Information report for PhyB1;pge(phyB1)
Gene Details
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Functional Descriptions
- PhyB1 and not PHYB2 contributes significantly to the inhibition of mesocotyl elongation under red light, whereas PHYB2 and to a lesser extent PhyB1 mediate the photoperiod-dependent floral transition.
- Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize.
- We show that the highly similar PhyB1 and PhyB2 genes encode proteins with both overlapping and non-redundant functions that control seedling and mature plant traits.
- PHYB2 and to a lesser extent PhyB1 mediate the photoperiod-dependent floral transition.
- PhyB1 and PHYB2 regulate several aspects of seedling development, including mesocotyl elongation and chloroplast gene expression.
Functional Keywords
Literature and News
- Subfunctionalization of PhyB1 and PhyB2 in the control of seedling and mature plant traits in maize. DOI: 10.1111/j.1365-313X.2006.02962.x ; PMID: 17181778
- Breeding maize of ideal plant architecture for high-density planting tolerance through modulating shade avoidance response and beyond. DOI: 10.1111/jipb.13603 ; PMID: 38131117
Gene Resources
- NCBI ID: LOC100383702
- UniProt accessions: Q1A5Y4 , Q1A5Y5
- EMBL: DQ307575
- AlphaFoldDB: Q1A5Y5
- InterPro: IPR013654 , IPR035965
- SUPFAM: SSF55785
- Gene3D: 3.30.450.20
Sequences
cDNA Sequence
- >Zm00001eb014850_T001
CTTTCAAGTTTGGAGTTCGTCGTCGTCCCCAGCGTGACTGCGCGAGTGCTATCCATTCCAAACCTGAAACCACTGCGGCCCAACCCGGCAACCCCGATCCCCACTTCCCCAGTACCATCCCTATCCCAGCCACGCCATCGTCATCGCCTTGCGCGCAATATCCTTGGCTCCACGCCCCAGTAAGCGACCAGTGACAGTGAGAGCGGTGAAGCAAACCAAAGCAAAGCTATCGGAAGAACCTCAGTCGAGGGGGCGAGCGAGCCGACGAGACGACTGACGAGCGCACAAGACCGGACGGGGCCGCCTAATCCAGAGAGAGCCCCAGGTCTCCCCCAACCCCGCCATGGCGTCGGGCAGCCGCGCCACGCCCACGCGCTCCCCCTCCTCCGCGCGGCCCGAGGCGCCGCGTCACGCGCACCACCACCACCACTCCCAGTCGTCGGGCGGGAGCACGTCCCGCGCGGGCGGGGGAGCCGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCCCAGTACACCCTAGACGCGCGCCTACACGCGGTGTTCGAGCAATCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAATCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCCCGCATCCAGCGCGGCGGCCACATCCAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCCGAGAACTCCCCCGACCTGCTCGACCTGTCGCCTCACCACTCCGTTCCCTCGCTGGACTCCTCTGCGCCGCCCCACGTTTCCCTGGGTGCCGACGCGCGCCTCCTCTTCTCCCCCTCGTCCGCGGTCCTCCTAGAGCGCGCCTTCGCCGCGCGCGAGATCTCGCTGCTCAACCCGATATGGATCCACTCCAGGGTCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAGGACCCCGCTCTCTCCATCGCCGGTGCAGTCCAGTCCCAGAAACTGGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTTCTCTGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACGGGTTATGACCGTGTCATGGTGTACAGGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCCGAGAGCCGGCGCGACAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGCTTCCTGTTCCGGCAGAACCGCGTGCGAATGATTGCCGATTGCCATGCCACCCCGGTGAGAGTTATTCAAGATCCTGGGCTGTCGCAGCCTCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCACACGGGTGTCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGCGGTGACGATGAGCAAACAGGTCGGGGTGGCATCTCGTCGGCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTCTGCGAACTCAGACGCTATTGTGTGACATGCTACTACGAGATTCACCAACTGGCATCGTCACGCAGAGCCCCAGCATCATGGACCTTGTGAAGTGCGACGGGGCTGCACTGTATTATCATGGGAAATACTATCCATTGGGTGTCACTCCCACTGAGTCTCAGATTAAGGATATCATCGAGTGGTTGACGGTGTTTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTGGCTGATGCAGGCTACCTTGGTGCTGCTGCACTAGGGGAGGCTGTGTGTGGAATGGCGGTGGCTTATATTACACCGAGTGATTACTTGTTTTGGTTTCGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCGTCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGCCATGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGGGATGCTGCAGAGGGCACCAACAACTCAAAAGCCATTGTCAATGGACAAGTTCAGCTTCGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGTTCCGTAGCAAGAGAGATGGTTCGGTTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGGTGTATAAATGGTTGGAATGCAAAGATTGCTGAGTTGACAGGGCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATCTGAGGCGACAGTTGAAAAACTACTCTCACGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGTTGAAGACATTTGGGTCAGAGCAATCTAAGGGACCAATATTTGTTGTTGTCAATGCTTGTTCTAGTAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTGTTAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGATACCACCAATTTTTGCATCAGATGAGAACACTTCTTGTTCAGAATGGAATACAGCCATGGAAAAACTTACAGGATGGTCGAGAGGTGAAGTTGTTGGTAAGTTTCTTATTGGAGAGGTGTTTGGAAATTGTTGTCGACTCAAGGGCCCAGATGCATTGACAAAATTCATGGTTATTATTCACAACGCTATAGGAGGACAGGATTATGAGAAGTTCCCTTTTTCATTTTTTGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACCGCCAATACAAGGAGCAAAATGGATGGTAAATCCATTGGAGCCTTTTGTTTCCTGCAGATTGCAAGCACTGAAATACAGCAAGCCTTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTACGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGATTTACCAACTCTCTGTTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGACGCCAGTCTCCAAAGTATCGAGGACGGCTCTTTGGTGCTTGAGCAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAGCAATGTTATTGTTGAGAGAGAGGGATTTACAACTTATTCGGGACATCCCTGATGAAATCAAGGATGCGTCAGCGTATGGTGATCAATGTAGAATTCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGTGCGGTCTGCTCCATCCGAGAATGGTTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTCTGATGGAACAAATACAGAACTTTTCATATTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCTGCTGACGTCGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACACAAGAAGGCGTAGGACTAAGCACATGCAGGAAGATCCTCAAATTGATGGGTGGCGAGGTCCAATACATCAGAGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTCGAGCAGCCCCAACCTCGTCCAGCAGCTGGTAGAGAAATCGTCTGATATGTTAAGATCCGTGCTGACCCCACCTAACTTTCTCGGCCGATTACATAACTTAGCCCCCTGATAAGAGGGTGCCTAATTTACGAGAAGCCTGGAAACAAATCAAAGCTGCCATGGCAATTCAATGACTGAAGTGTTGTTGATGAGGCTGTTTTCAGTGCACCGCTATCCATGGCCATGCTGTGGTTTCAAGACCAGAGTTGGCGGATAGTTACGTACACAGGCGGCAAATGTGTCTCTTAGCCGCTGTTTAAGTGCACCGCTGTAAGTTTGGGTGTCCATGTCCATGCTGTGGTTTCAAGATCAGAGTCCATGGCGGATAGTTATGTACACAAGCGACAAACGTGGTTCTTAGCTTAGGTTCATGACCAGTTCCACGTAGTACATATAGCTTATATGTATATATACAATCTATTTTTTACTATGCATAAGGAGTTGTTTCAGCTTACACGGTTGTATGTTATAGTCCTTTCTAGGTCTACTACATCCTAATCTAGATCTGGTTCCTCTGGAATGTTGGCACCACCGCTCTGTATTTTGCGGCGAAGGTTTGAGTTTGGCCTACCTCGGTTTATTTCATTCTCAGACCTTAATGTAAAAGCTTTGACAGTTGACACTGGGTGTGTCCTTTGTAGAGAAAGAAAACCTTTTCTTTTAAAAATCGTGTTCTATGTGTTGTGG
CDS Sequence
- >Zm00001eb014850_T001
ATGGCGTCGGGCAGCCGCGCCACGCCCACGCGCTCCCCCTCCTCCGCGCGGCCCGAGGCGCCGCGTCACGCGCACCACCACCACCACTCCCAGTCGTCGGGCGGGAGCACGTCCCGCGCGGGCGGGGGAGCCGCGGCCACGGAGTCGGTCTCCAAGGCCGTCGCCCAGTACACCCTAGACGCGCGCCTACACGCGGTGTTCGAGCAATCGGGCGCGTCGGGCCGCAGCTTCGACTACTCCCAATCGCTGCGCGCGCCGCCCACGCCGTCCTCCGAGCAGCAGATCGCCGCCTACCTCTCCCGCATCCAGCGCGGCGGCCACATCCAGCCCTTCGGCTGCACGCTCGCCGTCGCCGACGACTCCTCCTTCCGCCTCCTCGCCTTCTCCGAGAACTCCCCCGACCTGCTCGACCTGTCGCCTCACCACTCCGTTCCCTCGCTGGACTCCTCTGCGCCGCCCCACGTTTCCCTGGGTGCCGACGCGCGCCTCCTCTTCTCCCCCTCGTCCGCGGTCCTCCTAGAGCGCGCCTTCGCCGCGCGCGAGATCTCGCTGCTCAACCCGATATGGATCCACTCCAGGGTCTCCTCCAAGCCGTTCTACGCCATCCTCCACCGCATCGACGTCGGCGTCGTCATCGACCTCGAGCCCGCCCGCACCGAGGACCCCGCTCTCTCCATCGCCGGTGCAGTCCAGTCCCAGAAACTGGCGGTCCGCGCCATCTCCCGCCTCCAGGCGCTACCCGGCGGGGACGTCAAGCTTCTCTGCGACACAGTCGTGGAGCATGTTCGCGAGCTCACGGGTTATGACCGTGTCATGGTGTACAGGTTCCATGAAGACGAGCACGGGGAAGTTGTCGCCGAGAGCCGGCGCGACAACCTTGAGCCTTACCTCGGATTGCATTATCCCGCCACAGATATCCCCCAGGCGTCGCGCTTCCTGTTCCGGCAGAACCGCGTGCGAATGATTGCCGATTGCCATGCCACCCCGGTGAGAGTTATTCAAGATCCTGGGCTGTCGCAGCCTCTGTGTTTGGTAGGCTCCACGCTACGCGCTCCACACGGGTGTCATGCACAGTACATGGCGAACATGGGGTCAATTGCGTCGCTTGTTATGGCAGTCATCATTAGCAGTGGCGGTGACGATGAGCAAACAGGTCGGGGTGGCATCTCGTCGGCAATGAAGTTGTGGGGGTTAGTGGTGTGCCACCATACATCACCACGGTGTATCCCTTTTCCATTGAGGTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGTTGCAGCTCAACATGGAGTTGCAGCTTGCGCACCAGCTGTCAGAGAAGCACATTCTGCGAACTCAGACGCTATTGTGTGACATGCTACTACGAGATTCACCAACTGGCATCGTCACGCAGAGCCCCAGCATCATGGACCTTGTGAAGTGCGACGGGGCTGCACTGTATTATCATGGGAAATACTATCCATTGGGTGTCACTCCCACTGAGTCTCAGATTAAGGATATCATCGAGTGGTTGACGGTGTTTCATGGGGACTCAACAGGGCTCAGCACAGATAGCCTGGCTGATGCAGGCTACCTTGGTGCTGCTGCACTAGGGGAGGCTGTGTGTGGAATGGCGGTGGCTTATATTACACCGAGTGATTACTTGTTTTGGTTTCGGTCACACACAGCTAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCTGAGGATAAGGATGATGGTCAGAGGATGCACCCACGGTCGTCATTCAAGGCATTTCTTGAAGTGGTTAAAAGCAGAAGCCTGCCATGGGAGAATGCAGAAATGGACGCAATACATTCCTTGCAGCTCATATTGCGTGACTCCTTCAGGGATGCTGCAGAGGGCACCAACAACTCAAAAGCCATTGTCAATGGACAAGTTCAGCTTCGGGAGCTAGAATTGCGGGGGATAAATGAGCTTAGTTCCGTAGCAAGAGAGATGGTTCGGTTGATAGAGACAGCAACAGTACCCATATTTGCAGTAGATACTGATGGGTGTATAAATGGTTGGAATGCAAAGATTGCTGAGTTGACAGGGCTTTCAGTTGAGGAGGCAATGGGCAAATCTCTGGTAAATGATCTTATCTTCAAGGAATCTGAGGCGACAGTTGAAAAACTACTCTCACGAGCTTTAAGAGGTGAGGAAGACAAAAATGTGGAGATAAAGTTGAAGACATTTGGGTCAGAGCAATCTAAGGGACCAATATTTGTTGTTGTCAATGCTTGTTCTAGTAGAGATTACACACAAAATATTGTTGGTGTCTGTTTTGTTGGACAAGATGTCACAGGACAAAAGGTGGTCATGGATAAATTTGTTAACATACAAGGGGACTACAAAGCTATTGTACACAATCCTAATCCTCTGATACCACCAATTTTTGCATCAGATGAGAACACTTCTTGTTCAGAATGGAATACAGCCATGGAAAAACTTACAGGATGGTCGAGAGGTGAAGTTGTTGGTAAGTTTCTTATTGGAGAGGTGTTTGGAAATTGTTGTCGACTCAAGGGCCCAGATGCATTGACAAAATTCATGGTTATTATTCACAACGCTATAGGAGGACAGGATTATGAGAAGTTCCCTTTTTCATTTTTTGACAAGAATGGAAAGTATGTGCAGGCCTTATTGACCGCCAATACAAGGAGCAAAATGGATGGTAAATCCATTGGAGCCTTTTGTTTCCTGCAGATTGCAAGCACTGAAATACAGCAAGCCTTTGAGATTCAGAGACAACAAGAAAAGAAGTGTTACGCAAGGATGAAAGAATTGGCCTATATTTGCCAGGAGATAAAGAATCCTCTTAGTGGCATCCGATTTACCAACTCTCTGTTGCAGATGACTGATTTAAATGATGACCAGAGGCAGTTCCTTGAAACTAGCTCTGCTTGTGAGAAACAGATGTCCAAGATTGTTAAGGACGCCAGTCTCCAAAGTATCGAGGACGGCTCTTTGGTGCTTGAGCAAAGTGAGTTTTCTCTTGGAGACGTTATGAATGCTGTTGTCAGCCAAGCAATGTTATTGTTGAGAGAGAGGGATTTACAACTTATTCGGGACATCCCTGATGAAATCAAGGATGCGTCAGCGTATGGTGATCAATGTAGAATTCAACAAGTTTTGGCTGACTTCTTGCTAAGCATGGTGCGGTCTGCTCCATCCGAGAATGGTTGGGTAGAAATACAAGTCAGACCAAATGTAAAACAGAATTCTGATGGAACAAATACAGAACTTTTCATATTCAGGTTTGCCTGCCCTGGTGAGGGCCTCCCTGCTGACGTCGTCCAGGATATGTTCAGCAATTCCCAATGGTCAACACAAGAAGGCGTAGGACTAAGCACATGCAGGAAGATCCTCAAATTGATGGGTGGCGAGGTCCAATACATCAGAGAGTCAGAGCGGAGTTTCTTCCTCATCGTCCTCGAGCAGCCCCAACCTCGTCCAGCAGCTGGTAGAGAAATCGTCTGA
Protein Sequence
- >Zm00001eb014850_P001
MASGSRATPTRSPSSARPEAPRHAHHHHHSQSSGGSTSRAGGGAAATESVSKAVAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGCTLAVADDSSFRLLAFSENSPDLLDLSPHHSVPSLDSSAPPHVSLGADARLLFSPSSAVLLERAFAAREISLLNPIWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRDNLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVFHGDSTGLSTDSLADAGYLGAAALGEAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTNNSKAIVNGQVQLRELELRGINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEATVEKLLSRALRGEEDKNVEIKLKTFGSEQSKGPIFVVVNACSSRDYTQNIVGVCFVGQDVTGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKFLIGEVFGNCCRLKGPDALTKFMVIIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSKMDGKSIGAFCFLQIASTEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSLLQMTDLNDDQRQFLETSSACEKQMSKIVKDASLQSIEDGSLVLEQSEFSLGDVMNAVVSQAMLLLRERDLQLIRDIPDEIKDASAYGDQCRIQQVLADFLLSMVRSAPSENGWVEIQVRPNVKQNSDGTNTELFIFRFACPGEGLPADVVQDMFSNSQWSTQEGVGLSTCRKILKLMGGEVQYIRESERSFFLIVLEQPQPRPAAGREIV