Information report for RUM1
Gene Details
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Functional Descriptions
- The maize (Zea mays L.) Aux/IAA protein RUM1 (ROOTLESS WITH UNDETECTABLE MERISTEMS 1) controls seminal and lateral root initiation.
- In line with this phenotype, RUM1-dependent mis-expression of several lignin biosynthesis genes was observed.
- The Aux/IAA gene RUM1 involved in seminal and lateral root formation controls vascular patterning in maize primary roots.
- Revealed the specific regulation of auxin signal transduction components by RUM1 and novel functions of RUM1 in vascular development.
- The RUM1 mutant displays enhanced lignification of aberrant pith cells.
- Heteroscedastic piecewise linear models were estimated for maize lateral roots of various lengths of both wild type and two mutants affected in auxin signaling (rtcs and rum-1).
Functional Keywords
Literature and News
- The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. DOI: 10.1093/jxb/eru249 ; PMID: 24928984
- Deconstructing the root system of grasses through an exploration of development, anatomy and function. DOI: 10.1111/pce.14270 ; PMID: 35092025
- Identifying Developmental Zones in Maize Lateral Root Cell Length Profiles using Multiple Change-Point Models. DOI: 10.3389/fpls.2017.01750 ; PMID: 29123533
Gene Resources
- NCBI ID: 100284457
- UniProt accessions: B6TTY7
- EMBL: EU968452
- AlphaFoldDB: B6TTY7
- KEGG: zma:100284457
- InterPro: IPR003311 , IPR033389 , IPR053793
- PANTHER: PTHR31734 , PTHR31734:SF16
- SUPFAM: SSF54277
- PROSITE: PS51745
- Gene3D: 3.10.20.90
- OrthoDB: B6TTY7
Homologs
- Brassica napus: BnaA05G0331100ZS, BnaA03G0375100ZS
- Brassica oleracea: Bo3g081600
- Brassica rapa: Bra001900, Bra033886
- Cucumis melo: MELO3C026762
- Glycine max: GmIAA9;qSW2
- Gossypium hirsutum: Gohir.D11G132700
- Lactuca sativa: gene-LSAT_5X66981
- Medicago truncatula: Medtr1g070520
- Oryza sativa: OsIAA17q5, OsIAA3
- Sesamum indicum: SIN_1021838
- Triticum aestivum: TaIAA21-A, TaIAA21-B, TaIAA17-3A, TaIAA17-3B, TaIAA17-3D
Sequences
cDNA Sequence
- >Zm00001eb156910_T001
