Information report for HDA108
Gene Details
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Functional Descriptions
- The newly isolated HDA108/HDA108 insertional mutant exhibited many developmental defects: significant reduction in plant height, alterations of shoot and leaf development, and alterations of inflorescence patterning and fertility.
- Zea mays HDA108 belongs to the Rpd3/HDA1 HDAC family and is ubiquitously expressed during development.
- HDA108 is directly involved in regulation of maize development, fertility, and epigenetic regulation of genome activity.
- HDA108 is involved in plant development and epigenetic regulation of genome activity.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: HDA108
- UniProt accessions: A0A1D6Q029 , A0A1D6Q033 , B4G0J5 , Q8W509
- EMBL: AF440226
- AlphaFoldDB: Q8W509
- InterPro: IPR000286 , IPR003084 , IPR023696 , IPR023801 , IPR037138 , IPR050284
- PANTHER: PTHR10625 , PTHR10625:SF10
- SUPFAM: SSF52768
- Gene3D: 3.40.800.20
Sequences
cDNA Sequence
- >Zm00001eb177560_T001
GCCTAAACCCCGAAATTATAAAGAAAACCGCCTCGGCCGCAACTTGACTATCTTTGTGAGGACCTTCAACCATCTCAGGCGGAATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAGAAGTTTCAGAAGTGCCCCCAAAGTTACTGAGTTGTGAATGGGATCGTCGACATGCATGTTGAAGAGTGGGGACGCATCTGAACCTGTCCGTGCTGATATCTGCCGCTGTGCATCTGTAACAGACTGAACGTTTTGCTGGTTCCAGCTTTCCTGCGTGTTGGTAACTAGACTAGATATATGGCCCTTTGGTGGGTCCCAAACTGTTGAGCTGGAGAAATGAAGTGATTATTCTCGCATGATTTTGTAGCATGCATGTAATCATTACCCATTAGTTCATTAGGCTATCAACAGTAGTTTACTCATCCCCATATTCAAACTTCACTATGTGCGC - >Zm00001eb177560_T002
GCCTAAACCCCGAAATTATAAAGAAAACCGCCTCGGCCGCAACTTGACTATCTTTGTGAGGACCTTCAACCATCTCAGGCGGAATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAGAAGTTTCAGAAGTGCCCCCAAAGTTACTGAGTTGTGAATGGGATCGTCGACATGCATGTTGAAGAGTGGGGACGCATCTGAACCTGTCCGTGCTGATATCTGCCGCTGTGCATCTGTAACAGACTGAACGTTTTGCTGGTTCCAGCTTTCCTGCGTGTTGGTAACTAGACTAGATATATGGCCCTTTGGTGGGTCCCAAACTGTTGAGCTGGAGAAATGAAGTGATTATTCTCGCATGATTTTGTAGCATGCATGTAATCATTACCCATTAGTTCATTAGGCTATCAACAGTAGTTTACTCATCCCCATATTCAAACTTCACTATGTGCGC
CDS Sequence
- >Zm00001eb177560_T001
ATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAG - >Zm00001eb177560_T002
ATGGCGGCTTCTGGTGAGGGCGCGTCGCTGCCGTCTCCGGCGGGCGGGGAGGATGCGCACCGCCGCCGCGTCAGCTATTTCTACGAGCCGTCGATCGGAGACTACTACTACGGGCAAGGTCACCCGATGAAGCCCCACCGCATCCGAATGGCGCACTCGCTGGTGGTCCACTACGGCCTCCACCGCCTCCTCGAGCTCTCCCGCCCCTACCCGGCCTCTGAGGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGCTTTCCTCGCGTCCGCCACCGGAAACCCGGGTGTCCTCGACCCGCGCGCCATTAAGCGCTTTAACGTCGGTGAGGACTGCCCCGTGTTCGACGGTCTCTTCCCCTTCTGCCAGGCCTCCGCTGGGGGAAGCATCGGCGCCGCCGTCAAGCTTAACCGCGGGGACGCCGACATCACCGTCAACTGGGCGGGCGGCCTCCACCACGCCAAGAAGAGCGAGGCCTCCGGGTTCTGCTACGTCAACGACATCGTCCTCGCCATCCTCGAGCTCCTCAAGTTCCACAGGCGTGTGCTATATGTAGACATTGATGTCCACCATGGAGATGGCGTGGAGGAGGCCTTCTTCACTACAAACCGAGTCATGACTGTTTCCTTTCACAAGTATGGGGATTTTTTCCCTGGTACTGGACATATCACTGACGTTGGGGCAGCCGAAGGGAAGCATTATGCTCTGAATGTTCCCCTGAGTGATGGTATCGATGACACCACCTTTCGTGGTCTGTTTCAATGCATCATTAAGAAAGTTATGGAGGTTTATCAGCCAGACGTGGTTGTCCTCCAATGCGGAGCTGACTCTTTGGCTGGAGACAGGTTAGGTTGCTTCAACCTGTCTGTGAAGGGTCATGCTGACTGCCTCCGTTTCCTTAGGTCGTACAATGTTCCTATGATGGTTTTAGGTGGTGGAGGTTACACCATCAGAAATGTTGCACGCTGCTGGTGCTACGAGACCGCAGTTGCTGTTGGAGTTGAACCTGATAACAAGCTGCCTTACAATGATTACTATGAGTACTTTGGCCCTGATTATACTCTTCATATCCAACCAAAAAGTGTTGAAAACCTGAATACCACAAAGGACTTGGAGAACATAAAGAACATGATATTGGAGAACCTGTCAAAGATAGAACATGTTCCCAGCACTCAATTCCATGACAGACCGTCAGACCCTGAAGCTCCAGAGGAGAAAGAGGAGGACATGGACAAGAGGCCACCTCAGCGCAGCAGATTATGGAGCGGAGGAGCTTACGACTCTGATACAGAGGATCCTGACAGCCTGAAAAGCGAGGGTAAAGACGTAACTGCTAACTTCCAGATGAAGGATGAACCAAAAGATGATCTGTAG
Protein Sequence
- >Zm00001eb177560_P001
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPGVLDPRAIKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVPLSDGIDDTTFRGLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRLWSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKDDL - >Zm00001eb177560_P002
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPGVLDPRAIKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVPLSDGIDDTTFRGLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYTLHIQPKSVENLNTTKDLENIKNMILENLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPPQRSRLWSGGAYDSDTEDPDSLKSEGKDVTANFQMKDEPKDDL