Information report for RBM48;dek42
Gene Details
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Functional Descriptions
- The maize (Zea mays) RNA binding motif protein 48 (RBM48) is a U12 splicing factor that functions to promote cell differentiation and repress cell proliferation.
- Protein-protein interactions between RBM48, RGH3, and U2 Auxiliary Factor (U2AF) subunits suggest major and minor spliceosome factors required for intron recognition form complexes with RBM48.
- RBM48 is likely to function in U12 splicing throughout eukaryotes and that U12 splicing promotes endosperm cell differentiation in maize.
- RBM48 mutations disrupt maize seed development.
- RBM48 Disrupts Endosperm Cellular Development.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC100280490
- UniProt accessions: A0A1D6QV55 , A0A1D6QV56 , A0A1D6QV57
- EMBL: CM000780
- AlphaFoldDB: A0A1D6QV57
- InterPro: IPR039599
- PANTHER: PTHR20957 , PTHR20957:SF0
Sequences
cDNA Sequence
- >Zm00001eb209860_T004
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T001
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T003
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T002
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG
CDS Sequence
- >Zm00001eb209860_T004
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T001
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T003
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T002
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA
Protein Sequence
- >Zm00001eb209860_P004
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P001
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P003
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P002
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI