Gene Details:
- Gene ID: Zm00001eb188450
- Gene Symbol: DEK56
- Gene Name: DEFECTIVE KERNEL 56
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- Characterized a mutant of DEFECTIVE KERNEL 56 (DEK56) with defective kernels that exhibited arrested development of both the embryo and endosperm.
- Dysfunction of DEK56 resulted in altered cytidine (C)-to-uridine (U) editing efficiency at 48 editing sites across 21 mitochondrial transcripts.
- DEFECTIVE KERNEL 56 functions in mitochondrial RNA editing and maize seed development.
- DEK56 encodes a mitochondria-targeted E subgroup PPR protein.
- DEK56 exhibited an irregular mitochondrion with a collapsed inner structure.
Function-related keywords:
- development , seed , mitochondria , embryo , endosperm , seed-development , endosperm-development , embryo-development
Literature:
- DEFECTIVE KERNEL 56 functions in mitochondrial RNA editing and maize seed development. DOI: 10.1093/plphys/kiad598 ; PMID: 37956067
Related News:
Gene Resources:
- NCBI ID: LOC103653970
- UniProt accessions: A0A3L6F8E1 , A0A3L6F8H0 , K7U3H6
Sequences:
cDNA Sequence
- >Zm00001eb188450_T001
TAGAAACCGAACATTATTCACAGAATAGAAAACAATCCGTCCTTAGCTGCGTGCATCTCCTCGCCGGTGGCCCTCGCGGCAAGGCTGGCGGCGGCTCCGACGGCGTCACGAAGCGGGCAGCAGCTCCGGCACCACGGTGGACTACCGATAACCGGCGTCGGCAACTGGCTGACGTTGGGTGTTTTCCGGCCGTCGCATCCATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAAGTGCACACTTTCATTGCTGGGGAGAGGACTCACCAAGATTGGGATAATATATGTACATTGCTCTGTGATGTGTCACGAAGGTCAAGAAGCGGGGACAGCTCCTTTCATGTAGACACTGGCTTAGCATTCTAGGATTTAGCTGACTGCTCTTCTTTGAATTGAAATTGATACTTGATGTACCTCAATTGTTGCCGAACTTCTAGAAGAAACCTGGTGGGAAAAAGGAGGGCAGACCCGGTGCAGGAGGCTCTCACATGAGTGGGCCCACAGAAGGGATAAACCGAGGCAACCCTTCCCCCATAAATGTGGAGAGGCTGCTTCAAACCCGCGGCTGGTGACTCAATTAAACAGCTCTCACCACTGCACCAAACCTACCCTTTAGAAGAAACCTGGCGAGTTTTGTTCCTAAAGAAGGTTTGGTCATTTCAGAGTTCTACAACCTGCAGATTTTGTAGCCTGTAGGCAGGTAGCTTATTGAAGTACTTGTACAGGTCTTATTATAAGCAATTGGATGGTGTCTGGAATCTTCATTGATGATTCTCTGTATAAATTACTAGTTTTTAAGGAACCAAAAAGCTATAAGCCTCCAGATTTTGCTAAACATTCATGTTAAAGTTACTGGCATCGTCAACATTCTAATAAGTGCAACTATCAATAGCTAACATTGCCTTCCCAATGGAATGCTGATGGATGTCCTTGTATTGTGTGTAGGAAATATGCCCATAGTTACTGCAACTGTCTTTTGTCTCTACTATGTATGATATATC
CDS Sequence
- >Zm00001eb188450_T001
