Gene Details:
- Gene ID: Zm00001eb209860
- Gene Symbol: RBM48 dek42
- Gene Name: RNA binding motif protein 48
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- The maize (Zea mays) RNA binding motif protein 48 (RBM48) is a U12 splicing factor that functions to promote cell differentiation and repress cell proliferation.
- Protein-protein interactions between RBM48, RGH3, and U2 Auxiliary Factor (U2AF) subunits suggest major and minor spliceosome factors required for intron recognition form complexes with RBM48.
- RBM48 is likely to function in U12 splicing throughout eukaryotes and that U12 splicing promotes endosperm cell differentiation in maize.
- RBM48 mutations disrupt maize seed development.
- RBM48 Disrupts Endosperm Cellular Development.
Function-related keywords:
- development , seed , endosperm , seed-development , cell-proliferation , cellular-proliferation , endosperm-development
Literature:
- RNA Binding Motif Protein 48 Is Required for U12 Splicing and Maize Endosperm Differentiation. DOI: 10.1105/tpc.18.00754 ; PMID: 30760564
- Dek42 encodes an RNA-binding protein that affects alternative pre-mRNA splicing and maize kernel development. DOI: 10.1111/jipb.12798 ; PMID: 30839161
Related News:
Gene Resources:
- NCBI ID: LOC100280490
- UniProt accessions: A0A1D6QV55 , A0A1D6QV56 , A0A1D6QV57
Sequences:
cDNA Sequence
- >Zm00001eb209860_T004
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T001
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T003
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG - >Zm00001eb209860_T002
CCCACCGCCACCGCCACCGCCGTCCCGCTCCACGCGTCCGCACCCTCTGCGCGGCGCCGGTCGAGAACTCGTGATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGATTGCAGATAATGCCGAGCACGCGTTCAATGTTTTGGTGTAATGTTGATATTAGCATAACATACCAGGATTTTAATGGACTTTTTTCTATCAATTTTCTCACTCACATTCTAG
CDS Sequence
- >Zm00001eb209860_T004
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T001
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T003
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA - >Zm00001eb209860_T002
ATGCCCCGCGACCGCGACGAGCCAGCCGCCGTGCGCGTCTACACCGTCTGCGACGAGTCCAGGTGCACGCCCATGGATGCAGAGGACTCTGAGCCCTACACTGACGTCTTCTTCGTCAAGTTCTCACAGGTCAACAACGCCAGGTTTGCAAAGAGGAAGCTTGACGAGTCTGTGTTTCTTGGCAACCGCCTGCAGGTGACCTATGCCCCTCAATTTGAGAGCCCTCAAGATACCAAGGAGAAACTGGAAGTTAGGAGAAAAGAAGTCCTTGGCCGAATAAAATCATCTGCTGGCAGACCTGAAGGATCATCTCCAGCTCAGGGATCATCTAGTGGGAATCACCACCAAATGAACTCTAATAAGAGGGAATATATGAAGACAATTCATGCTTCTCCTATTGAAGATCCTCGTTTCAGTCATGTGTCCTCAGACAAGGATTATTTTCCATCCGAGTCGATGAATGCTACTGTAAAGCTAGTCAGAGGGAAGCTTGATAAGATACAATCTGGTGGTGATAATTCCAGTACCTCAGCAGCATCCAGGAAACCAGGGGTTGATAAGCGCAGGCGAATTTGA
Protein Sequence
- >Zm00001eb209860_P004
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P001
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P003
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI - >Zm00001eb209860_P002
MPRDRDEPAAVRVYTVCDESRCTPMDAEDSEPYTDVFFVKFSQVNNARFAKRKLDESVFLGNRLQVTYAPQFESPQDTKEKLEVRRKEVLGRIKSSAGRPEGSSPAQGSSSGNHHQMNSNKREYMKTIHASPIEDPRFSHVSSDKDYFPSESMNATVKLVRGKLDKIQSGGDNSSTSAASRKPGVDKRRRI
Source: Genetic information comes from the article