Information report for Smk501
Gene Details
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Functional Descriptions
- Through genetic and molecular analyses of a small kernel 501 (Smk501) mutant in maize (Zea mays), we cloned the Smk501 gene, revealed its molecular function, and defined its roles in RUBylation pathway and seed development.
- Smk501 encodes a RUBylation activating enzyme E1 subunit ZmECR1 (E1 C-TERMINAL RELATED 1) protein.
- Smk501 gene, revealed its molecular function, and defined its roles in RUBylation pathway and seed development.
- Smk501 knockdown affects cell proliferation and hormone homeostasis.
- Small kernel 501 (Smk501) encodes the RUBylation activating enzyme E1 subunit ECR1 (E1 C-TERMINAL RELATED 1) and is essential for multiple aspects of cellular events during kernel development in maize.
Functional Keywords
Literature and News
- Small kernel 501 (smk501) encodes the RUBylation activating enzyme E1 subunit ECR1 (E1 C-TERMINAL RELATED 1) and is essential for multiple aspects of cellular events during kernel development in maize. DOI: 10.1111/nph.17354 ; PMID: 33749863
- Molecular mechanisms controlling grain size and weight and their biotechnological breeding applications in maize and other cereal crops. DOI: 10.1016/j.jare.2023.09.016 ; PMID: 37739122
Gene Resources
- NCBI ID: LOC100283559
- UniProt accessions: B4FVB9
- EMBL: BT041057 , BT083553 , CM000784
- EnsemblPlants: Zm00001eb332890_T002
- Gramene: Zm00001eb332890_T002
- KEGG: zma:100283559
- OMA: PYLENYM
- ExpressionAtlas: Zm00001eb332890
- InterPro: IPR000594 , IPR014929 , IPR023318 , IPR030468 , IPR033127 , IPR035985 , IPR045886
- PANTHER: PTHR10953 , PTHR10953:SF6
- SUPFAM: SSF69572
- PROSITE: PS00865
- Gene3D: 1.10.10.520 , 3.10.290.20 , 3.40.50.720
- OrthoDB: B4FVB9
- CDD: cd01488
Sequences
cDNA Sequence
- >Zm00001eb332890_T001
AGCAGCTTTCCCATTCTCATATTTATATTTAAATTCTATTTTACAAACAGAACACTGTATTTAGTTAATCAGTGAGTCGGCTCACCGAAACGAAACAGCAGTTGAGCTTATTTACTTTTTCGAAGAAACCACAACCAAACCTCGGCTGCTCGGTGGTCGGTGCCCAGGTGCGCCGATTATCTCCATCAAAGCCGCGCATCCCGCTGCCCCCTTACTCATCCTCCCCGCTGCTCGAAGGAGAGCCAAATCCAGAGCGCCGCCGCGATGGCCTCCCCTGACGCGGAACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGATGCCGGTCGTCGTCGTCTTGTTGCTAATTTCAAGTCTCCCAGGAAAGATGAGGATTAACCCAATGTTTTTGGACAGGTTAAGTGTAGTTTTCGAGCGCCATATTACAAATTGAAATGTGCGCCTGATACTGTTCAAACATGAAGAAATTTATCGTAGATGATACTATGGTTTTGTGAGAATCTACTTCTTGGTGTTTCGAATCTTGCTCGACAAGTAAATTAAATTTATTGTGCGTATTCTGAGTTTTGGAGCGTGTACGCGGTGGAGAATGTAAGATTTATACTAGTTCGGACAGAACGTTCTTACTTTCAGTCATTGTGGCTTATGCTATTGGTATTATTGATGGTTAAAACTTATATTAAAGGTTACAAGCGGGTGAAAGAGGGAGGAGAGGCTCCTAGGTCTTTTATCGGGGTGGAAGTGAAGCTAAGAGCTATAGAG - >Zm00001eb332890_T002
AGCAGCTTTCCCATTCTCATATTTATATTTAAATTCTATTTTACAAACAGAACACTGTATTTAGTTAATCAGTGAGTCGGCTCACCGAAACGAAACAGCAGTTGAGCTTATTTACTTTTTCGAAGAAACCACAACCAAACCTCGGCTGCTCGGTGGTCGGTGCCCAGGTGCGCCGATTATCTCCATCAAAGCCGCGCATCCCGCTGCCCCCTTACTCATCCTCCCCGCTGCTCGAAGGAGAGCCAAATCCAGAGCGCCGCCGCGATGGCCTCCCCTGACGCGGAACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGATGCCGGTCGTCGTCGTCTTGTTGCTAATTTCAAGTCTCCCAGGAAAGATGAGGATTAACCCAATGTTTTTGGACAGGTTAAGTGTAGTTTTCGAGCGCCATATTACAAATTGAAATGTGCGCCTGATACTGTTCAAACATGAAGAAATTTATCGTAGATGATACTATGGTTTTGTGAGAATCTACTTCTTGGTGTTTCGAATCTTGCTCGACAAGTAAATTAAATTTATTGTGCGTATTCTGAGTTTTGGAGCGTGTACGCGGTGGAGAATGTAAGATTTATACTAGTTCGGACAGAACGTTCTTACTTTCAGTCATTGTGGCTTATGCTATTGGTATTATTGATGGTTAAAACTTATATTAAAGGTTACAAGCGGGTGAAAGAGGGAGGAGAGGCTCCTAGGTCTTTTATCGGGGTGGAAGTGAAGCTAAGAGCTATAGAG
CDS Sequence
- >Zm00001eb332890_T001
ATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGA - >Zm00001eb332890_T002
ATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGA
Protein Sequence
- >Zm00001eb332890_P001
MERVNGVNIVPHFCRIEDKEIEFYSQFHIIVLGLDSIEARSYINSVACGFLDYDSSDNPLQETVKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHPGKPFDGDDAEHMQWIYSEALKRAELFGISGVTYSLTQGVVKNIIPAIASTNAIISAACALEALKLISGCSKSVSNYLTYNGLEGTHIKVTEFVRDKDCLVCGPGTLVELDTSSTLSDFIKMLEEHPKLRMSKASVTHEGNNLYMQSPEVLEQMTRPNLSIPMFELLKEVPYTTVHATGMAENNGKKVSSLRKLRVAFKGIEDASKMDTTVSS - >Zm00001eb332890_P002
MERVNGVNIVPHFCRIEDKEIEFYSQFHIIVLGLDSIEARSYINSVACGFLDYDSSDNPLQETVKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHPGKPFDGDDAEHMQWIYSEALKRAELFGISGVTYSLTQGVVKNIIPAIASTNAIISAACALEALKLISGCSKSVSNYLTYNGLEGTHIKVTEFVRDKDCLVCGPGTLVELDTSSTLSDFIKMLEEHPKLRMSKASVTHEGNNLYMQSPEVLEQMTRPNLSIPMFELLKEVPYTTVHATGMAENNGKKVSSLRKLRVAFKGIEDASKMDTTVSS