Gene Details:
- Gene ID: Zm00001eb133440
- Gene Symbol: YS3 tom1
- Gene Name: yellow stripe3
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- Yellow stripe 1 (ys1) and YS3 are recessive mutants of maize (Zea mays L.) that result in symptoms typical of Fe deficiency, i.e., interveinal chlorosis of the leaves.
- The homozygous seeds of Yellow stripe 1 (ys1) and YS3 mutant plants were used to identify the genes responsible for the ys1 and YS3 phenotypes, and to extend our understanding of Fe homeostasis in maize.
- In agreement with previous reports, the expression level of YS1 was decreased in the ys1 mutant. Moreover, we identified that the expression level of a homolog of tom1 in maize (Zmtom1) was significantly decreased in the ys3 mutant.
Function-related keywords:
Literature:
- Transcriptomic analyses of maize ys1 and ys3 mutants reveal maize iron homeostasis. DOI: 10.1016/j.gdata.2015.05.021 ; PMID: 26484234
Related News:
Gene Resources:
- NCBI ID: LOC103650434
- UniProt accessions: A0A804N430
Sequences:
cDNA Sequence
- >Zm00001eb133440_T002
TGTGTGTGTGCTGCTAAACCACCAAGGTCGAAGTATCCCTTACTGCTTGGTATACGTACGAGTAGCGTGTCCCTGTCCATTGTACGTACGTCGATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGACAGCTGCTCGAACCCAAGCAATGGAATAATGATGGATTAGCAAAACATATGTGCCCAAAAATACGTTTTTGAGTGGCATACAACGGAATTATGTAAAAGCTGTCAAGAAAAAGTAGCTACAATGATTGTGTCCGCTATCTTTACATCTCCTTACATTGAAGTTTTAATTTGAGCA - >Zm00001eb133440_T001
TGTGTGTGTGCTGCTAAACCACCAAGGTCGAAGTATCCCTTACTGCTTGGTATACGTACGAGTAGCGTGTCCCTGTCCATTGTACGTACGTCGATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGACAGCTGCTCGAACCCAAGCAATGGAATAATGATGGATTAGCAAAACATATGTGCCCAAAAATACGTTTTTGAGTGGCATACAACGGAATTATGTAAAAGCTGTCAAGAAAAAGTAGCTACAATGATTGTGTCCGCTATCTTTACATCTCCTTACATTGAAGTTTTAATTTGAGCA
CDS Sequence
- >Zm00001eb133440_T002
ATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGA - >Zm00001eb133440_T001
