Gene Details:

Functional Descriptions:

  • We peformed candidated gene analysis (next section) and found that Flavanone 3-hydroxylase1 (FHT1) and Purple aleurone1 (Pr1) are the most likely underlying genes for hs2-1 and hs5-3, respectively.
  • FHT1 might have played an important role in driving the metabolic divergence in flavonoid subgroups, including flavanones, flavones, isoflavones, and flavonols, since maize domestication.
  • Pr1 and FHT1 Contributed to the Metabolic Divergence in the Flavonoid Pathway.
  • The cis-variant at FHT1 might have played an important role in driving the metabolic divergence in flavonoid subgroups, including flavanones, flavones, isoflavones, and flavonols, since maize domestication.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Zm00001eb067380_T002
    ACTAGCAAACATTAATAACGCAAGCGGCACTGTTGTCAGTGTCAGTGCACAGTAGATATACTGCTAGCTAGCTTACCTGGCAGCCAGTGCAACTGCACTGCACGTCTCCAATGCGCTGCTATTATAACGACGCGAACGCCGCGCAGGCCTTCCGTGGTATACAGCAGCAGAAGCAGCATCACGATCCCGGCCCGGCGGCGCGTACGTCGACGAGGAGGAGGAGGACGTACGTACGCAGAGCAGCTGCTGGCACCATGGCTCCCGTGAGCATCAGCGCTGTTCCGTTCCTCCCGACGGCGGCGGAGGGGGAGACGAAGCTGCGCGCGTCGTTCGTGCGCGAGGAGGACGAGCGCCCCAAGGTGCCGCACGACCGCTTCAGCGACGAGGTGCCGGTGGTGTCGCTCGAGGGCATCGACGGCGCGCGGCGGGCCGAGATCCGCGCGCGCGTGGCCGCGGCCTGCGAGGACTGGGGCATCTTCCAGGTGGTGGACCACGGCGTGGACGCCGCGCTCGTGGCCGACATGGCGCGCCTCGCGCGCGACTTCTTCGCGCTCCCGCCCGAGGACAAGCTCCGCTTCGACATGTCCGGCGGGAAGAAGGGCGGCTTCATCGTCTCCAGCCACCTCCAGGGGGAGGCGGTGCAGGACTGGCGTGAGATCGTGACCTACTTCTCGTACCCGGTGAAGGCCCGCGACTACTCCCGGTGGCCTGACAAGCCGGCGGCGTGGCGGGCGGTGGTGGAGCGGTACAGCGAGCAGCTGATGGCGCTGGCGTGCAGGCTCCTGGGCGTGCTCTCGGAGGCCATGGGCCTGGACACGGAGGCGCTGGCCAGGGCCTGCGTGGACATGGACCAGAAGGTGGTGGTCAACTTCTACCCGAGGTGCCCGCAGCCGGACCTCACGCTGGGGCTCAAGCGCCACACCGACCCCGGCACCATCACGCTGCTGCTGCAGGACCTCGTCGGCGGCCTCCAGGCCACGCGCGACGGCGGCCGGACCTGGATCACCGTGCAGCCCGTGGAGGGCGCCTTCGTCGTCAACCTCGGCGACCACGGCCACCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCGACGCGACGGTGTACCCGCTGGCCGTGCGCGACGGGGAGGCGCCCATACTGGACCATCCCATCACCTTCGCCGAGATGTACCGCCGCAAGATGGCCCGCGACATCGAGCTCGCCAGGCTCAAGAAGCAGGTCAAGGCCGACAAGAGTGCCAACAAGGAGTTCGCCGACTCCAAGCCTCTCGACGCCATTCTTGCCTGATATGGTAGGGGGGGCGCGACTACCGTACCGATCCGTTGCTATTGCTGCGTGTGATTTCATCATCTATAAGAACATATATAGCTACGTGCGACCGTGTGGTGATTAATTAAGGTCTGAATAAAATAATAGCCGCACAAAACTAGGAAGCGATCGATCACCCCAGATAAATGTATGTGCGTTCCCTTTTCTTTCAAGATGTGTAATTTTTTCAACGTGCGGTTCCAGATATGCATGGACTGGACCGGAGTGCATTGTAATTCTTTTGTTTCCCCTGTTGAATATGCAAGA
  • >Zm00001eb067380_T001
