Information report for DEK56
Gene Details
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Functional Descriptions
- Characterized a mutant of DEFECTIVE KERNEL 56 (DEK56) with defective kernels that exhibited arrested development of both the embryo and endosperm.
- Dysfunction of DEK56 resulted in altered cytidine (C)-to-uridine (U) editing efficiency at 48 editing sites across 21 mitochondrial transcripts.
- DEFECTIVE KERNEL 56 functions in mitochondrial RNA editing and maize seed development.
- DEK56 encodes a mitochondria-targeted E subgroup PPR protein.
- DEK56 exhibited an irregular mitochondrion with a collapsed inner structure.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC103653970
- UniProt accessions: A0A3L6F8E1 , A0A3L6F8H0 , K7U3H6
- EMBL: CM000780
- AlphaFoldDB: K7U3H6
- InterPro: IPR002885 , IPR011990 , IPR046848 , IPR046960
- PANTHER: PTHR24015 , PTHR24015:SF1938
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- SMR: K7U3H6
Homologs
- Brassica oleracea: Bol045745
- Brassica rapa: Brara.I04422
- Gossypium barbadense: Gobar.D03G069200, Gobar.A02G135500
- Gossypium hirsutum: Gohir.A02G124200, Gohir.D03G065000
- Musa acuminata: Ma06_g03330
- Rosa chinensis: RchiOBHm_Chr5g0011421
Sequences
cDNA Sequence
- >Zm00001eb188450_T001
TAGAAACCGAACATTATTCACAGAATAGAAAACAATCCGTCCTTAGCTGCGTGCATCTCCTCGCCGGTGGCCCTCGCGGCAAGGCTGGCGGCGGCTCCGACGGCGTCACGAAGCGGGCAGCAGCTCCGGCACCACGGTGGACTACCGATAACCGGCGTCGGCAACTGGCTGACGTTGGGTGTTTTCCGGCCGTCGCATCCATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAAGTGCACACTTTCATTGCTGGGGAGAGGACTCACCAAGATTGGGATAATATATGTACATTGCTCTGTGATGTGTCACGAAGGTCAAGAAGCGGGGACAGCTCCTTTCATGTAGACACTGGCTTAGCATTCTAGGATTTAGCTGACTGCTCTTCTTTGAATTGAAATTGATACTTGATGTACCTCAATTGTTGCCGAACTTCTAGAAGAAACCTGGTGGGAAAAAGGAGGGCAGACCCGGTGCAGGAGGCTCTCACATGAGTGGGCCCACAGAAGGGATAAACCGAGGCAACCCTTCCCCCATAAATGTGGAGAGGCTGCTTCAAACCCGCGGCTGGTGACTCAATTAAACAGCTCTCACCACTGCACCAAACCTACCCTTTAGAAGAAACCTGGCGAGTTTTGTTCCTAAAGAAGGTTTGGTCATTTCAGAGTTCTACAACCTGCAGATTTTGTAGCCTGTAGGCAGGTAGCTTATTGAAGTACTTGTACAGGTCTTATTATAAGCAATTGGATGGTGTCTGGAATCTTCATTGATGATTCTCTGTATAAATTACTAGTTTTTAAGGAACCAAAAAGCTATAAGCCTCCAGATTTTGCTAAACATTCATGTTAAAGTTACTGGCATCGTCAACATTCTAATAAGTGCAACTATCAATAGCTAACATTGCCTTCCCAATGGAATGCTGATGGATGTCCTTGTATTGTGTGTAGGAAATATGCCCATAGTTACTGCAACTGTCTTTTGTCTCTACTATGTATGATATATC
CDS Sequence
- >Zm00001eb188450_T001
ATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAA
Protein Sequence
- >Zm00001eb188450_P001
MQPLQKLLEAAAATSTPLAAAHLHANILRSGLLHSSHHLTAHVLACYPPGLARDLFDEIRSPTPRLANALLRAHIRARQWRAAILLGQRLRVRRDGFTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRDLRKVAGYSSVEVTN