Information report for PhyB2;pge(phyB2)
Gene Details
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Functional Descriptions
- PHYB1 and not PhyB2 contributes significantly to the inhibition of mesocotyl elongation under red light, whereas PhyB2 and to a lesser extent PHYB1 mediate the photoperiod-dependent floral transition.
- Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize.
- We show that the highly similar PhyB1 and PhyB2 genes encode proteins with both overlapping and non-redundant functions that control seedling and mature plant traits.
- PhyB2 and to a lesser extent PHYB1 mediate the photoperiod-dependent floral transition.
- PHYB1 and PhyB2 regulate several aspects of seedling development, including mesocotyl elongation and chloroplast gene expression.
Functional Keywords
Literature and News
- Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize. DOI: 10.1111/j.1365-313X.2006.02962.x ; PMID: 17181778
- Breeding maize of ideal plant architecture for high-density planting tolerance through modulating shade avoidance response and beyond. DOI: 10.1111/jipb.13603 ; PMID: 38131117
Gene Resources
- NCBI ID: LOC100381811
- UniProt accessions: A0A317YJ19 , Q6XFQ2
- EMBL: AY234828 , CM000785
- EnsemblPlants: Zm00001eb396030_T001
- Gramene: Zm00001eb396030_T001
- KEGG: zma:100381811
- ExpressionAtlas: Zm00001eb396030
- InterPro: IPR000014 , IPR001294 , IPR003018 , IPR003594 , IPR003661 , IPR005467 , IPR012129 , IPR013515 , IPR013516 , IPR013654 , IPR013767 , IPR016132 , IPR029016 , IPR035965 , IPR036097 , IPR036890 , IPR043150
- PANTHER: PTHR47876 , PTHR47876:SF3
- SUPFAM: SSF47384 , SSF55781 , SSF55785 , SSF55874
- PROSITE: PS00245 , PS50046 , PS50109 , PS50112
- Gene3D: 1.10.287.130 , 3.30.450.20 , 3.30.450.270 , 3.30.450.40 , 3.30.565.10
- OrthoDB: Q6XFQ2
- SMR: Q6XFQ2
- CDD: cd00082 , cd00130
Sequences
cDNA Sequence
- >Zm00001eb396030_T001
TGAAGCAAAGCTAAGGTATCGGACGAACACATAGGGGGCGAGCGAGCCGACTGACGAGCACAAGACCGGCGGACGGGGCCGCCTAATCCAGTGAGAGCTCCCCCAAGCGCCATGGCGTCGGACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGTCACGCGCACCACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGAGGAGGTGGCGGGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAACCTAGACGCGCGGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAGTCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCACGCATCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTGTCGCCGCACCACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGTGCCGACGCACGCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCCGCGCGCGAGATATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGCACCGAGGACCCCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGCGTGCGAATGATCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTGTCGCAGCAGCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGTGGTGACGACGAGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCACCAGCTGGCATCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCTGCACTGTATTATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATTAAGGATATTATCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTTGCTGATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATGGCGGTGGCTTATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGAGATGCTGCAGAGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGGAATGCAAAGATTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAATCTAAGGGTGCAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAATTTATCAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCCCCAATTTTCGCATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAACTTACAGGATGGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGAAATTGTTGCCGACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAATGCTATAGAAGGACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGAGCCTTTTGTTTCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGATGCCAGTCTCAAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAACAATGTCATTGTTGAGGGAGAGGGATTTACAACTTATTCGAGATATCCCTGATGAAATCAAGGATGCATCAGCATATGGTGATCAATTTAGAATCCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGCACAGTCTGCTCCATCCGAGAATGGCTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTATGACGGAACAGATACAGAGCTTTTCATCTTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCCGCTGACATTGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACCCAAGAAGGCGTAGGACTAAGCACATGCAGGAAAATCCTCAAATTGATGGGCGGCGAGGTCCAATACATCAGGGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTTGAGCTGCCCCAACCTCGTCTAGCAGCTGGTAGAGAAAATCAGCTGATATGTTAAGATCTGCGCTGACACCACCTAACTTCTAGGTCGATTAGGTAACTTAGGTGGTGTTTGTTTGGGATTATAATCTGCCTAAATTATATAATCAGTGTTAGTTCAAAATAAGGTAGATTATATAATCTGGTCAGATTATAATCCCAAACAAATAGACCCTTAGCTCCCTGATAAGAGGGTGCCTAATTTACAAGAAGCCTGGAAACAAATGAATGCTGCCATGGCAATTCAATGGTTGAGTGTTGATGAGGAGGCTGTTTTTCGGTGCGCCGCTGTAAGTTTGGGTATCCATGCTGTGGTTTCAAGATCAGAGTTCATGGCAGATAGTTATGTACACAGGCGGCAAATTTGGTTCTTAGCTTAGGTTGATGACCAGTTTCACTTAGTACATCTTATATGTATACTAGGTGGATGCCCGTGCGTTGCAACGGGAAGATAAAATATCACGATAACTCATGTACAAATATGTTATAATATTATAGAAAAAGGTTACAAATGTGTTATAATGTTTAGG
CDS Sequence
- >Zm00001eb396030_T001
ATGGCGTCGGACAGTCGCCCCCCCAAGCGCTCCCCCTCCGCGCGACGCGTGGCGCCGCGTCACGCGCACCACCACCACTCGCAGTCGTCGGGCGGGAGCACGTCCCGCGCAGGCGCGGGAGGAGGTGGCGGGGGCGCTGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCTCAGTACAACCTAGACGCGCGGCTCCACGCGGTGTTCGAGCAGTCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAGTCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCACGCATCCAGCGCGGCGGCCACATCCAGCCCTTGGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCTGAGAACGCCGCCGACCTGCTCGACCTGTCGCCGCACCACTCCGTTCCCTCGCTCGACTCCGTGGCGCTGCCCCCTGTTTCCCTTGGTGCCGACGCACGCCTCTACTTCTCCCCCTCGTCCGCGGTCCTGCTGGAGCGCGCCTTCGCCGCGCGCGAGATATCGCTGCTCAACCCGCTATGGATCCACTCCAGGGCCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCACGCACCGAGGACCCCGCTCTCTCCATCGCCGGCGCAGTCCAGTCCCAGAAACTCGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTCCTATGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACTGGTTACGACCGTGTCATGGTGTACAAGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCAGAGAGCCGGCGCGATAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGGTTCCTGTTCCAGCAGAACCGCGTGCGAATGATCGCAGACTGCCATGCCATCCCGGTGAGAGTCATACAAGATCCTGGGCTGTCGCAGCAGCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCGCACGGGTGCCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGTGGTGACGACGAGCGAACAGGTCGGGGTGCCATCTCCTCATCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTTTGCGAACTCAGACGCTATTGTGTGACATGCTACTGCGAGATTCACCAGCTGGCATCATCACGCAGAGCCCCAGCGTCATGGACCTTGTGAAGTGCGATGGGGCTGCACTGTATTATCGTGGGAAGTACTACCCATTGGGTGTCACTCCCACCGAGTCTCAGATTAAGGATATTATCGAGTGGTTGACGGTGTGTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTTGCTGATGCAGGCTACCTTGGTGCTGTTGCATTAGGGGATGCTGTGTGTGGAATGGCGGTGGCTTATATAACACCAAGTGATTACTTGTTTTGGTTTAGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAACATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCATCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGTCCTGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGAGATGCTGCAGAGGGCACTAGCAACTCAAAAGCCATTGTCAATGGACAACGTCAACTTGGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGCTCTGTAGCAAGAGAGATGGTTCGATTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGATGCATAAATGGGTGGAATGCAAAGATTGCCGAGTTGACAGGCCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATGTGATGATATAGTCGAAAAGCTACTCTCGCGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGCTGAAGACATTTGGGTCAGAGCAATCTAAGGGTGCAATATTTGTTATTGTCAATGCTTGTTCCAGCAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTTACAGGACAAAAGGTGGTCATGGATAAATTTATCAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGCTACCCCCAATTTTCGCATCAGATGAGAACACTTCTTGTTCAGAATGGAACACAGCCATGGAAAAACTTACAGGATGGTCTAGAGAGGAAGTTGTCGGTAAGTTTCTTATTGGAGAAGTGTTTGGAAATTGTTGCCGACTCAAGGGCCCAGATGCATTGACAAAGTTCATGGTTGTCATTCACAATGCTATAGAAGGACATGATTCTGAGAAGTTCCCTTTTTCATTTTTCGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACGGCCAACACAAGGAGCAAAATGGATGGTAAATCTATTGGAGCCTTTTGTTTCTTGCAGATTGCAAGCGCTGAAATACAGCAGGCATTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTATGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGGTTTACCAACTCTCTATTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGATGCCAGTCTCAAAAGTATTGAGGATGGCTCTTTGGTGCTTGAGAAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAACAATGTCATTGTTGAGGGAGAGGGATTTACAACTTATTCGAGATATCCCTGATGAAATCAAGGATGCATCAGCATATGGTGATCAATTTAGAATCCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGCACAGTCTGCTCCATCCGAGAATGGCTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTATGACGGAACAGATACAGAGCTTTTCATCTTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCCGCTGACATTGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACCCAAGAAGGCGTAGGACTAAGCACATGCAGGAAAATCCTCAAATTGATGGGCGGCGAGGTCCAATACATCAGGGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTTGAGCTGCCCCAACCTCGTCTAGCAGCTGGTAGAGAAAATCAGCTGATATGTTAA
Protein Sequence
- >Zm00001eb396030_P001
MASDSRPPKRSPSARRVAPRHAHHHHSQSSGGSTSRAGAGGGGGGAAATESVSKAVAQYNLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPLGCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSVALPPVSLGADARLYFSPSSAVLLERAFAAREISLLNPLWIHSRASSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHEDEHGEVVAESRRDNLEPYLGLHYPATDIPQASRFLFQQNRVRMIADCHAIPVRVIQDPGLSQQLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIISSGGDDERTGRGAISSSMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPAGIITQSPSVMDLVKCDGAALYYRGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAVALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLSWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQRQLGELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKECDDIVEKLLSRALRGEEDKNVEIKLKTFGSEQSKGAIFVIVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLLPPIFASDENTSCSEWNTAMEKLTGWSREEVVGKFLIGEVFGNCCRLKGPDALTKFMVVIHNAIEGHDSEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLQMTDLNDDQRQFLETSSACEKQMSKIVKDASLKSIEDGSLVLEKSEFSLGDVMNAVVSQTMSLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMAQSAPSENGWVEIQVRPNVKQNYDGTDTELFIFRFACPGEGLPADIVQDMFSNSQWSTQEGVGLSTCRKILKLMGGEVQYIRESERSFFLIVLELPQPRLAAGRENQLIC