACACCTTCCTATCAGAACTGGAGATGCCATCTCATCAAGATAAAAAGAGGAATACATCTTCAAATTTCTCAAAGCACGCCGTCAAAGATGAAGATGAACCAGCATGGGCACCTCTTCGTGACACATACATGCTTGGTTCTAAATTGAAGGACTGGGACAAAATGAAGGTAATGTCTCCTCATTGA
Protein Sequence
- >Zm00001eb298370_P001
MAASPQTLSAPPPAAAAVPNLGGKRKRQPKGKKNKKNKLARSDQDDSVRRRRNKPSAKFLKLLRKRARDYNSDDEDEAGDDRQQEHLPNPQRRVDEDDDEALSHSEPEEGEDEDEEEGASSSAVTRFEQGCRAFRVAFLKIMAKKLPDDPLGPILSAHKTLVAAKLAEEVEEHKPKREARKEKRVAAEKGHVIPKDHLDSKEKELIKVATKGVVRLFNAVSKAQKSRKDLNPSRTKDATVIAKERKNTFLSELEMPSHQDKKRNTSSNFSKHAVKDEDEPAWAPLRDTYMLGSKLKDWDKMKVMSPH - >Zm00001eb298370_P002
MAASPQTLSAPPPAAAAVPNLGGKRKRQPKGKKNKKNKLARSDQDDSVRRRRNKPSAKFLKLLRKRARDYNSDDEDEAGDDRQQEHLPNPQRRVDEDDDEALSHSEPEEGEDEDEEEGASSSAVTRFEQGCRAFRVAFLKIMAKKLPDDPLGPILSAHKTLVAAKLAEEVEEHKPKREARKEKRVAAEKGHVIPKDHLDSKEKELIKVATKGVVRLFNAVSKAQKSRKDLNPSRTKDATVIAKERKNTFLSELEMPSHQDKKRNTSSNFSKHAVKDEDEPAWAPLRDTYMLGSKLKDWDKMKVMSPH