Gene Details:
- Gene ID: Zm00001eb332890
- Gene Symbol: Smk501
- Gene Name: small kernel 501
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- Through genetic and molecular analyses of a small kernel 501 (Smk501) mutant in maize (Zea mays), we cloned the Smk501 gene, revealed its molecular function, and defined its roles in RUBylation pathway and seed development.
- Smk501 encodes a RUBylation activating enzyme E1 subunit ZmECR1 (E1 C-TERMINAL RELATED 1) protein.
- Smk501 gene, revealed its molecular function, and defined its roles in RUBylation pathway and seed development.
- Smk501 knockdown affects cell proliferation and hormone homeostasis.
- Small kernel 501 (Smk501) encodes the RUBylation activating enzyme E1 subunit ECR1 (E1 C-TERMINAL RELATED 1) and is essential for multiple aspects of cellular events during kernel development in maize.
Function-related keywords:
Literature:
- Small kernel 501 (smk501) encodes the RUBylation activating enzyme E1 subunit ECR1 (E1 C-TERMINAL RELATED 1) and is essential for multiple aspects of cellular events during kernel development in maize. DOI: 10.1111/nph.17354 ; PMID: 33749863
- Molecular mechanisms controlling grain size and weight and their biotechnological breeding applications in maize and other cereal crops. DOI: 10.1016/j.jare.2023.09.016 ; PMID: 37739122
Related News:
Gene Resources:
- NCBI ID: LOC100283559
- UniProt accessions: B4FVB9
Sequences:
cDNA Sequence
- >Zm00001eb332890_T001
AGCAGCTTTCCCATTCTCATATTTATATTTAAATTCTATTTTACAAACAGAACACTGTATTTAGTTAATCAGTGAGTCGGCTCACCGAAACGAAACAGCAGTTGAGCTTATTTACTTTTTCGAAGAAACCACAACCAAACCTCGGCTGCTCGGTGGTCGGTGCCCAGGTGCGCCGATTATCTCCATCAAAGCCGCGCATCCCGCTGCCCCCTTACTCATCCTCCCCGCTGCTCGAAGGAGAGCCAAATCCAGAGCGCCGCCGCGATGGCCTCCCCTGACGCGGAACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGATGCCGGTCGTCGTCGTCTTGTTGCTAATTTCAAGTCTCCCAGGAAAGATGAGGATTAACCCAATGTTTTTGGACAGGTTAAGTGTAGTTTTCGAGCGCCATATTACAAATTGAAATGTGCGCCTGATACTGTTCAAACATGAAGAAATTTATCGTAGATGATACTATGGTTTTGTGAGAATCTACTTCTTGGTGTTTCGAATCTTGCTCGACAAGTAAATTAAATTTATTGTGCGTATTCTGAGTTTTGGAGCGTGTACGCGGTGGAGAATGTAAGATTTATACTAGTTCGGACAGAACGTTCTTACTTTCAGTCATTGTGGCTTATGCTATTGGTATTATTGATGGTTAAAACTTATATTAAAGGTTACAAGCGGGTGAAAGAGGGAGGAGAGGCTCCTAGGTCTTTTATCGGGGTGGAAGTGAAGCTAAGAGCTATAGAG - >Zm00001eb332890_T002