ATGGCTGAGGAGGTGCCAACGACGCCGCCGCCGGCACCATTGTACGTCGATGGCTGTCCGGGATGCGCCATGGACCGGAAGAAGGCGGCCAACAAGGGCATCCCCTACAAGGAGTTCTTCTTCGTCGCAGTCACCACCATTGCCTCTGCTTTGCCAATATCGTCCCTGTTTCCCTTCTTGTATTTCATGATCGAAGATCTACACGTGGCCAAAAAAGAACAAGATATTGGACTGTACGCTGGTTTTCTTGGTGCATCTTACTTTGTCGGTCGATTTTTGGTCTCGTTCTTCTGGGGTGTGGTGGCTGATCGTGTCGGAAGGAAGCCCATCATTATATTTTCAGTCGCTTCAGTGGTTGTATTCAACACACTGTTTGGATTAAGTGTACAATATTGGATGGCCATCACCACAAGATTGCTTCTAGGTGCTCTCAATGGCATGCTTGCACCAATAAAGGCTTACTCAATCGAGATTTGTCGACCTGAGCACCATGCTCTTGGGTTATCAGTTGTAAGCACGGCTTGGGGCCTAGGTCTTATTGTTGGCCCGTCCATTGGAGGCTACTTGGCGCAGCCTGCACGGCAATATCCAAACGTATTCTCTGAGGAATCGATTTTTGGGAGGTTCCCGTATCTGCTGCCATGCCTAAGTATCTCCATTTTTTCTGCTGTCGTTCTAGTAAGCTGCATATGGTTACCGGAGACACTCCATAAACATAAGAATATAGACAACGAAGTAGAAATGTCCGGACACTCAAGGACTCCACAAACAGAAGACGTAGATGCAGGCAAGAGTCTATATAAGAACTGGCCATTGATGTCTTCCATCATTGCGTACTGTGTTTTCACGCTTCATGACACTGCATACACCGAGATACTTTCCTTGTGGACCGTAAGTGACAAAAAGTATGGTGGGCTAGGCTTTTCTTCTAAGGGAGTTGGTCAACTTCTTGCGATTGCAGGTCTTGGGCTTATTGTGTATCAAATGTTCATCTACAGGCCAGTCCACAGATATCTCGGAAGTGTAAATTCATGCCGTGCTGCATCTGCGCTATCCATACCACTTATCGCTGCTTTTCCCTTCATGACACACCTGTCAGGATCAAAACTTGGACTAGCTCTTTATTTTGCTACTATTTTGAAAGCTGCTCTTGGGATAACTATCCTGACAGGCACTTCACTTCTGCAGAACTATGCTGTGCCACAGCATCAAAGAGGCGCCGCAAACGGCGTAGCGGCGACTGCAATGTCCTTCTTTAAGGCTATTGGACCTGCAGGAGCAGGCGCTTTATTCTCATGGACCCAAAAACGCCAAGATGCTGCCTTCTTTCCAGGGGATCACATGTTGTTCTTCATTCTGAATTTGGTCCAATGTATTGGGCTCGTGCTGACCCTTAAACCATTCCTAGCAGTACCGAAACACTATAAATGA
Protein Sequence
- >Zm00001eb133440_P002
MAEEVPTTPPPAPLYVDGCPGCAMDRKKAANKGIPYKEFFFVAVTTIASALPISSLFPFLYFMIEDLHVAKKEQDIGLYAGFLGASYFVGRFLVSFFWGVVADRVGRKPIIIFSVASVVVFNTLFGLSVQYWMAITTRLLLGALNGMLAPIKAYSIEICRPEHHALGLSVVSTAWGLGLIVGPSIGGYLAQPARQYPNVFSEESIFGRFPYLLPCLSISIFSAVVLVSCIWLPETLHKHKNIDNEVEMSGHSRTPQTEDVDAGKSLYKNWPLMSSIIAYCVFTLHDTAYTEILSLWTVSDKKYGGLGFSSKGVGQLLAIAGLGLIVYQMFIYRPVHRYLGSVNSCRAASALSIPLIAAFPFMTHLSGSKLGLALYFATILKAALGITILTGTSLLQNYAVPQHQRGAANGVAATAMSFFKAIGPAGAGALFSWTQKRQDAAFFPGDHMLFFILNLVQCIGLVLTLKPFLAVPKHYK - >Zm00001eb133440_P001
MAEEVPTTPPPAPLYVDGCPGCAMDRKKAANKGIPYKEFFFVAVTTIASALPISSLFPFLYFMIEDLHVAKKEQDIGLYAGFLGASYFVGRFLVSFFWGVVADRVGRKPIIIFSVASVVVFNTLFGLSVQYWMAITTRLLLGALNGMLAPIKAYSIEICRPEHHALGLSVVSTAWGLGLIVGPSIGGYLAQPARQYPNVFSEESIFGRFPYLLPCLSISIFSAVVLVSCIWLPETLHKHKNIDNEVEMSGHSRTPQTEDVDAGKSLYKNWPLMSSIIAYCVFTLHDTAYTEILSLWTVSDKKYGGLGFSSKGVGQLLAIAGLGLIVYQMFIYRPVHRYLGSVNSCRAASALSIPLIAAFPFMTHLSGSKLGLALYFATILKAALGITILTGTSLLQNYAVPQHQRGAANGVAATAMSFFKAIGPAGAGALFSWTQKRQDAAFFPGDHMLFFILNLVQCIGLVLTLKPFLAVPKHYK
Source: Genetic information comes from the article