Information report for YS3;tom1
Gene Details
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Functional Descriptions
- Yellow stripe 1 (ys1) and YS3 are recessive mutants of maize (Zea mays L.) that result in symptoms typical of Fe deficiency, i.e., interveinal chlorosis of the leaves.
- The homozygous seeds of Yellow stripe 1 (ys1) and YS3 mutant plants were used to identify the genes responsible for the ys1 and YS3 phenotypes, and to extend our understanding of Fe homeostasis in maize.
- In agreement with previous reports, the expression level of YS1 was decreased in the ys1 mutant. Moreover, we identified that the expression level of a homolog of tom1 in maize (Zmtom1) was significantly decreased in the ys3 mutant.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC103650434
- UniProt accessions: A0A804N430
- AlphaFoldDB: A0A804N430
- EnsemblPlants: Zm00001eb133440_T001
- Gramene: Zm00001eb133440_T001
- InterPro: IPR011701 , IPR020846 , IPR036259
- PANTHER: PTHR23504 , PTHR23504:SF30
- SUPFAM: SSF103473
- PROSITE: PS50850
- Gene3D: 1.20.1250.20
- CDD: cd17330
Sequences
cDNA Sequence
- >Zm00001eb133440_T002
TGTGTGTGTGCTGCTAAACCACCAAGGTCGAAGTATCCCTTACTGCTTGGTATACGTACGAGTAGCGTGTCCCTGTCCATTGTACGTACGTCGATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGACAGCTGCTCGAACCCAAGCAATGGAATAATGATGGATTAGCAAAACATATGTGCCCAAAAATACGTTTTTGAGTGGCATACAACGGAATTATGTAAAAGCTGTCAAGAAAAAGTAGCTACAATGATTGTGTCCGCTATCTTTACATCTCCTTACATTGAAGTTTTAATTTGAGCA - >Zm00001eb133440_T001
TGTGTGTGTGCTGCTAAACCACCAAGGTCGAAGTATCCCTTACTGCTTGGTATACGTACGAGTAGCGTGTCCCTGTCCATTGTACGTACGTCGATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGACAGCTGCTCGAACCCAAGCAATGGAATAATGATGGATTAGCAAAACATATGTGCCCAAAAATACGTTTTTGAGTGGCATACAACGGAATTATGTAAAAGCTGTCAAGAAAAAGTAGCTACAATGATTGTGTCCGCTATCTTTACATCTCCTTACATTGAAGTTTTAATTTGAGCA
CDS Sequence
- >Zm00001eb133440_T002
ATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGA - >Zm00001eb133440_T001
ATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGA
Protein Sequence
- >Zm00001eb133440_P002
MAEEVPTTPPPAPLYVDGCPGCAMDRKKAANKGIPYKEFFFVAVTTIASALPISSLFPFLYFMIEDLHVAKKEQDIGLYAGFLGASYFVGRFLVSFFWGVVADRVGRKPIIIFSVASVVVFNTLFGLSVQYWMAITTRLLLGALNGMLAPIKAYSIEICRPEHHALGLSVVSTAWGLGLIVGPSIGGYLAQPARQYPNVFSEESIFGRFPYLLPCLSISIFSAVVLVSCIWLPETLHKHKNIDNEVEMSGHSRTPQTEDVDAGKSLYKNWPLMSSIIAYCVFTLHDTAYTEILSLWTVSDKKYGGLGFSSKGVGQLLAIAGLGLIVYQMFIYRPVHRYLGSVNSCRAASALSIPLIAAFPFMTHLSGSKLGLALYFATILKAALGITILTGTSLLQNYAVPQHQRGAANGVAATAMSFFKAIGPAGAGALFSWTQKRQDAAFFPGDHMLFFILNLVQCIGLVLTLKPFLAVPKHYK - >Zm00001eb133440_P001
MAEEVPTTPPPAPLYVDGCPGCAMDRKKAANKGIPYKEFFFVAVTTIASALPISSLFPFLYFMIEDLHVAKKEQDIGLYAGFLGASYFVGRFLVSFFWGVVADRVGRKPIIIFSVASVVVFNTLFGLSVQYWMAITTRLLLGALNGMLAPIKAYSIEICRPEHHALGLSVVSTAWGLGLIVGPSIGGYLAQPARQYPNVFSEESIFGRFPYLLPCLSISIFSAVVLVSCIWLPETLHKHKNIDNEVEMSGHSRTPQTEDVDAGKSLYKNWPLMSSIIAYCVFTLHDTAYTEILSLWTVSDKKYGGLGFSSKGVGQLLAIAGLGLIVYQMFIYRPVHRYLGSVNSCRAASALSIPLIAAFPFMTHLSGSKLGLALYFATILKAALGITILTGTSLLQNYAVPQHQRGAANGVAATAMSFFKAIGPAGAGALFSWTQKRQDAAFFPGDHMLFFILNLVQCIGLVLTLKPFLAVPKHYK