Gene Details:
- Gene ID: Zm00001eb177560
- Gene Symbol: HDA108
- Gene Name: histone deacetylase
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- The newly isolated HDA108/HDA108 insertional mutant exhibited many developmental defects: significant reduction in plant height, alterations of shoot and leaf development, and alterations of inflorescence patterning and fertility.
- Zea mays HDA108 belongs to the Rpd3/HDA1 HDAC family and is ubiquitously expressed during development.
- HDA108 is directly involved in regulation of maize development, fertility, and epigenetic regulation of genome activity.
- HDA108 is involved in plant development and epigenetic regulation of genome activity.
Function-related keywords:
- leaf , development , leaf-development , shoot , plant-development , fertility , inflorescence , height , plant-height , inflorescence-development , leaf-patterning
Literature:
- Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing by HISTONE DEACETYLASE 108. DOI: 10.1534/genetics.117.300625 ; PMID: 29382649
Related News:
Gene Resources:
- NCBI ID: HDA108
- UniProt accessions: A0A1D6Q029 , A0A1D6Q033 , B4G0J5 , Q8W509
Sequences:
cDNA Sequence
- >Zm00001eb177560_T001
GCCTAAACCCCGAAATTATAAAGAAAACCGCCTCGGCCGCAACTTGACTATCTTTGTGAGGACCTTCAACCATCTCAGGCGGAATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAGAAGTTTCAGAAGTGCCCCCAAAGTTACTGAGTTGTGAATGGGATCGTCGACATGCATGTTGAAGAGTGGGGACGCATCTGAACCTGTCCGTGCTGATATCTGCCGCTGTGCATCTGTAACAGACTGAACGTTTTGCTGGTTCCAGCTTTCCTGCGTGTTGGTAACTAGACTAGATATATGGCCCTTTGGTGGGTCCCAAACTGTTGAGCTGGAGAAATGAAGTGATTATTCTCGCATGATTTTGTAGCATGCATGTAATCATTACCCATTAGTTCATTAGGCTATCAACAGTAGTTTACTCATCCCCATATTCAAACTTCACTATGTGCGC - >Zm00001eb177560_T002
GCCTAAACCCCGAAATTATAAAGAAAACCGCCTCGGCCGCAACTTGACTATCTTTGTGAGGACCTTCAACCATCTCAGGCGGAATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAGAAGTTTCAGAAGTGCCCCCAAAGTTACTGAGTTGTGAATGGGATCGTCGACATGCATGTTGAAGAGTGGGGACGCATCTGAACCTGTCCGTGCTGATATCTGCCGCTGTGCATCTGTAACAGACTGAACGTTTTGCTGGTTCCAGCTTTCCTGCGTGTTGGTAACTAGACTAGATATATGGCCCTTTGGTGGGTCCCAAACTGTTGAGCTGGAGAAATGAAGTGATTATTCTCGCATGATTTTGTAGCATGCATGTAATCATTACCCATTAGTTCATTAGGCTATCAACAGTAGTTTACTCATCCCCATATTCAAACTTCACTATGTGCGC
CDS Sequence
- >Zm00001eb177560_T001
ATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAG - >Zm00001eb177560_T002
ATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAG
Protein Sequence
- >Zm00001eb177560_P001
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPGVLDPRAIKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVPLSDGIDDTTFRGLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRLWSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKDDL - >Zm00001eb177560_P002
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPGVLDPRAIKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVPLSDGIDDTTFRGLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRLWSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKDDL
Source: Genetic information comes from the article