Information report for Zm00001eb257680
Gene Details
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Functional Descriptions
- By comparing the genomic locations of the 273 SNPs with those of the 281 DEGs, we identified seven candidate genes, of which GRMZM2G119769 encoded a sucrose non-fermenting 1 kinase interactor-like protein. GRMZM2G119769 was selected as the candidate gene because its homologs in other plants were related to organ length, auxin, or light response.
- Candidate gene association mapping revealed that natural variations in GRMZM2G119769 were related to phenotypic variations in maize mesocotyl length. Gene expression of GRMZM2G119769 was higher in deep-sowing tolerant inbred lines.
- These results suggest that GRMZM2G119769 is the most likely candidate gene. This study provides information on the deep-sowing tolerance of maize germplasms and identifies candidate genes, which would be useful for further research on maize deep-sowing tolerance.
Functional Keywords
- kinase , auxin , tolerance , auxin-response , protein-kinase , sucrose
Literature and News
Gene Resources
- NCBI ID: Zm00001eb257680
- UniProt accessions: A0A804PPC3
- AlphaFoldDB: A0A804PPC3
- EnsemblPlants: Zm00001eb257680_T002
- Gramene: Zm00001eb257680_T002
- InterPro: IPR038864
- PANTHER: PTHR37205 , PTHR37205:SF1
- OrthoDB: A0A804PPC3
Sequences
cDNA Sequence
- >Zm00001eb257680_T001
CGACCGGTACTGGCGTGAGGCCACAGAGGATCCGCGAGCATGGGTACGGGGAGGACTGGTTGTTGGTGTGGCGGGTAATGCATGCCCCCGAATCCGATCCGTCAACCGACGGGAGGAGTACGCCGTTTGCGCCATCGTTACGTCCACCAGAAGGAAAACCCAAGCCAACGACGACGGCACGGCCAAGAAACGGGGAGTGCCTTCCAAGGCGACCGCCCCCTCTCGCGCTCCATACGTCCATCCGTCGGCCCAGAGCCACAAGATAACGCAGCCAAGAACAAGAGACACCGCCGAGCGAGCGAGGCGGGGAGAAGCAGGTCCAGGACCAGGAGAAAGGAAAAGGAAGCCCAGCTCTCTCTAGCCTGGAGCCGAGAAGCCGAGGGGGCGAAGGAGCAGCAAGGCATGGAGGAGCCCGTTCCGGCTGATCCCCCCAGGATTTTCTGGAAGTCAAGGAGTTCAGGTTCAGCCAATGGCCGGAGCCTGCAACAAGAGCCTGACAAAGACGCTACCGAGGAAACTAACGAGCAGGCTCAAGAGGAACCCATGAAGACCGACGACGCAACGGACACAGCAGCAGCAGCAGCAGCTACAGCTGAGCCGTACCCGAAAGCTAACCTATCCGAGAAGCGGAAGGCTCTCTTCGAGCCTCTCGAGCCGATCAACGGCAAGCGCGGCGCTGCTGAGACGCTGCTCCCACCGCCGGACTTTGAGCCCGCGTCGTACCCCAAGGGGTGGCTGGTGGGCAAGAAACGCAAGCTCGTCAACGTAGACGTCGTGGAGAGCATGCGGAGGATTGCGATCCAGGAAATGAACAGAAAGGACCGTGAGATCAATGGGCTGAACGAGCAGCTAGAGGAAGACTCCCGCGTGCTGGAGCTTCTGCAGAAGCAGCTGGCTGACGAGCGCAGGAAGCGGACAGAGATCGAGAAGGAGAACTCCATGCTCCATGAGCAGGTCACCATGCTGATGAACATGCTCGACGAGAACGAGGGTTTCGACGAGGACGGAGAGGCCCCGCCGCCCGATTCCTTCGATTAAGCGTTGTTACAGTACTATATCCGTTTTCTTTTTCCCGTCAGTGTGAAATCATACGTCTCTAGGTGCTGGTTTCAGAGTATCCGAGAGATATGGGCTAGCTGTGTAGTAGGATTTCATTGGTGGTCGTATTCCATTACATGGCTTTGGCTTCTGTAGATAAAGGGTGCATTGCATGTCTGTTGTACTGTACTGTACCTACTCCTTTTCTAGGCTTCAAAAGTGTATGTGAGAAACTAGCAACATGTTATGTTTGAATCGAAGTGTATGTACATGTTACTTAAAATTCTTCCTTGCTATGCCAAAATTGCAGGAAATGTAAACAAGATGTGATTTCCC - >Zm00001eb257680_T002
CGACCGGTACTGGCGTGAGGCCACAGAGGATCCGCGAGCATGGGTACGGGGAGGACTGGTTGTTGGTGTGGCGGGTAATGCATGCCCCCGAATCCGATCCGTCAACCGACGGGAGGAGTACGCCGTTTGCGCCATCGTTACGTCCACCAGAAGGAAAACCCAAGCCAACGACGACGGCACGGCCAAGAAACGGGGAGTGCCTTCCAAGGCGACCGCCCCCTCTCGCGCTCCATACGTCCATCCGTCGGCCCAGAGCCACAAGATAACGCAGCCAAGAACAAGAGACACCGCCGAGCGAGCGAGGCGGGGAGAAGCAGGTCCAGGACCAGGAGAAAGGAAAAGGAAGCCCAGCTCTCTCTAGCCTGGAGCCGAGAAGCCGAGGGGGCGAAGGAGCAGCAAGGCATGGAGGAGCCCGTTCCGGCTGATCCCCCCAGGATTTTCTGGAAGTCAAGGAGTTCAGGTTCAGCCAATGGCCGGAGCCTGCAACAAGAGCCTGACAAAGACGCTACCGAGGAAACTAACGAGCAGGCTCAAGAGGAACCCATGAAGACCGACGACGCAACGGACACAGCAGCAGCAGCAGCAGCTACAGCTGAGCCGTACCCGAAAGCTAACCTATCCGAGAAGCGGAAGGCTCTCTTCGAGCCTCTCGAGCCGATCAACGGCAAGCGCGGCGCTGCTGAGACGCTGCTCCCACCGCCGGACTTTGAGCCCGCGTCGTACCCCAAGGGGTGGCTGGTGGGCAAGAAACGCAAGCTCGTCAACGTAGACGTCGTGGAGAGCATGCGGAGGATTGCGATCCAGGAAATGAACAGAAAGGACCGTGAGATCAATGGGCTGAACGAGCAGCTAGAGGAAGACTCCCGCGTGCTGGAGCTTCTGCAGAAGCAGCTGGCTGACGAGCGCAGGAAGCGGACAGAGATCGAGAAGGAGAACTCCATGCTCCATGAGCAGGTCACCATGCTGATGAACATGCTCGACGAGAACGAGGGTTTCGACGAGGACGGAGAGGCCCCGCCGCCCGATTCCTTCGATTAAGCGTTGTTACAGTACTATATCCGTTTTCTTTTTCCCGTCAGTGTGAAATCATACGTCTCTAGGTGCTGGTTTCAGAGTATCCGAGAGATATGGGCTAGCTGTGTAGTAGGATTTCATTGGTGGTCGTATTCCATTACATGGCTTTGGCTTCTGTAGATAAAGGGTGCATTGCATGTCTGTTGTACTGTACTGTACCTACTCCTTTTCTAGGCTTCAAAAGTGTATGTGAGAAACTAGCAACATGTTATGTTTGAATCGAAGTGTATGTACATGTTACTTAAAATTCTTCCTTGCTATGCCAAAATTGCAGGAAATGTAAACAAGATGTGATTTCCC
CDS Sequence
- >Zm00001eb257680_T001
ATGGAGGAGCCCGTTCCGGCTGATCCCCCCAGGATTTTCTGGAAGTCAAGGAGTTCAGGTTCAGCCAATGGCCGGAGCCTGCAACAAGAGCCTGACAAAGACGCTACCGAGGAAACTAACGAGCAGGCTCAAGAGGAACCCATGAAGACCGACGACGCAACGGACACAGCAGCAGCAGCAGCAGCTACAGCTGAGCCGTACCCGAAAGCTAACCTATCCGAGAAGCGGAAGGCTCTCTTCGAGCCTCTCGAGCCGATCAACGGCAAGCGCGGCGCTGCTGAGACGCTGCTCCCACCGCCGGACTTTGAGCCCGCGTCGTACCCCAAGGGGTGGCTGGTGGGCAAGAAACGCAAGCTCGTCAACGTAGACGTCGTGGAGAGCATGCGGAGGATTGCGATCCAGGAAATGAACAGAAAGGACCGTGAGATCAATGGGCTGAACGAGCAGCTAGAGGAAGACTCCCGCGTGCTGGAGCTTCTGCAGAAGCAGCTGGCTGACGAGCGCAGGAAGCGGACAGAGATCGAGAAGGAGAACTCCATGCTCCATGAGCAGGTCACCATGCTGATGAACATGCTCGACGAGAACGAGGGTTTCGACGAGGACGGAGAGGCCCCGCCGCCCGATTCCTTCGATTAA - >Zm00001eb257680_T002
ATGGAGGAGCCCGTTCCGGCTGATCCCCCCAGGATTTTCTGGAAGTCAAGGAGTTCAGGTTCAGCCAATGGCCGGAGCCTGCAACAAGAGCCTGACAAAGACGCTACCGAGGAAACTAACGAGCAGGCTCAAGAGGAACCCATGAAGACCGACGACGCAACGGACACAGCAGCAGCAGCAGCAGCTACAGCTGAGCCGTACCCGAAAGCTAACCTATCCGAGAAGCGGAAGGCTCTCTTCGAGCCTCTCGAGCCGATCAACGGCAAGCGCGGCGCTGCTGAGACGCTGCTCCCACCGCCGGACTTTGAGCCCGCGTCGTACCCCAAGGGGTGGCTGGTGGGCAAGAAACGCAAGCTCGTCAACGTAGACGTCGTGGAGAGCATGCGGAGGATTGCGATCCAGGAAATGAACAGAAAGGACCGTGAGATCAATGGGCTGAACGAGCAGCTAGAGGAAGACTCCCGCGTGCTGGAGCTTCTGCAGAAGCAGCTGGCTGACGAGCGCAGGAAGCGGACAGAGATCGAGAAGGAGAACTCCATGCTCCATGAGCAGGTCACCATGCTGATGAACATGCTCGACGAGAACGAGGGTTTCGACGAGGACGGAGAGGCCCCGCCGCCCGATTCCTTCGATTAA
Protein Sequence
- >Zm00001eb257680_P001
MEEPVPADPPRIFWKSRSSGSANGRSLQQEPDKDATEETNEQAQEEPMKTDDATDTAAAAAATAEPYPKANLSEKRKALFEPLEPINGKRGAAETLLPPPDFEPASYPKGWLVGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERRKRTEIEKENSMLHEQVTMLMNMLDENEGFDEDGEAPPPDSFD - >Zm00001eb257680_P002
MEEPVPADPPRIFWKSRSSGSANGRSLQQEPDKDATEETNEQAQEEPMKTDDATDTAAAAAATAEPYPKANLSEKRKALFEPLEPINGKRGAAETLLPPPDFEPASYPKGWLVGKKRKLVNVDVVESMRRIAIQEMNRKDREINGLNEQLEEDSRVLELLQKQLADERRKRTEIEKENSMLHEQVTMLMNMLDENEGFDEDGEAPPPDSFD