Gene Details:
- Gene ID: Zm00001eb271860
- Gene Symbol: Y1
- Gene Name: yellow endosperm1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- More recently, breeders have selected yellow endosperm variants of maize over ancestral white phenotypes for their increased nutritional value resulting from the up-regulation of the Y1 phytoene synthase gene product in endosperm tissue.
- Y1 a key gene controlling carotenoid pigment in endosperm which was proved under breeding selection.
- The maize Y1 gene on chromosome 6 has undergone recent selection for endosperm color phenotype.
- Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.
Function-related keywords:
Literature:
- Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. DOI: 10.1073/pnas.0307839101 ; PMID: 15161968
- Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain. DOI: 10.1093/plcell/koab032 ; PMID: 33681994
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >Zm00001eb271860_T002
GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC - >Zm00001eb271860_T001
GAGGTGCGCGTGCTCCTTGCTGTTCTGCTGACTGGTCTCACCATCTCATCCCACCACCACCACCACCACCACCATCTTTAGGATAAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAAGTAACATATATATTCTTCCTGCGACAGGCACGAACATGCATGTGTTCAATAGCACAGATGTGATGATATGACTGTCACCATGTCTTTTAGTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGAAACTTCATGAAGAGGCAGATCAAGAGGGCCAGGATGTTTTTTGAGGAGGCAGAGAGAGGGGTAACTGAGCTCTCACAGGCTAGCAGATGGCCAGTATGGGCTTCCCTGTTGTTGTACAGGCAGATCCTGGATGAGATCGAAGCCAACGACTACAACAACTTCACGAAGAGGGCGTATGTTGGTAAAGGGAAGAAGTTGCTAGCACTTCCTGTGGCATATGGAAAATCGCTACTGCTCCCATGTTCATTGAGAAATGGCCAGACCTAGCCACCAGAGAAGCTGCAATGCAAGGTTCAGGTTAGGCTAGATAGAAAGTTAAATGGGGCAACATCAGGAGGCCTTGATGAAAAACAGACAACCTGGTGAATTGTTGTTGGGATCAGGCACAGAACAGATAAGAGCCGCGCAGCCAACCTAGGGCATGTTTGGTTTCAATTAGTTCTAGGACTAAACTTTAGTCCTAGGACTAAACTTTAGTCCCTATATGTTTGGTTCTAGGGACTAAATAGATTCTAAAGTCATTAAATACATTGTCCAAAGACTCAAATACCCTTAGAATATACTCATGATATTAGTTATCTATAAAAAGGTAAGGGCAACATGATAATTATGAGCTTTTAGTCTCTTTTAGCACCTATGTGAAGGACTAAAGACTAAATCATTTTAGTCCATATTTTAGTCCTAGTGTTTGGCAAAAAAGGGACTAAAAGGGACTAAAAACTAGAGACTAATCTTTAGTCCCTCTAACCAAACACCCCCCTAGATGGATACGGAACATTCGCCTCTTATTCGGAGCAATATATGTCTCTCAAGGAAAGAGCCCAACATGTATACTGCCTTCTTTTTC
CDS Sequence
- >Zm00001eb271860_T002
ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA - >Zm00001eb271860_T001
ATGGCCATCATACTCGTACGAGCAGCGTCGCCGGGGCTCTCCGCCGCCGACAGCATCAGCCACCAGGGGACTCTCCAGTGCTCCACCCTGCTCAAGACGAAGAGGCCGGCGGCGCGCCGGTGGATGCCCTGCTCGCTCCTTGGCCTCCACCCGTGGGAGGCTGGCCGTCCCTCCCCCGCCGTCTACTCCAGCCTCGCCGTCAACCCGGCGGGAGAGGCCGTCGTCTCGTCCGAGCAGAAGGTCTACGACGTCGTGCTCAAGCAGGCCGCATTGCTCAAACGCCAGCTGCGCACGCCGGTCCTCGACGCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGTGTGGTGTAGGAGGACAGATGAGCTTGTAGATGGGCCAAACGCCAACTACATTACACCAACAGCTTTGGACCGGTGGGAGAAGAGACTTGAGGATCTGTTCACGGGACGTCCTTACGACATGCTTGATGCCGCTCTCTCTGATACCATCTCAAGGTTCCCCATAGACATTCAGCCATTCAGGGACATGATTGAAGGGATGAGGAGTGATCTTAGGAAGACAAGGTATAACAACTTCGACGAGCTCTACATGTACTGCTACTATGTTGCTGGAACTGTCGGGTTAATGAGCGTACCTGTGATGGGCATCGCAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAGTAA
Protein Sequence
- >Zm00001eb271860_P002
MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE - >Zm00001eb271860_P001
MAIILVRAASPGLSAADSISHQGTLQCSTLLKTKRPAARRWMPCSLLGLHPWEAGRPSPAVYSSLAVNPAGEAVVSSEQKVYDVVLKQAALLKRQLRTPVLDARPQDMDMPRNGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIYVWCRRTDELVDGPNANYITPTALDRWEKRLEDLFTGRPYDMLDAALSDTISRFPIDIQPFRDMIEGMRSDLRKTRYNNFDELYMYCYYVAGTVGLMSVPVMGIATESKATTESVYSAALALGIANQLTNILRDVGEE
Source: Genetic information comes from the article