Gene Details:

Functional Descriptions:

  • NOT1 encodes a protein that has 92% amino acid similarity to TGA1 and that is recognized by the TGA1 antibody.
  • Genetic mapping and phenotypic data show that tga1, without a contribution from NOT1, controls the difference in covered vs. naked kernels.
  • Glume architecture phenotypes of isogenic lines with different genotypes at tga1 and NOT1.
  • NOT1 regulates the development of strut roots in the first four to six segments of the stem.
  • Glume length was significantly increased when TGA1/NOT1 were knocked down/out.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Zm00001eb175190_T002
    TATCTATACACCGCCCGCACCTTCCATTCCTCCTCCTCCGAAGCAGCAGGCAGCAGCTGCATCGCACCTCACACCTCTCGTGTCCATCGATCCAGCCGCCCGCCGCAGCTGCAGCTCTCACTGTTGCTGTGCCACCTCCTCGTCGCCTGTAGTGTCGACAGAGAAACGCCCGCTGAATGAGAGGGAAGGAACGGAAGCTGCAGCGGGCGCGCGAGTGCAAGGACTAGGACTAGCGGTTGCAACGTCGGCGCGCGCGCGCGTGCGGCGTACGTCGGGCATGGATTGGGATCTCAAGGCGGTGGGCGCGTGGGACCTCGCGGAGCTGGAGCAGGACCACGCGGCCGCCACGGCAGCAGCGGGGCCGTCCGAGGGCCACGCCACCGATACTGCCGCGGCGGGCACGGGCACGGGGACGGGGACGGAGAGCCGCCCGCCCGGAGCAGGGGCACCCGCCGAGTGCTCTGTGGACTTGAAGCTGGGCGGGATGGGCGAGTGCGAGCTCGGCGCGGGCGCGGCGACGGCCTGCAGGGAGAGGGAGGCCGCGGCGGGGGCGACGAAGCGGCCGCGCCCCGCCGGGCAGCAGCAGCAGCAGTGCCCGTCGTGCGCGGTGGATGGGTGCAGAGCGGACCTGAGCAAGTGCCGCGACTACCACCGGCGGCACAAGGTGTGCGAGGCGCACTCCAAGACCCCCGTCGTCGTCGTGGCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGACTTCGTAGCTTTCTTTATCCGTATGGAGAACGAAACTGCTGTACAGTATACCATCGTGTGGTCCAAGGTTTGACAGGTCTCACAGTATTTTCCTGTCTCTAAGCGCTGATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAGTCGTCGTCACTTGTCAGCAGCCGCTGCGTTCTCTCATCTTTCGCGCTTCAGACGATCTGGTAGGGAGATACTGGCTTTAGTGATCACTGATCAGCATTGATCCCCCCCCCCCCCCCCCCACTTTTTGTCGAATCGGCTCTGCTAGCCAGCATTATTGTGGACATTTTTTGAATCGTCTCTAGAATAGTCGCCGATGCGTGCCTTAGCAGCGCACAGACATTGTTAGTTTGGTCGCAACGATCAATGGCATGTTTGCTCACTTTACATTCCTTCTGTTTAGCAAGAGACAACTGCTCTGGTCGGTATTCAGGAATAGATCAAGAGCCATTGCAAAAGGGGTAAAACCTCACGTATAGAACACCTCCAAAAAAAATCATTGACCCAACGTTGTATTGTATCCTAGCCTAGCATCGTGCATCAGAGCAGGGGGATGTTGGATTTCGTGACCACGAGCTTTCAAAGATCGGAGATGCGTTTCCCGCTGATGAAATCCACCACTTTGGTGACTGCCAGCTCCAGTGCCGTCGTCACGGCAATCAGGTTCTGCAGAAACTCCTCATACGTTGGCTTCACCCCATCCACGATATCAGTCACAGCTTTCACAAAGATCGCTGGTGTCGAGAACATGTCAGCGACATATGCTACAGCAG
  • >Zm00001eb175190_T003