ATGCAACCGCTCCAAAAGCTTCTAGAAGCCGCTGCCGCCACCTCTACCCCTCTCGCCGCCGCGCATCTCCACGCTAACATTCTCCGCTCGGGCCTCCTCCACTCTTCGCACCACCTGACCGCGCACGTCCTCGCGTGCTACCCTCCGGGCCTCGCCCGCGACCTGTTCGACGAAATCCGCAGCCCGACGCCGCGCCTCGCCAACGCGCTCCTCCGCGCCCACATCCGCGCGCGGCAGTGGCGCGCCGCTATCCTCCTTGGTCAGCGGCTCCGAGTGCGCCGGGACGGCTTCACTCTCTCGCTCCTGCTGAGGGCCTGCACCGCGCTCCCCTCGCTCACCCATGGCCGCGCCGTGCACGCGGCCGCCGTACGCTCTTGCACCGCGTCTGAAGACGCCTTTGTCGCCACAGCGATCGTGCAGATGTACTCCAGGTGTGGAGACATGGCTGGGGCCATCAACGCGTATGGCATGCTTGAGAAGCCGGACATTGTGCTCAGGACGTCTGTGGTAACCGGCTACGAGCAGAACGGAATGGCCGAGGAAGCACTGGAGTTCTTTGCAAGGAACGTTGTTGGTCAGGGCGTTTTGGTGACACCAGTCACACTTGTGAGTGTGATGTCGGCAGCAGCACAGTTGGGGCATGTCCGGAAGGGACAGGCGTGCCACGCTTATGTTGTCAGAAACAGCTTGAGCTATGATCTAGCTTTAGTAAATGCTGTTCTCGGCTTTTATGTGAAAATTGGTGATTTACAGGCATCTATGAGGTTATTTGAGGGCATGACAGATAGGGATGTGATCACTTGGAGCTGCATGATCAAAGGGTATGTGCAACACGGAGACGCACACACAGGGTTCAGAATGTACAGGGAGATGGTTAAGGCACGTGTCCAGCCCAATTCAGTGACTTTAGTGAGTGTTCTGCAGGCTTGTGCGCTAGTTGTCGATGCTGAGGAAGGTAAGCGACTTCACCGTGTTGCTGTCAGCATAGGTTGTGAGCTTGAGCTGGGTGTAGCGACGGCTTTGGTTGATATGTACATGAAGTGCTCATGTCATGAGGAGGCAATGCGCTTATTTCATCGGATGCCAAAGAAAGATGTGGTTGCTTGGGCTGCTGTCATTGGTGGCCTCACACAAAATGAACTCCCTGGTGAATCCCTCCATTCGTTCAAATGCATGTTGTTGAATGATCATGTTCCTGATGCCGTCACGATGGTGAAGGTACTTGCTGCATGCTCAGAATTTGGAGGTAATCGCCTAGCCATTTGTCTCCATGGCTATTTAGTTAGAAATGGTTTCAATAATAATGCATTTGTAGCTGCTGCCCTTCTTGATTTGTATTCAAAATGTGGAGACTTAGATAGCGCTGTTAGGGTATTTGAAGGTACTACAGAAAAAGATATTGTGGTGTGGGGCTCAATGATTGCTGGTTATGGAGCCCACGGCCTTGGTCAAGAAGCTGTTGCGTTGTACCAAAGGATGATTGCCTCATCAATTCAACCCAACAATGTGACGTTTCTGTCAGTGTTATCAGCATGCAGCCACTCTGGCCTGGTTCAGGAAGGAATACAAATTTTTGATAGCATGACTCAAGTTTTTGGAGTCGTGCCAAATGCCGAGCATCAAAGTGCTATGGTTGATCTCCTTGGCCGGGCTGGTGAACTGCAAGAGGCTATAAGAGTCATTCGTGATATGGATGGAAGAGCTGTTGCCCATACTTGGTGTGCCTTACTTGCTGCATGCAGAAAACACAACAACACTAAGATGAGCGAAGTAGCAGCAAAGAATCTGCTCAAGCTGGATCCTGACCATGTTGGCTACTACAATCTCTTGACAAATTTATATGCATTTGATGAGAAGTGGGAGAATGTAAAGGACACAAGGGACATGGTGAAGGGTAGAGATCTGCGTAAAGTGGCAGGTTACAGTTCAGTTGAGGTCACTAACTAA
Protein Sequence
- >Zm00001eb188450_P001
MQPLQKLLEAAAATSTPLAAAHLHANILRSGLLHSSHHLTAHVLACYPPGLARDLFDEIRSPTPRLANALLRAHIRARQWRAAILLGQRLRVRRDGFTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAACRKHNNTKMSEVAAKNLLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRDLRKVAGYSSVEVTN
Source: Genetic information comes from the article