Information report for PCW1
Gene Details
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Functional Descriptions
- Maize PPR-E proteins mediate RNA C-to-U editing in mitochondria by recruiting the trans deaminase PCW1|ppr199.
- Report that pentatricopeptide repeat (PPR)-E subclass proteins carry out RNA C-to-U editing by recruiting the trans deaminase PPR motifs, coiled-coil, and DYW domain-containing protein 1 (PCW1|ppr199) in maize (Zea mays) mitochondria
- Loss-of-function of bZIP and coiled-coil domain-containing PPR 1 (bCCP1) or PCW1|ppr199 arrests seed development in maize. bCCP1 encodes a bZIP and coiled-coil domain-containing PPR protein, and PCW1|ppr199 encodes an atypical PPR–DYW protein.
- The PCW1|ppr199-mediated editing sites are exclusively associated with PPR-E proteins. bCCP1 interacts with PCW1|ppr199 and the PPR-E protein Empty pericarp7 (EMP7).
- These results suggest that PPR-E proteins function in RNA editing by recruiting the trans deaminase PCW1|ppr199 and bCCP1, and MORF1/8 assist this recruitment through protein–protein interactions.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC103651234
- UniProt accessions: A0A1D6ND84
- EMBL: CM007649
- EnsemblPlants: Zm00001eb153890_T001
- Gramene: Zm00001eb153890_T001
- KEGG: zma:103651234
- OMA: QFKQTGD
- ExpressionAtlas: Zm00001eb153890
- InterPro: IPR002885 , IPR011990 , IPR032867 , IPR046960
- PANTHER: PTHR47926 , PTHR47926:SF388
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: A0A1D6ND84
- SMR: A0A1D6ND84
Sequences
cDNA Sequence
- >Zm00001eb153890_T001
GGCTGGTCCCATATGCCTCAGCCCAGGCGTCAGATACTCGATATGCTGATCACGCCACAGCTCTAGCCTGCACAGAAAACAACTCGACAACAAAAGGCTGATGAGGAGACAGTGGACCCACACCCTAATATCAACTCACATTCAAGTGTTTGTGTCTAAGACGCTATCCAACAATACATAACTAGCAGTACTAAGCTTCTGTACGCACCAAATCAGAAACCCTGCACTGAACTATCTGGTGCCACGGGCAAAGTTATCAGAGGACTAGCTATTTTTCAAGCTACAGCGTATCAAATACTCCAATATCCAAACTAAATCCATGCGTTGAGACCCGCCAAGCACTGCCGGCTGTCGGCAGCCAGGGGATATACTCAAATAGAAGTGAGAAAACTAGCGTGTGCTTAGGGATGCTCACATGATGGATTTCGTGTTGGGCGCGGCCCCGAAGAGGGAGCGGTAGATGTCGCCAACCCTGGCCTCCACCTTCATCTGCTCCACCTGCGTCACCGTGAGCCTCGGTAGGTCGGGATCCGCCGCCGCTGCCGGGTCGTCTCCGGTGGGCGGCGTCGACTGCGGGGAGGGGTCCATGGACGCAGCGGCCTGGTGTGGAGTCGGAGGCGGAGCGCCGCCGCCTGGCTGCGCTCTCGAGTGCTGCGGCCTGCGGTTTCGGCAGTGCTGCCCTTGCTGTTGCGGCCTTGCGGGGTCCGGTTCTCGGCTGCTTCGGTGTTGTGGTGAGACGGGTGAGCGGAGCAATCTTACGATGCCGCGAGACGGGTGAGCCCAACCAATAATTTCATTGAGCCGGCCCAATCACACTGACCAGAGCTATGTTATCCAACCCGATACCACACCAAACCCACGACGGCACCGCAGCAACCCATTCCATAGCCACGCGAGTGACGCGACGCGACGCACGGCCTGCCTGAGGCAGCGCATCTGCTTGGCGGCCGGGAGCAGCCGCCGCTTCGCCTTCGTGAGGGTTTAAGCGACGAAGAGAAAGGGGAGGAAGCGAGCCCCCAGGGAGGTGCAGAGGGAGAGGGTGGGAGATGGCTGCAATGGTTGGAGCGCGTAGGGCGCTCTTGGCCGCTCGGTTCTCTCCTCGCGGCACCATCGCGGCGTCGGCCGCGCCAGCTCCCCTCTACCGGCCCATGGATTCGCCACTCAGGCTTCCAGCTGAAAGAGTTTGTCTACAGTCTTGGGTTCCACATCGAGGGGCTGGTACCTTTGCATCTGAAAGGACTGATGAAGATTATCAGCGTGAGTGGGGACAAAACAAAGCAGGTAGCTACACTGACTCCCGTTGGAACGGCTCTAATCTCCAACTTCAGAGAGATGTCACTTCAGCTGGTTCCACAACAGGTACTCACAAAAATAAGGGTGTGGATGGTGTTGGTGGCAGTTCTGAGCAACATTACAGAAGTGGTGGATCATATGGCTTTCAAAACAATCATCAGCCATATACTGGTACAAGAGCGAATAATGAGAGATACAATGCATCACAACCTTATAGAGGTAGTGGTCCATACAGCCAGCAAGGCCTTGATGGACATTTTTCAAATGATCGTCAACAGTACAATGGCACAGAAGCTAATAGTACATATAGCTCTGGATACTACACCCAAAGTAAGCAGAAGATTTATGAAGGAGAGGGAGCTAATAATGGGCAGTATGGATATGGTCCTTCAGGACAACCATGTCCGAACCCAGTTGGAAATAGCCAGCGAGTTCAGAAACAGCAATATGTTGATCATAGATCTGGGGGAAGTTATCCAGATAGATCTGGGCATCATCCCTCTCAATATGTAAATCCAACTCATTCCCGTAAGGAGCATGTTGCAGGGTTTCAGCAAGGCAACAATAGTAATTTTGGATATAATGCTTCGCAGGCATATCAAAGCCCTTATTTCACTAGGCAGGCTGATACACATAGTACTTCTCAAGGATATTCCATGTACCTAAATACAGATGTGCAACGCCTCTCTCATGGAGTTCATCAAGAAAAACATTCACATGCACAATCTGCTGGATCATTTGGGAACCATGTAAATAGTGCACCTCATGAATATGGCAAATATCATCAGTCACTACAAGGCAACCCTTCAAATGTTGGATCGCCTTACGAAGTACCTAGTGAAGCTGGCAGCAAACACAAATGTACTGTTGAAGAACTGGAGAAGTTTTGTGATGATGGCAATGTAAAAGAAGCTCTGGAAGTTTTGGCTATGCTAAAGGAAAACAGAATTGTGCTACATGCTCCTCAGTACTTCAGATTGATGCAAGCATGTGGTGATGCAACTGCCCTTTCAGAAGCAAGATTAATACATAGTCAAATATCTGAATCATCACTTACTGTTGACACAGATTTTCAAAACAAAATTATGGAGATGTATGCTAGGTGTGGTTCTATGGAAGATGCAAAGAAGATTTTCAGTTCTATGGATCATCATAATTTGACTTCTTGGAACACTATGATCTCAGGTTTTGTGCACAATGTTCTTGGTGAAGAAGCAATAGATTTTTTTGAACGGTTTAAGCAGACAGGGGACAAGCCAGATCATGGCATGTTCAGACATGTTTTCTTGGCATGTGGAATTTTGGGATCTGTTAATGAAGGAATGTTGCATTTTGAATCCATGCAGAAAGATTTTGGCATACATCCCACTACAGAGCATTATGCAAGCATTGTTACTATGCTTGGACAGTCTGGCTACATTGTCGAGGCTTATGAATTCGTGGAACGGATGCCTGTGGAACCAAGCATTGAGGTATGGGAAAATTTGATGAACATGTGTCGACTTAATGGCTTTTTAGAGCTTGGAGATCGTTGTGCTCAGATCATAGAGTGCTTGGATTCTTCTAGGCTGAATGAACAGTCTAAAATGGGTCTGTTCCCTGTCGATGTGTCAGATCTTGCAAAGGAAAAGGAAAGGAAAAAGGCAAGTGTCGCCGAAGCTCGGAGCAAGGTCCATGAATACAGAGCTGGCGACCGATCTCACCCTGACACTCCTAAGATCTATGAAGAGCTGAGGTATTTGTTGGCTCACATGAAGGAAGCTGGGTATATTGCTGACACTCGATTTGTTCTTCACGATGTTGATCAAGAAACCAAAGAGGATGCTTTACTGGCTCACAGTGAGAGGCTGGCTATCAGTTACGGTCTTATAACAAGTGCTCCCCGCTCACCTATTCGGGTTATAAAGAATCTTCGATCCTGTGGGGATTGTCACACGGCTTTCAAGATAATCTCAAAACTTGTTGGACGTCAGATCATTGCAAGGGATGCAAAGAGGTTCCACCACTTCGAAAATGGTGTGTGTTCTTGCAAAGACTACTGGTAAACAAGATGAAAGAAAGTCCACATCTTGGTCAATTTTTATTGGCACAAGACCGCTATAGGTTGTTTATGTGCTGAAGGTAGGCTGATGCCTATCTAACATTTAGTTAGCTAATAGTTTCATGTGAGAGACATGCTGTATGATGTCGTCAGTGAGAAACAGCCAAACAGGTCCTAAGCAGCTCTGGTGTTCTATTTTGCAGCTCATACGTTAAGCCTGAGCTTTTACTTTAACAACTGTTGTCTCTGATTTGTTACTTGCCACCAAAATAAAACAGTAGAATGTAACTGGGTAGTGGTCCCTTGGCATGTAAACTTTGATTCAGCTGATTACAAAGCTTTCTGACTGCATTCTGGATCCATTGCTTATATAGCTAGCAGGAGCCTTTTCTTGTGCC
CDS Sequence
- >Zm00001eb153890_T001
ATGGCTGCAATGGTTGGAGCGCGTAGGGCGCTCTTGGCCGCTCGGTTCTCTCCTCGCGGCACCATCGCGGCGTCGGCCGCGCCAGCTCCCCTCTACCGGCCCATGGATTCGCCACTCAGGCTTCCAGCTGAAAGAGTTTGTCTACAGTCTTGGGTTCCACATCGAGGGGCTGGTACCTTTGCATCTGAAAGGACTGATGAAGATTATCAGCGTGAGTGGGGACAAAACAAAGCAGGTAGCTACACTGACTCCCGTTGGAACGGCTCTAATCTCCAACTTCAGAGAGATGTCACTTCAGCTGGTTCCACAACAGGTACTCACAAAAATAAGGGTGTGGATGGTGTTGGTGGCAGTTCTGAGCAACATTACAGAAGTGGTGGATCATATGGCTTTCAAAACAATCATCAGCCATATACTGGTACAAGAGCGAATAATGAGAGATACAATGCATCACAACCTTATAGAGGTAGTGGTCCATACAGCCAGCAAGGCCTTGATGGACATTTTTCAAATGATCGTCAACAGTACAATGGCACAGAAGCTAATAGTACATATAGCTCTGGATACTACACCCAAAGTAAGCAGAAGATTTATGAAGGAGAGGGAGCTAATAATGGGCAGTATGGATATGGTCCTTCAGGACAACCATGTCCGAACCCAGTTGGAAATAGCCAGCGAGTTCAGAAACAGCAATATGTTGATCATAGATCTGGGGGAAGTTATCCAGATAGATCTGGGCATCATCCCTCTCAATATGTAAATCCAACTCATTCCCGTAAGGAGCATGTTGCAGGGTTTCAGCAAGGCAACAATAGTAATTTTGGATATAATGCTTCGCAGGCATATCAAAGCCCTTATTTCACTAGGCAGGCTGATACACATAGTACTTCTCAAGGATATTCCATGTACCTAAATACAGATGTGCAACGCCTCTCTCATGGAGTTCATCAAGAAAAACATTCACATGCACAATCTGCTGGATCATTTGGGAACCATGTAAATAGTGCACCTCATGAATATGGCAAATATCATCAGTCACTACAAGGCAACCCTTCAAATGTTGGATCGCCTTACGAAGTACCTAGTGAAGCTGGCAGCAAACACAAATGTACTGTTGAAGAACTGGAGAAGTTTTGTGATGATGGCAATGTAAAAGAAGCTCTGGAAGTTTTGGCTATGCTAAAGGAAAACAGAATTGTGCTACATGCTCCTCAGTACTTCAGATTGATGCAAGCATGTGGTGATGCAACTGCCCTTTCAGAAGCAAGATTAATACATAGTCAAATATCTGAATCATCACTTACTGTTGACACAGATTTTCAAAACAAAATTATGGAGATGTATGCTAGGTGTGGTTCTATGGAAGATGCAAAGAAGATTTTCAGTTCTATGGATCATCATAATTTGACTTCTTGGAACACTATGATCTCAGGTTTTGTGCACAATGTTCTTGGTGAAGAAGCAATAGATTTTTTTGAACGGTTTAAGCAGACAGGGGACAAGCCAGATCATGGCATGTTCAGACATGTTTTCTTGGCATGTGGAATTTTGGGATCTGTTAATGAAGGAATGTTGCATTTTGAATCCATGCAGAAAGATTTTGGCATACATCCCACTACAGAGCATTATGCAAGCATTGTTACTATGCTTGGACAGTCTGGCTACATTGTCGAGGCTTATGAATTCGTGGAACGGATGCCTGTGGAACCAAGCATTGAGGTATGGGAAAATTTGATGAACATGTGTCGACTTAATGGCTTTTTAGAGCTTGGAGATCGTTGTGCTCAGATCATAGAGTGCTTGGATTCTTCTAGGCTGAATGAACAGTCTAAAATGGGTCTGTTCCCTGTCGATGTGTCAGATCTTGCAAAGGAAAAGGAAAGGAAAAAGGCAAGTGTCGCCGAAGCTCGGAGCAAGGTCCATGAATACAGAGCTGGCGACCGATCTCACCCTGACACTCCTAAGATCTATGAAGAGCTGAGGTATTTGTTGGCTCACATGAAGGAAGCTGGGTATATTGCTGACACTCGATTTGTTCTTCACGATGTTGATCAAGAAACCAAAGAGGATGCTTTACTGGCTCACAGTGAGAGGCTGGCTATCAGTTACGGTCTTATAACAAGTGCTCCCCGCTCACCTATTCGGGTTATAAAGAATCTTCGATCCTGTGGGGATTGTCACACGGCTTTCAAGATAATCTCAAAACTTGTTGGACGTCAGATCATTGCAAGGGATGCAAAGAGGTTCCACCACTTCGAAAATGGTGTGTGTTCTTGCAAAGACTACTGGTAA
Protein Sequence
- >Zm00001eb153890_P001
MAAMVGARRALLAARFSPRGTIAASAAPAPLYRPMDSPLRLPAERVCLQSWVPHRGAGTFASERTDEDYQREWGQNKAGSYTDSRWNGSNLQLQRDVTSAGSTTGTHKNKGVDGVGGSSEQHYRSGGSYGFQNNHQPYTGTRANNERYNASQPYRGSGPYSQQGLDGHFSNDRQQYNGTEANSTYSSGYYTQSKQKIYEGEGANNGQYGYGPSGQPCPNPVGNSQRVQKQQYVDHRSGGSYPDRSGHHPSQYVNPTHSRKEHVAGFQQGNNSNFGYNASQAYQSPYFTRQADTHSTSQGYSMYLNTDVQRLSHGVHQEKHSHAQSAGSFGNHVNSAPHEYGKYHQSLQGNPSNVGSPYEVPSEAGSKHKCTVEELEKFCDDGNVKEALEVLAMLKENRIVLHAPQYFRLMQACGDATALSEARLIHSQISESSLTVDTDFQNKIMEMYARCGSMEDAKKIFSSMDHHNLTSWNTMISGFVHNVLGEEAIDFFERFKQTGDKPDHGMFRHVFLACGILGSVNEGMLHFESMQKDFGIHPTTEHYASIVTMLGQSGYIVEAYEFVERMPVEPSIEVWENLMNMCRLNGFLELGDRCAQIIECLDSSRLNEQSKMGLFPVDVSDLAKEKERKKASVAEARSKVHEYRAGDRSHPDTPKIYEELRYLLAHMKEAGYIADTRFVLHDVDQETKEDALLAHSERLAISYGLITSAPRSPIRVIKNLRSCGDCHTAFKIISKLVGRQIIARDAKRFHHFENGVCSCKDYW