Gene Details:

Functional Descriptions:

  • Characterized a mutant of DEFECTIVE KERNEL 56 (DEK56) with defective kernels that exhibited arrested development of both the embryo and endosperm.
  • Dysfunction of DEK56 resulted in altered cytidine (C)-to-uridine (U) editing efficiency at 48 editing sites across 21 mitochondrial transcripts.
  • DEFECTIVE KERNEL 56 functions in mitochondrial RNA editing and maize seed development.
  • DEK56 encodes a mitochondria-targeted E subgroup PPR protein.
  • DEK56 exhibited an irregular mitochondrion with a collapsed inner structure.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Zm00001eb188450_T001
    TAGAAACCGAACATTATTCACAGAATAGAAAACAATCCGTCCTTAGCTGCGTGCATCTCCTCGCCGGTGGCCCTCGCGGCAAGGCTGGCGGCGGCTCCGACGGCGTCACGAAGCGGGCAGCAGCTCCGGCACCACGGTGGACTACCGATAACCGGCGTCGGCAACTGGCTGACGTTGGGTGTTTTCCGGCCGTCGCATCCATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAAGTGCACACTTTCATTGCTGGGGAGAGGACTCACCAAGATTGGGATAATATATGTACATTGCTCTGTGATGTGTCACGAAGGTCAAGAAGCGGGGACAGCTCCTTTCATGTAGACACTGGCTTAGCATTCTAGGATTTAGCTGACTGCTCTTCTTTGAATTGAAATTGATACTTGATGTACCTCAATTGTTGCCGAACTTCTAGAAGAAACCTGGTGGGAAAAAGGAGGGCAGACCCGGTGCAGGAGGCTCTCACATGAGTGGGCCCACAGAAGGGATAAACCGAGGCAACCCTTCCCCCATAAATGTGGAGAGGCTGCTTCAAACCCGCGGCTGGTGACTCAATTAAACAGCTCTCACCACTGCACCAAACCTACCCTTTAGAAGAAACCTGGCGAGTTTTGTTCCTAAAGAAGGTTTGGTCATTTCAGAGTTCTACAACCTGCAGATTTTGTAGCCTGTAGGCAGGTAGCTTATTGAAGTACTTGTACAGGTCTTATTATAAGCAATTGGATGGTGTCTGGAATCTTCATTGATGATTCTCTGTATAAATTACTAGTTTTTAAGGAACCAAAAAGCTATAAGCCTCCAGATTTTGCTAAACATTCATGTTAAAGTTACTGGCATCGTCAACATTCTAATAAGTGCAACTATCAATAGCTAACATTGCCTTCCCAATGGAATGCTGATGGATGTCCTTGTATTGTGTGTAGGAAATATGCCCATAGTTACTGCAACTGTCTTTTGTCTCTACTATGTATGATATATC
CDS Sequence
  • >Zm00001eb188450_T001
    ATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAA
Protein Sequence
  • >Zm00001eb188450_P001
    MQPLQKLLEAAAATSTPLAAAHLHANILRSGLLHSSHHLTAHVLACYPPGLARDLFDEIRSPTPRLANALLRAHIRARQWRAAILLGQRLRVRRDGFTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRDLRKVAGYSSVEVTN

Source: Genetic information comes from the article