Gene Details:
- Gene ID: Zm00001eb072800
- Gene Symbol: DEK48
- Gene Name: DEFECTIVE KERNEL 48
- Genome:
- Species: Zea mays
Functional Descriptions:
- DEK48 Is Required for RNA Editing at Multiple Mitochondrial Sites and Seed Development in Maize.
- A mitochondrion-localized DYW-type PPR protein, DEK48, functioning in the C-to-U RNA editing at multiple mitochondrial transcripts in maize.
- DEK48 loss of function abolishes the C-to-U editing at nad3-185, -215, and nad4-376, -977 sites and decreases the editing at 11 other sites, resulting in the alteration of the corresponding amino acids.
- We identified a point mutation in DEK48-3 causing a deletion of the Tryptophan (W) residue in the DYW motif that abolishes the editing function.
Function-related keywords:
Literature:
- DEK48 Is Required for RNA Editing at Multiple Mitochondrial Sites and Seed Development in Maize. DOI: 10.3390/ijms23063064 ; PMID: 35328485
Related News:
Gene Resources:
- NCBI ID: LOC100304218
- UniProt accessions: C0HDT4
Sequences:
cDNA Sequence
- >Zm00001eb072800_T001
CCAAGACTTCACAACCTGGCAACCCGCCAACCCGCAAGGCCGCAACAAGATTTCATTCAATGGGCCGAATTGGACCATTGCGATTTTGCTTCTTCTGGGAGGACTCATATAGCATAGCGCAAGGCTGCAACCGTTTGAATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGAGTGGTGACCACTGACCATGGTCCATGGATTCTTGCATAGTTCTTTTCGTTGACATTGGTTGAGGAGAGTATCATAGAATATCTTGATGTTATCTTTTTTCGTCATTCCTTATCCATAATCTATAGATTCGCTCCAGCCTAAATAAAGACGGCCAGATCGCTAGATCATGCTTACATCATGGCAAGTACTCCCTCCGATTTTTTTTAATTTGATGTTTGTTAGTGTAAATTTGTACTATCTCACGTCAAATAAAAAAATGGAGGTAGTATCAGGAAACA
CDS Sequence
- >Zm00001eb072800_T001
ATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGA
Protein Sequence
- >Zm00001eb072800_P001
MVASPWPSPPSPPPPAVASHMAVTQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW
Source: Genetic information comes from the article