AGCAGCTTTCCCATTCTCATATTTATATTTAAATTCTATTTTACAAACAGAACACTGTATTTAGTTAATCAGTGAGTCGGCTCACCGAAACGAAACAGCAGTTGAGCTTATTTACTTTTTCGAAGAAACCACAACCAAACCTCGGCTGCTCGGTGGTCGGTGCCCAGGTGCGCCGATTATCTCCATCAAAGCCGCGCATCCCGCTGCCCCCTTACTCATCCTCCCCGCTGCTCGAAGGAGAGCCAAATCCAGAGCGCCGCCGCGATGGCCTCCCCTGACGCGGAACAGCCGGCGCCGACGGAACTCGAGCGGTGGCGTGACCTCGACATGCTCTTGTCCCGCCCTGGAAACCTCGTGGAGGCCACTTTCGATCCCAGCCCCGGCAGTTCAAGATGTTGGGAAGTCCAAGGCTGAAGTAGCAGCGAAGAGGGTTATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGATGCCGGTCGTCGTCGTCTTGTTGCTAATTTCAAGTCTCCCAGGAAAGATGAGGATTAACCCAATGTTTTTGGACAGGTTAAGTGTAGTTTTCGAGCGCCATATTACAAATTGAAATGTGCGCCTGATACTGTTCAAACATGAAGAAATTTATCGTAGATGATACTATGGTTTTGTGAGAATCTACTTCTTGGTGTTTCGAATCTTGCTCGACAAGTAAATTAAATTTATTGTGCGTATTCTGAGTTTTGGAGCGTGTACGCGGTGGAGAATGTAAGATTTATACTAGTTCGGACAGAACGTTCTTACTTTCAGTCATTGTGGCTTATGCTATTGGTATTATTGATGGTTAAAACTTATATTAAAGGTTACAAGCGGGTGAAAGAGGGAGGAGAGGCTCCTAGGTCTTTTATCGGGGTGGAAGTGAAGCTAAGAGCTATAGAG
CDS Sequence
- >Zm00001eb332890_T001
ATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGA - >Zm00001eb332890_T002
ATGGAGCGAGTTAATGGGGTGAACATAGTTCCTCATTTTTGCAGGATTGAAGATAAAGAGATAGAGTTCTACAGTCAGTTCCACATAATTGTCCTAGGTCTGGATTCAATTGAAGCTCGAAGCTACATCAATTCTGTGGCTTGTGGTTTCTTAGATTATGACTCAAGTGACAATCCACTCCAAGAGACGGTTAAACCTATGGTAGATGGTGGAACTGAGGGCTTCAAGGGACACGCTAGAGTCATTATACCTGGAACAACACCTTGCTTTGAATGCAACATATGGCTTTTTCCTCCACAGGTTAAGTTCCCTTTATGTACTCTCGCCGAGACACCAAGAACTGCAGCTCACTGCATTGAGTATGCTCACTTGATCAAATGGGATGAGGTTCATCCTGGAAAACCTTTTGATGGCGATGATGCAGAGCATATGCAGTGGATTTATTCAGAGGCTTTAAAGAGAGCAGAGCTTTTCGGTATTTCTGGTGTTACATATTCTTTGACACAGGGTGTTGTCAAAAATATAATCCCAGCCATTGCATCAACGAATGCAATTATATCGGCTGCTTGTGCATTGGAAGCCTTAAAGCTTATTTCTGGGTGCAGCAAAAGTGTGTCAAACTATCTCACGTACAACGGTCTGGAAGGAACACACATTAAAGTAACTGAGTTTGTCAGAGACAAAGATTGCCTTGTATGTGGGCCTGGTACCCTTGTTGAGCTGGATACGTCATCTACTCTTTCAGATTTCATCAAGATGCTTGAAGAGCACCCCAAGTTGCGGATGTCGAAAGCCAGCGTGACGCACGAAGGTAACAACCTGTACATGCAGTCACCGGAGGTGCTGGAGCAGATGACACGGCCAAACCTGAGCATCCCCATGTTTGAGCTTCTCAAAGAGGTCCCATACACCACTGTCCATGCCACGGGCATGGCAGAGAACAACGGGAAAAAAGTGTCCTCGTTGAGGAAGCTCCGTGTGGCCTTCAAGGGCATCGAAGACGCCTCCAAGATGGATACGACCGTGAGCTCATGA
Protein Sequence
- >Zm00001eb332890_P001
MERVNGVNIVPHFCRIEDKEIEFYSQFHIIVLGLDSIEARSYINSVACGFLDYDSSDNPLQETVKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHPGKPFDGDDAEHMQWIYSEALKRAELFGISGVTYSLTQGVVKNIIPAIASTNAIISAACALEALKLISGCSKSVSNYLTYNGLEGTHIKVTEFVRDKDCLVCGPGTLVELDTSSTLSDFIKMLEEHPKLRMSKASVTHEGNNLYMQSPEVLEQMTRPNLSIPMFELLKEVPYTTVHATGMAENNGKKVSSLRKLRVAFKGIEDASKMDTTVSS - >Zm00001eb332890_P002
MERVNGVNIVPHFCRIEDKEIEFYSQFHIIVLGLDSIEARSYINSVACGFLDYDSSDNPLQETVKPMVDGGTEGFKGHARVIIPGTTPCFECNIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHPGKPFDGDDAEHMQWIYSEALKRAELFGISGVTYSLTQGVVKNIIPAIASTNAIISAACALEALKLISGCSKSVSNYLTYNGLEGTHIKVTEFVRDKDCLVCGPGTLVELDTSSTLSDFIKMLEEHPKLRMSKASVTHEGNNLYMQSPEVLEQMTRPNLSIPMFELLKEVPYTTVHATGMAENNGKKVSSLRKLRVAFKGIEDASKMDTTVSS
Source: Genetic information comes from the article