    TATCTATACACCGCCCGCACCTTCCATTCCTCCTCCTCCGAAGCAGCAGGCAGCAGCTGCATCGCACCTCACACCTCTCGTGTCCATCGATCCAGCCGCCCGCCGCAGCTGCAGCTCTCACTGTTGCTGTGCCACCTCCTCGTCGCCTGTAGTGTCGACAGAGAAACGCCCGCTGAATGAGAGGGAAGGAACGGAAGCTGCAGCGGGCGCGCGAGTGCAAGGACTAGGACTAGCGGTTGCAACGTCGGCGCGCGCGCGCGTGCGGCGTACGTCGGGCATGGATTGGGATCTCAAGGCGGTGGGCGCGTGGGACCTCGCGGAGCTGGAGCAGGACCACGCGGCCGCCACGGCAGCAGCGGGGCCGTCCGAGGGCCACGCCACCGATACTGCCGCGGCGGGCACGGGCACGGGGACGGGGACGGAGAGCCGCCCGCCCGGAGCAGGGGCACCCGCCGAGTGCTCTGTGGACTTGAAGCTGGGCGGGATGGGCGAGTGCGAGCTCGGCGCGGGCGCGGCGACGGCCTGCAGGGAGAGGGAGGCCGCGGCGGGGGCGACGAAGCGGCCGCGCCCCGCCGGGCAGCAGCAGCAGCAGTGCCCGTCGTGCGCGGTGGATGGGTGCAGAGCGGACCTGAGCAAGTGCCGCGACTACCACCGGCGGCACAAGGTGTGCGAGGCGCACTCCAAGACCCCCGTCGTCGTCGTGGCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGACTTCGTAGCTTTCTTTATCCGTATGGAGAACGAAACTGCTGTACAGTATACCATCGTGTGGTCCAAGGTTTGACAGGTCTCACAGTATTTTCCTGTCTCTAAGCGCTGATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAGTCGTCGTCACTTGTCAGCAGCCGCTGCGTTCTCTCATCTTTCGCGCTTCAGACGATCTGGTAGGGAGATACTGGCTTTAGTGATCACTGATCAGCATTGATCCCCCCCCCCCCCCCCCCACTTTTTGTCGAATCGGCTCTGCTAGCCAGCATTATTGTGGACATTTTTTGAATCGTCTCTAGAATAGTCGCCGATGCGTGCCTTAGCAGCGCACAGACATTGTTAGTTTGGTCGCAACGATCAATGGCATGTTTGCTCACTTTACATTCCTTCTGTTTAGCAAGAGACAACTGCTCTGGTCGGTATTCAGGAATAGATCAAGAGCCATTGCAAAAGGGGTAAAACCTCACGTATAGAACACCTCCAAAAAAAATCATTGACCCAACGTTGTATTGTATCCTAGCCTAGCATCGTGCATCAGAGCAGGGGGATGTTGGATTTCGTGACCACGAGCTTTCAAAGATCGGAGATGCGTTTCCCGCTGATGAAATCCACCACTTTGGTGACTGCCAGCTCCAGTGCCGTCGTCACGGCAATCAGGTTCTGCAGAAACTCCTCATACGTTGGCTTCACCCCATCCACGATATCAGTCACAGCTTTCACAAAGATCGCTGGTGTCGAGAACATGTCAGCGACATATGCTACAGCAG
  • >Zm00001eb175190_T001
    TATCTATACACCGCCCGCACCTTCCATTCCTCCTCCTCCGAAGCAGCAGGCAGCAGCTGCATCGCACCTCACACCTCTCGTGTCCATCGATCCAGCCGCCCGCCGCAGCTGCAGCTCTCACTGTTGCTGTGCCACCTCCTCGTCGCCTGTAGTGTCGACAGAGAAACGCCCGCTGAATGAGAGGGAAGGAACGGAAGCTGCAGCGGGCGCGCGAGTGCAAGGACTAGGACTAGCGGTTGCAACGTCGGCGCGCGCGCGCGTGCGGCGTACGTCGGGCATGGATTGGGATCTCAAGGCGGTGGGCGCGTGGGACCTCGCGGAGCTGGAGCAGGACCACGCGGCCGCCACGGCAGCAGCGGGGCCGTCCGAGGGCCACGCCACCGATACTGCCGCGGCGGGCACGGGCACGGGGACGGGGACGGAGAGCCGCCCGCCCGGAGCAGGGGCACCCGCCGAGTGCTCTGTGGACTTGAAGCTGGGCGGGATGGGCGAGTGCGAGCTCGGCGCGGGCGCGGCGACGGCCTGCAGGGAGAGGGAGGCCGCGGCGGGGGCGACGAAGCGGCCGCGCCCCGCCGGGCAGCAGCAGCAGCAGTGCCCGTCGTGCGCGGTGGATGGGTGCAGAGCGGACCTGAGCAAGTGCCGCGACTACCACCGGCGGCACAAGGTGTGCGAGGCGCACTCCAAGACCCCCGTCGTCGTCGTGGCCGGCCGCGAGATGCGCTTCTGCCAGCAGTGCAGCAGACTTCGTAGCTTTCTTTATCCGTATGGAGAACGAAACTGCTGTACAGTATACCATCGTGTGGTCCAAGGTTTGACAGGTCTCACAGTATTTTCCTGTCTCTAAGCGCTGATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAGTCGTCGTCACTTGTCAGCAGCCGCTGCGTTCTCTCATCTTTCGCGCTTCAGACGATCTGGTAGGGAGATACTGGCTTTAGTGATCACTGATCAGCATTGATCCCCCCCCCCCCCCCCCCACTTTTTGTCGAATCGGCTCTGCTAGCCAGCATTATTGTGGACATTTTTTGAATCGTCTCTAGAATAGTCGCCGATGCGTGCCTTAGCAGCGCACAGACATTGTTAGTTTGGTCGCAACGATCAATGGCATGTTTGCTCACTTTACATTCCTTCTGTTTAGCAAGAGACAACTGCTCTGGTCGGTATTCAGGAATAGATCAAGAGCCATTGCAAAAGGGGTAAAACCTCACGTATAGAACACCTCCAAAAAAAATCATTGACCCAACGTTGTATTGTATCCTAGCCTAGCATCGTGCATCAGAGCAGGGGGATGTTGGATTTCGTGACCACGAGCTTTCAAAGATCGGAGATGCGTTTCCCGCTGATGAAATCCACCACTTTGGTGACTGCCAGCTCCAGTGCCGTCGTCACGGCAATCAGGTTCTGCAGAAACTCCTCATACGTTGGCTTCACCCCATCCACGATATCAGTCACAGCTTTCACAAAGATCGCTGGTGTCGAGAACATGTCAGCGACATATGCTACAGCAG
CDS Sequence
  • >Zm00001eb175190_T002
    ATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAG
  • >Zm00001eb175190_T003
    ATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAG
  • >Zm00001eb175190_T001
    ATGGACGTACGATTCCATTTACTTGCGGAGTTCGACGCCGACAAGCGCAGCTGCAGAAAGCGTCTGGACGGCCATAATCGCCGCCGCAGGAAGCCACAGCCAGACACCATGGCTTCTGCTAGCTCTATCACAAGCCAGCAAGGCACACGATTCTCACCATTTGCGCCTCCAAGACTGGAGGCGAGCTGGCCGGGGGTGATGAAAACCGAGGAGAGTCCATATCGCATCACTCACCAAATCCATCTGGGCTCCAGCAGCAGCAGCAGGCAGCAGCATTTCGTGGGAGCCGCCACGTCTGCCTACGCCAAAGAAGGCCCGCGCTTCCCTTTCCTGCAGGAGGGCGAGATAAGCTTCGCCACCGGCGTGGTGTTGGAGCCGCCGGCGGCGGCTCCAGCGTGCCAGCCGCTCCTCAAGTCGGGAGCACCACCACCCGAGAGCAGCAGCGCCGGCGGCGGGAAGATGTTCTCCGATCAGGGGCTGACTCGCGTGCTCGACTCGGACTGTGCTCTCTCTCTTCTGTCAGCGCCGGCCAACTACTCCGGCATCGACGTCAGCAGGATGGTCCGCCCGACTGAACACGTCCCCATGGCCCAGCAGCTCGTGGTCTCGGGCCTGCAGTTCGGCAGCGCGTCGTGGTTCCCGCGCCCCCAGGCTTCCACGGGCGGCTCCTTCGTCTCATCCTGCCCCGCCGTGCAGGTGGAGGGCGAGCAGCAGCTGAACGCCGTGCTGGGCCCCAACGACAGCGAGGTGAGCATGAACTACGGCGGGATGTTCCACGTCGGCGGCGGCAGCGGCGGCGGCGAGGGCTCCTCGGACGGCGGCACCTCGTCGTCGATGCCCTTCTCGTGGCAGTAG
Protein Sequence
  • >Zm00001eb175190_P002
    MDVRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDTMASASSITSQQGTRFSPFAPPRLEASWPGVMKTEESPYRITHQIHLGSSSSSRQQHFVGAATSAYAKEGPRFPFLQEGEISFATGVVLEPPAAAPACQPLLKSGAPPPESSSAGGGKMFSDQGLTRVLDSDCALSLLSAPANYSGIDVSRMVRPTEHVPMAQQLVVSGLQFGSASWFPRPQASTGGSFVSSCPAVQVEGEQQLNAVLGPNDSEVSMNYGGMFHVGGGSGGGEGSSDGGTSSSMPFSWQ
  • >Zm00001eb175190_P003
    MDVRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDTMASASSITSQQGTRFSPFAPPRLEASWPGVMKTEESPYRITHQIHLGSSSSSRQQHFVGAATSAYAKEGPRFPFLQEGEISFATGVVLEPPAAAPACQPLLKSGAPPPESSSAGGGKMFSDQGLTRVLDSDCALSLLSAPANYSGIDVSRMVRPTEHVPMAQQLVVSGLQFGSASWFPRPQASTGGSFVSSCPAVQVEGEQQLNAVLGPNDSEVSMNYGGMFHVGGGSGGGEGSSDGGTSSSMPFSWQ
  • >Zm00001eb175190_P001
    MDVRFHLLAEFDADKRSCRKRLDGHNRRRRKPQPDTMASASSITSQQGTRFSPFAPPRLEASWPGVMKTEESPYRITHQIHLGSSSSSRQQHFVGAATSAYAKEGPRFPFLQEGEISFATGVVLEPPAAAPACQPLLKSGAPPPESSSAGGGKMFSDQGLTRVLDSDCALSLLSAPANYSGIDVSRMVRPTEHVPMAQQLVVSGLQFGSASWFPRPQASTGGSFVSSCPAVQVEGEQQLNAVLGPNDSEVSMNYGGMFHVGGGSGGGEGSSDGGTSSSMPFSWQ

Source: Genetic information comes from the article