AGCAAGTCGTCGCTCCCACCCCACCTCACCATCTCCACTCCAAACAAGGGGAAGGCGAGCGACAGACAAACCCACCCTATCGCCCCTCCTCTGTCTCCTCTCTTGCCCACCCGCCCCAATGTCGCCGCCCCTCGAGCCCCACGACTACATCGGCCTCTCCGCCGTGGCCGCGGCCGCGCCGCCGACCCCGACCCCGACCTCCTCCTCCTCTTCGTCCTCCTCGCCGGCCCCCCGTCTCACCCTTCGCCTCGGCCTGCCGGGCTCCGAGTCCCCCGACCGCGACCGGGACTGCTGCGAGGACGTCGCCGCCACGCTCTCCCTCGGCCCGCTGCCGGCGGCCGCCGCCGTCTCCGCCAAGCGCGCCTTCCCGGACCCCGCCCAGCGCCCCGGCGCTTCCAAGGCTAGCGACGCCAAGCAGCAGGCTTCCCCCGCCGCGCCGCCGGCCGCCAAAGCGCAGGTGGTTGGATGGCCGCCCGTGCGCAACTACCGGAAGAATACCCTCGCCGCCGCGACCGCCTCCAGGAGCAAGGCGCCGGCGGAGGAGGCCGCGTCCGGAGCTGGGCCCATGTACGTGAAGGTGAGCATGGATGGCGCGCCCTACCTCAGGAAGGTGGACATCAAGATGTACTCCAGCTACGAGGACCTCTCCCTGGCGCTCGAGAAGATGTTCAGCTGCTTCATCGCTGGTCAAAGTGGTCTGCATAAATCATCGAGCAAAGACAGGCTCACTAATGGCTCAAAGGTGGATGCTCTCAAAGATCAGGAGTATGTCCTTACATATGAGGATAAGGATGCAGACTGGATGCTTGTCGGTGATCTTCCCTGGGATTATTTTACCTCTATCTGCCGGAAGCTCAAAATCATGAGGGGCTCTGATGCTGTTGGAATAGCTCCACGAACCGTCGAGCAGACAGGTCAGAACAAATAAGCTTTGGCCTTTGCCTGCATCCAAGGAAGACATCTGAGCTAGCTGGGAGACTATGTTGAAGGCTGAAGCCTGAAATAGTTGCCGGGAATCGTCAAAACCCGTCAAGTGTTTAGTGTAGTTTTCACGTGTCCTTGAGACATGTGCATTTGTATGTCTGTGACGTGATCCGTTAGATCGTGCAATCGTAGGTTGCTGTTCTTGTGCCCTTTGAAGGCCAGACAGATCAGGGAGCTCTCTGCTTCCTTAGTGCACTTGCTTTGCAGCATTCCTTGTTATTCTACTCTGAAATCATACATCATGCCACAAGAACCGATGGTTCGTGATGTCAAGAGAGCTGCCCTAATTGTTCCATTGTAACCTCGTAATTGTGTTCTTCCGCAGGAGAAATTGGTGCTGCACTCAGCTTCCTACC
CDS Sequence
- >Zm00001eb156910_T001
ATGTCGCCGCCCCTCGAGCCCCACGACTACATCGGCCTCTCCGCCGTGGCCGCGGCCGCGCCGCCGACCCCGACCCCGACCTCCTCCTCCTCTTCGTCCTCCTCGCCGGCCCCCCGTCTCACCCTTCGCCTCGGCCTGCCGGGCTCCGAGTCCCCCGACCGCGACCGGGACTGCTGCGAGGACGTCGCCGCCACGCTCTCCCTCGGCCCGCTGCCGGCGGCCGCCGCCGTCTCCGCCAAGCGCGCCTTCCCGGACCCCGCCCAGCGCCCCGGCGCTTCCAAGGCTAGCGACGCCAAGCAGCAGGCTTCCCCCGCCGCGCCGCCGGCCGCCAAAGCGCAGGTGGTTGGATGGCCGCCCGTGCGCAACTACCGGAAGAATACCCTCGCCGCCGCGACCGCCTCCAGGAGCAAGGCGCCGGCGGAGGAGGCCGCGTCCGGAGCTGGGCCCATGTACGTGAAGGTGAGCATGGATGGCGCGCCCTACCTCAGGAAGGTGGACATCAAGATGTACTCCAGCTACGAGGACCTCTCCCTGGCGCTCGAGAAGATGTTCAGCTGCTTCATCGCTGGTCAAAGTGGTCTGCATAAATCATCGAGCAAAGACAGGCTCACTAATGGCTCAAAGGTGGATGCTCTCAAAGATCAGGAGTATGTCCTTACATATGAGGATAAGGATGCAGACTGGATGCTTGTCGGTGATCTTCCCTGGGATTATTTTACCTCTATCTGCCGGAAGCTCAAAATCATGAGGGGCTCTGATGCTGTTGGAATAGCTCCACGAACCGTCGAGCAGACAGGTCAGAACAAATAA
Protein Sequence
- >Zm00001eb156910_P001
MSPPLEPHDYIGLSAVAAAAPPTPTPTSSSSSSSSPAPRLTLRLGLPGSESPDRDRDCCEDVAATLSLGPLPAAAAVSAKRAFPDPAQRPGASKASDAKQQASPAAPPAAKAQVVGWPPVRNYRKNTLAAATASRSKAPAEEAASGAGPMYVKVSMDGAPYLRKVDIKMYSSYEDLSLALEKMFSCFIAGQSGLHKSSSKDRLTNGSKVDALKDQEYVLTYEDKDADWMLVGDLPWDYFTSICRKLKIMRGSDAVGIAPRTVEQTGQNK