Information report for Y1
Gene Details
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Functional Descriptions
- More recently, breeders have selected yellow endosperm variants of maize over ancestral white phenotypes for their increased nutritional value resulting from the up-regulation of the Y1 phytoene synthase gene product in endosperm tissue.
- Y1 a key gene controlling carotenoid pigment in endosperm which was proved under breeding selection.
- The maize Y1 gene on chromosome 6 has undergone recent selection for endosperm color phenotype.
- Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.
Literature and News
- Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. DOI: 10.1073/pnas.0307839101 ; PMID: 15161968
- Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain. DOI: 10.1093/plcell/koab032 ; PMID: 33681994
Gene Resources
- NCBI ID: 100136882
- UniProt accessions: P49085
- EMBL: AY324431 , AY773475 , BT034021 , CM000782 , U32636
- AlphaFoldDB: P49085
- EnsemblPlants: Zm00001eb271860_T001
- Gramene: Zm00001eb271860_T001
- KEGG: zma:100136882
- OMA: NEAYNRC
- ExpressionAtlas: Zm00001eb271860
- InterPro: IPR002060 , IPR008949 , IPR019845 , IPR033904 , IPR044843
- PANTHER: PTHR31480
- SUPFAM: SSF48576
- PROSITE: PS01044 , PS01045
- Gene3D: 1.10.600.10
- OrthoDB: P49085
- SMR: P49085
- CDD: cd00683
Homologs
Sequences
cDNA Sequence
- >Zm00001eb271860_T002
GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC - >Zm00001eb271860_T001
GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC
CDS Sequence
- >Zm00001eb271860_T002
ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA - >Zm00001eb271860_T001
ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA
Protein Sequence
- >Zm00001eb271860_P002
MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE - >Zm00001eb271860_P001
MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE