Gene Details:
- Gene ID: Zm00001eb403030
- Gene Symbol: RTCL
- Gene Name: RTCS-like1
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- The RTCS-LIKE (RTCL) gene displays 72% sequence identity on the protein level. Both genes are preferentially expressed in roots. Expression of RTCS in coleoptilar nodes is confined to emerging shoot-borne root primordia.
- Sequence analyses of the RTCS and RTCL upstream genomic regions identified auxin response elements.
- RTCS and RTCL are auxin-responsive genes involved in the early events that lead to the initiation and maintenance of seminal and shoot-borne root primordia formation.
- The RTCS and RTCL promoters contain auxin response elements and the genes are auxin inducible.
Function-related keywords:
- root , shoot , auxin , root-initiation , auxin-response
Literature:
- The maize (Zea mays L.) RTCS gene encodes a LOB domain protein that is a key regulator of embryonic seminal and post-embryonic shoot-borne root initiation. DOI: 10.1111/j.1365-313X.2007.03075.x ; PMID: 17425722
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >Zm00001eb403030_T001
GGTCATAAAATGAAATGCTAGACTTTAGCACAGTGTATCAAATAGGTCCTTAGTCTCCCAAAACAAAAAGAGAGAGAGAGAGAGATAAGGAAATAGTACTCCTGCTAGGCTTATTGTAGTAGGGTGCCCCATGCGGTGCAGGGAGGGTGTCACCAAAAAAAAACTTAGCGGTAAGGAGCGAGGGCGATTGGAAGCTCAAAATAATGGAGCTGGTTGTCCACCGGGCAGACACGCCTGGTTTGTTTAATCCTTTGGCCCTAATCCCCCAGCCCTGCTGCCGTCTCCTTCTCCTCCTTATAAGCATTGCCGCCCCGCCCCCATCCTCCACCGCACCACAGCCGCAGTCAGCAGGGCAAGAACACGAAGTGATCGTCGCCACCGATCGATCCAGCTCGAGCTGAGCGAGCTATCACGTGCAGCACAGTGCAGTACAGAACAGCTGTGCTTGCAGTCTTGCAGATGGAGATGACGGGGTTCGGGTCACCGTGCGGAGCGTGCAAGTTCCTGCGGCGCAGGTGCGCGCGCGGCTGCGTCTTCGCGCCCTACTTCTGCGACGAGCAGGGCGCGGCGCACTTCGCCGCCATCCACAAGGTGTTCGGCGCCAGCAACGCGTCCAAGCTGCTCGCGCACCTGCCGCTCGCCGACCGCCCGGAGGCCGCCGCCACCATCTCCTACGAGGCGCAGGCGAGGCTGCGCGACCCCACCTACGGCTGCGTCGCCCACATCTTCGCGCTCCAGCAGCAGGTGATGGCCCTGCAGACGCAGCTGGCGTCGCTCACGGTCACGGCGCAGGGGCAGCAGCGCGTGCACGACGTCGACGACGCCAAGGGCTACGTGGGCACCGCCGCCGCGGGGCAGCTAGGGTGCAGCAGCAATGGAAGCGTCGCGCCGGCCACGTACGGCAATGTCGGGCACGAGTCCCTGACCGCGCTGCTGAGGTCGGAGTCGGACTACTTGCAGCAGTCGCCGTGCCACGCGTTCGAGCACGCCGGCGCGGACGACAAGGACGACGACGGCCGGCAGGGGAACACCTTCGACTTCGAGGCAGCGGCCGACTCCTCGTCGTTCGGGGCGGAGGAGAGCGGGTGGAGGTCGTTGTCAGGGTACCGAGACTGCGAGGACCTGCAGAGCGTGGCTTATGCTTACCTGAACCATCTCTCTTAAAAGAGCTGAGAACTACTTACTCGTAGTGCCGGAAATGTATCACAAGAGATCAGAGAGAGAGATCATGTTTTGGACTTGAGCTTGGGATGTGTGCGATTTTCGATCGGTCTCCGCTAGAAACAATTCAGAAGGTAGCATGCATGTGACAGCCCGTTG
CDS Sequence
- >Zm00001eb403030_T001
ATGACGGGGTTCGGGTCACCGTGCGGAGCGTGCAAGTTCCTGCGGCGCAGGTGCGCGCGCGGCTGCGTCTTCGCGCCCTACTTCTGCGACGAGCAGGGCGCGGCGCACTTCGCCGCCATCCACAAGGTGTTCGGCGCCAGCAACGCGTCCAAGCTGCTCGCGCACCTGCCGCTCGCCGACCGCCCGGAGGCCGCCGCCACCATCTCCTACGAGGCGCAGGCGAGGCTGCGCGACCCCACCTACGGCTGCGTCGCCCACATCTTCGCGCTCCAGCAGCAGGTGATGGCCCTGCAGACGCAGCTGGCGTCGCTCACGGTCACGGCGCAGGGGCAGCAGCGCGTGCACGACGTCGACGACGCCAAGGGCTACGTGGGCACCGCCGCCGCGGGGCAGCTAGGGTGCAGCAGCAATGGAAGCGTCGCGCCGGCCACGTACGGCAATGTCGGGCACGAGTCCCTGACCGCGCTGCTGAGGTCGGAGTCGGACTACTTGCAGCAGTCGCCGTGCCACGCGTTCGAGCACGCCGGCGCGGACGACAAGGACGACGACGGCCGGCAGGGGAACACCTTCGACTTCGAGGCAGCGGCCGACTCCTCGTCGTTCGGGGCGGAGGAGAGCGGGTGGAGGTCGTTGTCAGGGTACCGAGACTGCGAGGACCTGCAGAGCGTGGCTTATGCTTACCTGAACCATCTCTCTTAA
Protein Sequence
- >Zm00001eb403030_P001
MTGFGSPCGACKFLRRRCARGCVFAPYFCDEQGAAHFAAIHKVFGASNASKLLAHLPLADRPEAAATISYEAQARLRDPTYGCVAHIFALQQQVMALQTQLASLTVTAQGQQRVHDVDDAKGYVGTAAAGQLGCSSNGSVAPATYGNVGHESLTALLRSESDYLQQSPCHAFEHAGADDKDDDGRQGNTFDFEAAADSSSFGAEESGWRSLSGYRDCEDLQSVAYAYLNHLS
Source: Genetic information comes from the article