Information report for ZmNF-YC1
Gene Details
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Functional Descriptions
- The upstream regulator ZmNF-YC1|ca5p11 of ZmAPRG by yeast one hybrid (Y1H) assay, and found it was a low inorganic phosphorus (Pi)-inducible gene.
- Overexpression of ZmNF-YC1|ca5p11 improved low P tolerance, whereas knockout of ZmNF-YC1|ca5p11 decreased low P tolerance in maize.
- Bimolecular fluorescence complementation (BiFC), yeast two hybrid (Y2H) assay, and yeast three hybrid (Y3H) assay further showed that ZmNF-YC1|ca5p11 can interact with ZmNF-YB14, and recruit ZmNF-YA4/10 to form NF-Y complexes.
- Our research revealed a low P tolerance mechanism of the ZmNF-YC1|ca5p11–ZmAPRG pathway.
Functional Keywords
- tolerance , phosphorus , pi
Literature and News
Gene Resources
- NCBI ID: LOC100281601
- UniProt accessions: A0A317YFQ9 , B6SWV5
- EMBL: CM007647 , EU957220
- EnsemblPlants: Zm00001eb010770_T002
- Gramene: Zm00001eb010770_T002
- KEGG: zma:100281601
- OMA: WQTSEEH
- ExpressionAtlas: Zm00001eb010770
- InterPro: IPR007125 , IPR009072 , IPR050568
- PANTHER: PTHR10252 , PTHR10252:SF39
- SUPFAM: SSF47113
- Gene3D: 1.10.20.10
- OrthoDB: B6SWV5
- SMR: B6SWV5
- CDD: cd22908
Homologs
- Brachypodium distachyon: BRADI_1g67980v3, Bradi1g67980.4.p, Bradi1g67980.3.p, Bradi1g67980.2.p
- Saccharum spontaneum: Sspon.01G0037270-1B
- Setaria italica: Seita.2G085600.1.p, SETIT_037200mg
- Setaria viridis: Sevir.2G089200.1.p, SEVIR_2G089200v2, SEVIR_9G471700v2
Sequences
cDNA Sequence
- >Zm00001eb010770_T001
GATCCAACCACCCAACGCCCCGGCCCCTTCTCATAAGAAAAAAAATGAAGCTTGCCATTTCGCTCAGGGCCCTGCAGCGGCGGCAGCTGGCGGGAGAGAGGCTTGGGACTGGGCCGCCCGGCCGCGAGGAATAAACTCACTCCTGTCTTCATACGTATCCATAGCCGGCAGGCGGCAGTACCTGTATGTGGTTTTAGCTATACGCGACCTCAGTTCGGGCGCAAGCTACAACCCCGACCAGGCGAGAAGAAGCATCGATAGTGTGACGAGCTAACCCACCACCAGCAACGTAATCCAAATCCATGGACAACCAGCCGCTGCCCTACTCCACAGGCCAGCCCCCTGCCCCCGGAGGAGCCCCGGTGGCGGGCATGCCTGGCGCGGCCGGCCTCCCACCCGTGCCGCACCACCACCTGCTCCAGCAGCAGCAGGCCCAGCTGCAGGCGTTCTGGGCGTACCAGCGCCAGGAGGCGGAGCGCGCGTCCGCGTCGGACTTCAAGAACCACCAGCTGCCTCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCTCCGCCGAGGCGCCCGTGCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACTATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTGCAGCGCAACGACGTCGCCGCGGCCATCGCGCGCACCGACGTCTTCGATTTCCTCGTCGACATCGTGCCCCGCGAGGAGGCCAAGGAGGAGCCCGGCAGCGCCCTCGGCTTCGCGGCCTGGCATGTTCCGGCCTGGGACCCGGCCTGGCAGCAAGGGGCAGCGGATGTCGATCAGAGCGGCAGCTTCAGCGAGGAAGGACAAGGGTTTGGAGCAGGCCATGGCGGCGCCGCTAGCTTCCCTCCTGCGCCTCCGACCTCCGAGTGATCGATCGGCGCGTCTCTTGGTCCTGGCCTCCTGGCTTAGCTACATGTGCATGATGTCAATCGTTCAATGTGCCATGCTGTGTATACTCTACAGCAAACGTGGTAATGGAGCTGCTATGCATACAGAACGAATAAGGCGTGACGTGTGAGACCGTAAGAGTACGTAGTACTAATATGTAGATGCACGTGACGTGCCAATTAATCAAAGATTAACATGCAGTTAATTAATTAGTCCTCCTACCGAGGTGCCTCAAATCTATATTTTTTTTCCATTTATATATCGAGTTCACACAATCCATAAGAATACAAACTTCGGCAAGGTTTAGGATTTGGGGAACTTGAGGCTTGGGGAGTTAGGGTTCCATGGCTACCGGTCGTGATGACACATGGGGCATCAAGGTAGATTAAGGGTCTGTTTGTTTGAACTTTTAGAGTTTTTTTGAAAAGTTGTTGTTGAACTTTTGATACTGAGAAGCCAATTCAACGATGTTATTAGTTCCTAAATTAAGGAAGC - >Zm00001eb010770_T002