    ACTAGCAAACATTAATAACGCAAGCGGCACTGTTGTCAGTGTCAGTGCACAGTAGATATACTGCTAGCTAGCTTACCTGGCAGCCAGTGCAACTGCACTGCACGTCTCCAATGCGCTGCTATTATAACGACGCGAACGCCGCGCAGGCCTTCCGTGGTATACAGCAGCAGAAGCAGCATCACGATCCCGGCCCGGCGGCGCGTACGTCGACGAGGAGGAGGAGGACGTACGTACGCAGAGCAGCTGCTGGCACCATGGCTCCCGTGAGCATCAGCGCTGTTCCGTTCCTCCCGACGGCGGCGGAGGGGGAGACGAAGCTGCGCGCGTCGTTCGTGCGCGAGGAGGACGAGCGCCCCAAGGTGCCGCACGACCGCTTCAGCGACGAGGTGCCGGTGGTGTCGCTCGAGGGCATCGACGGCGCGCGGCGGGCCGAGATCCGCGCGCGCGTGGCCGCGGCCTGCGAGGACTGGGGCATCTTCCAGGTGGTGGACCACGGCGTGGACGCCGCGCTCGTGGCCGACATGGCGCGCCTCGCGCGCGACTTCTTCGCGCTCCCGCCCGAGGACAAGCTCCGCTTCGACATGTCCGGCGGGAAGAAGGGCGGCTTCATCGTCTCCAGCCACCTCCAGGGGGAGGCGGTGCAGGACTGGCGTGAGATCGTGACCTACTTCTCGTACCCGGTGAAGGCCCGCGACTACTCCCGGTGGCCTGACAAGCCGGCGGCGTGGCGGGCGGTGGTGGAGCGGTACAGCGAGCAGCTGATGGCGCTGGCGTGCAGGCTCCTGGGCGTGCTCTCGGAGGCCATGGGCCTGGACACGGAGGCGCTGGCCAGGGCCTGCGTGGACATGGACCAGAAGGTGGTGGTCAACTTCTACCCGAGGTGCCCGCAGCCGGACCTCACGCTGGGGCTCAAGCGCCACACCGACCCCGGCACCATCACGCTGCTGCTGCAGGACCTCGTCGGCGGCCTCCAGGCCACGCGCGACGGCGGCCGGACCTGGATCACCGTGCAGCCCGTGGAGGGCGCCTTCGTCGTCAACCTCGGCGACCACGGCCACCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCGACGCGACGGTGTACCCGCTGGCCGTGCGCGACGGGGAGGCGCCCATACTGGACCATCCCATCACCTTCGCCGAGATGTACCGCCGCAAGATGGCCCGCGACATCGAGCTCGCCAGGCTCAAGAAGCAGGTCAAGGCCGACAAGAGTGCCAACAAGGAGTTCGCCGACTCCAAGCCTCTCGACGCCATTCTTGCCTGATATGGTAGGGGGGGCGCGACTACCGTACCGATCCGTTGCTATTGCTGCGTGTGATTTCATCATCTATAAGAACATATATAGCTACGTGCGACCGTGTGGTGATTAATTAAGGTCTGAATAAAATAATAGCCGCACAAAACTAGGAAGCGATCGATCACCCCAGATAAATGTATGTGCGTTCCCTTTTCTTTCAAGATGTGTAATTTTTTCAACGTGCGGTTCCAGATATGCATGGACTGGACCGGAGTGCATTGTAATTCTTTTGTTTCCCCTGTTGAATATGCAAGA
CDS Sequence
  • >Zm00001eb067380_T002
    ATGCGCTGCTATTATAACGACGCGAACGCCGCGCAGGCCTTCCGTGGTATACAGCAGCAGAAGCAGCATCACGATCCCGGCCCGGCGGCGCGTACGTCGACGAGGAGGAGGAGGACGTACGTACGCAGAGCAGCTGCTGGCACCATGGCTCCCGTGAGCATCAGCGCTGTTCCGTTCCTCCCGACGGCGGCGGAGGGGGAGACGAAGCTGCGCGCGTCGTTCGTGCGCGAGGAGGACGAGCGCCCCAAGGTGCCGCACGACCGCTTCAGCGACGAGGTGCCGGTGGTGTCGCTCGAGGGCATCGACGGCGCGCGGCGGGCCGAGATCCGCGCGCGCGTGGCCGCGGCCTGCGAGGACTGGGGCATCTTCCAGGTGGTGGACCACGGCGTGGACGCCGCGCTCGTGGCCGACATGGCGCGCCTCGCGCGCGACTTCTTCGCGCTCCCGCCCGAGGACAAGCTCCGCTTCGACATGTCCGGCGGGAAGAAGGGCGGCTTCATCGTCTCCAGCCACCTCCAGGGGGAGGCGGTGCAGGACTGGCGTGAGATCGTGACCTACTTCTCGTACCCGGTGAAGGCCCGCGACTACTCCCGGTGGCCTGACAAGCCGGCGGCGTGGCGGGCGGTGGTGGAGCGGTACAGCGAGCAGCTGATGGCGCTGGCGTGCAGGCTCCTGGGCGTGCTCTCGGAGGCCATGGGCCTGGACACGGAGGCGCTGGCCAGGGCCTGCGTGGACATGGACCAGAAGGTGGTGGTCAACTTCTACCCGAGGTGCCCGCAGCCGGACCTCACGCTGGGGCTCAAGCGCCACACCGACCCCGGCACCATCACGCTGCTGCTGCAGGACCTCGTCGGCGGCCTCCAGGCCACGCGCGACGGCGGCCGGACCTGGATCACCGTGCAGCCCGTGGAGGGCGCCTTCGTCGTCAACCTCGGCGACCACGGCCACCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCGACGCGACGGTGTACCCGCTGGCCGTGCGCGACGGGGAGGCGCCCATACTGGACCATCCCATCACCTTCGCCGAGATGTACCGCCGCAAGATGGCCCGCGACATCGAGCTCGCCAGGCTCAAGAAGCAGGTCAAGGCCGACAAGAGTGCCAACAAGGAGTTCGCCGACTCCAAGCCTCTCGACGCCATTCTTGCCTGA
  • >Zm00001eb067380_T001
    ATGCGCTGCTATTATAACGACGCGAACGCCGCGCAGGCCTTCCGTGGTATACAGCAGCAGAAGCAGCATCACGATCCCGGCCCGGCGGCGCGTACGTCGACGAGGAGGAGGAGGACGTACGTACGCAGAGCAGCTGCTGGCACCATGGCTCCCGTGAGCATCAGCGCTGTTCCGTTCCTCCCGACGGCGGCGGAGGGGGAGACGAAGCTGCGCGCGTCGTTCGTGCGCGAGGAGGACGAGCGCCCCAAGGTGCCGCACGACCGCTTCAGCGACGAGGTGCCGGTGGTGTCGCTCGAGGGCATCGACGGCGCGCGGCGGGCCGAGATCCGCGCGCGCGTGGCCGCGGCCTGCGAGGACTGGGGCATCTTCCAGGTGGTGGACCACGGCGTGGACGCCGCGCTCGTGGCCGACATGGCGCGCCTCGCGCGCGACTTCTTCGCGCTCCCGCCCGAGGACAAGCTCCGCTTCGACATGTCCGGCGGGAAGAAGGGCGGCTTCATCGTCTCCAGCCACCTCCAGGGGGAGGCGGTGCAGGACTGGCGTGAGATCGTGACCTACTTCTCGTACCCGGTGAAGGCCCGCGACTACTCCCGGTGGCCTGACAAGCCGGCGGCGTGGCGGGCGGTGGTGGAGCGGTACAGCGAGCAGCTGATGGCGCTGGCGTGCAGGCTCCTGGGCGTGCTCTCGGAGGCCATGGGCCTGGACACGGAGGCGCTGGCCAGGGCCTGCGTGGACATGGACCAGAAGGTGGTGGTCAACTTCTACCCGAGGTGCCCGCAGCCGGACCTCACGCTGGGGCTCAAGCGCCACACCGACCCCGGCACCATCACGCTGCTGCTGCAGGACCTCGTCGGCGGCCTCCAGGCCACGCGCGACGGCGGCCGGACCTGGATCACCGTGCAGCCCGTGGAGGGCGCCTTCGTCGTCAACCTCGGCGACCACGGCCACCTCCTGAGCAACGGCAGGTTCAAGAACGCGGACCACCAGGCGGTGGTGAACTCGGAGTGCAGCCGCCTGTCCATCGCCACGTTCCAGAACCCGGCGCCCGACGCGACGGTGTACCCGCTGGCCGTGCGCGACGGGGAGGCGCCCATACTGGACCATCCCATCACCTTCGCCGAGATGTACCGCCGCAAGATGGCCCGCGACATCGAGCTCGCCAGGCTCAAGAAGCAGGTCAAGGCCGACAAGAGTGCCAACAAGGAGTTCGCCGACTCCAAGCCTCTCGACGCCATTCTTGCCTGA
Protein Sequence
  • >Zm00001eb067380_P002
    MRCYYNDANAAQAFRGIQQQKQHHDPGPAARTSTRRRRTYVRRAAAGTMAPVSISAVPFLPTAAEGETKLRASFVREEDERPKVPHDRFSDEVPVVSLEGIDGARRAEIRARVAAACEDWGIFQVVDHGVDAALVADMARLARDFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVKARDYSRWPDKPAAWRAVVERYSEQLMALACRLLGVLSEAMGLDTEALARACVDMDQKVVVNFYPRCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGRTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSECSRLSIATFQNPAPDATVYPLAVRDGEAPILDHPITFAEMYRRKMARDIELARLKKQVKADKSANKEFADSKPLDAILA
  • >Zm00001eb067380_P001
    MRCYYNDANAAQAFRGIQQQKQHHDPGPAARTSTRRRRTYVRRAAAGTMAPVSISAVPFLPTAAEGETKLRASFVREEDERPKVPHDRFSDEVPVVSLEGIDGARRAEIRARVAAACEDWGIFQVVDHGVDAALVADMARLARDFFALPPEDKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVKARDYSRWPDKPAAWRAVVERYSEQLMALACRLLGVLSEAMGLDTEALARACVDMDQKVVVNFYPRCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGRTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSECSRLSIATFQNPAPDATVYPLAVRDGEAPILDHPITFAEMYRRKMARDIELARLKKQVKADKSANKEFADSKPLDAILA

Source: Genetic information comes from the article