GATCCAACCACCCAACGCCCCGGCCCCTTCTCATAAGAAAAAAAATGAAGCTTGCCATTTCGCTCAGGGCCCTGCAGCGGCGGCAGCTGGCGGGAGAGAGGCTTGGGACTGGGCCGCCCGGCCGCGAGGAATAAACTCACTCCTGTCTTCATACGTATCCATAGCCGGCAGGCGGCAGTACCTGTATGTGGTTTTAGCTATACGCGACCTCAGTTCGGGCGCAAGCTACAACCCCGACCAGGCGAGAAGAAGCATCGATAGTGTGACGAGCTAACCCACCACCAGCAACGTAATCCAAATCCATGGACAACCAGCCGCTGCCCTACTCCACAGGCCAGCCCCCTGCCCCCGGAGGAGCCCCGGTGGCGGGCATGCCTGGCGCGGCCGGCCTCCCACCCGTGCCGCACCACCACCTGCTCCAGCAGCAGCAGGCCCAGCTGCAGGCGTTCTGGGCGTACCAGCGCCAGGAGGCGGAGCGCGCGTCCGCGTCGGACTTCAAGAACCACCAGCTGCCTCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCTCCGCCGAGGCGCCCGTGCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACTATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTGCAGCGCAACGACGTCGCCGCGGCCATCGCGCGCACCGACGTCTTCGATTTCCTCGTCGACATCGTGCCCCGCGAGGAGGCCAAGGAGGAGCCCGGCAGCGCCCTCGGCTTCGCGGCCTGGCATGTTCCGGCCTGGGACCCGGCCTGGCAGCAAGGGGCAGCGGATGTCGATCAGAGCGGCAGCTTCAGCGAGGAAGGACAAGGGTTTGGAGCAGGCCATGGCGGCGCCGCTAGCTTCCCTCCTGCGCCTCCGACCTCCGAGTGATCGATCGGCGCGTCTCTTGGTCCTGGCCTCCTGGCTTAGCTACATGTGCATGATGTCAATCGTTCAATGTGCCATGCTGTGTATACTCTACAGCAAACGTGGTAATGGAGCTGCTATGCATACAGAACGAATAAGGCGTGACGTGTGAGACCGTAAGAGTACGTAGTACTAATATGTAGATGCACGTGACGTGCCAATTAATCAAAGATTAACATGCAGTTAATTAATTAGTCCTCCTACCGAGGTGCCTCAAATCTATATTTTTTTTCCATTTATATATCGAGTTCACACAATCCATAAGAATACAAACTTCGGCAAGGTTTAGGATTTGGGGAACTTGAGGCTTGGGGAGTTAGGGTTCCATGGCTACCGGTCGTGATGACACATGGGGCATCAAGGTAGATTAAGGGTCTGTTTGTTTGAACTTTTAGAGTTTTTTTGAAAAGTTGTTGTTGAACTTTTGATACTGAGAAGCCAATTCAACGATGTTATTAGTTCCTAAATTAAGGAAGC
CDS Sequence
- >Zm00001eb010770_T001
ATGGACAACCAGCCGCTGCCCTACTCCACAGGCCAGCCCCCTGCCCCCGGAGGAGCCCCGGTGGCGGGCATGCCTGGCGCGGCCGGCCTCCCACCCGTGCCGCACCACCACCTGCTCCAGCAGCAGCAGGCCCAGCTGCAGGCGTTCTGGGCGTACCAGCGCCAGGAGGCGGAGCGCGCGTCCGCGTCGGACTTCAAGAACCACCAGCTGCCTCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCTCCGCCGAGGCGCCCGTGCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACTATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTGCAGCGCAACGACGTCGCCGCGGCCATCGCGCGCACCGACGTCTTCGATTTCCTCGTCGACATCGTGCCCCGCGAGGAGGCCAAGGAGGAGCCCGGCAGCGCCCTCGGCTTCGCGGCCTGGCATGTTCCGGCCTGGGACCCGGCCTGGCAGCAAGGGGCAGCGGATGTCGATCAGAGCGGCAGCTTCAGCGAGGAAGGACAAGGGTTTGGAGCAGGCCATGGCGGCGCCGCTAGCTTCCCTCCTGCGCCTCCGACCTCCGAGTGA - >Zm00001eb010770_T002
ATGGACAACCAGCCGCTGCCCTACTCCACAGGCCAGCCCCCTGCCCCCGGAGGAGCCCCGGTGGCGGGCATGCCTGGCGCGGCCGGCCTCCCACCCGTGCCGCACCACCACCTGCTCCAGCAGCAGCAGGCCCAGCTGCAGGCGTTCTGGGCGTACCAGCGCCAGGAGGCGGAGCGCGCGTCCGCGTCGGACTTCAAGAACCACCAGCTGCCTCTGGCCCGGATCAAGAAGATCATGAAGGCCGACGAGGACGTGCGCATGATCTCCGCCGAGGCGCCCGTGCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACTATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTGCAGCGCAACGACGTCGCCGCGGCCATCGCGCGCACCGACGTCTTCGATTTCCTCGTCGACATCGTGCCCCGCGAGGAGGCCAAGGAGGAGCCCGGCAGCGCCCTCGGCTTCGCGGCCTGGCATGTTCCGGCCTGGGACCCGGCCTGGCAGCAAGGGGCAGCGGATGTCGATCAGAGCGGCAGCTTCAGCGAGGAAGGACAAGGGTTTGGAGCAGGCCATGGCGGCGCCGCTAGCTTCCCTCCTGCGCCTCCGACCTCCGAGTGA
Protein Sequence
- >Zm00001eb010770_P001
MDNQPLPYSTGQPPAPGGAPVAGMPGAAGLPPVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAKEEPGSALGFAAWHVPAWDPAWQQGAADVDQSGSFSEEGQGFGAGHGGAASFPPAPPTSE - >Zm00001eb010770_P002
MDNQPLPYSTGQPPAPGGAPVAGMPGAAGLPPVPHHHLLQQQQAQLQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAKEEPGSALGFAAWHVPAWDPAWQQGAADVDQSGSFSEEGQGFGAGHGGAASFPPAPPTSE