Information report for DEK48
Gene Details
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Functional Descriptions
- DEK48 Is Required for RNA Editing at Multiple Mitochondrial Sites and Seed Development in Maize.
- A mitochondrion-localized DYW-type PPR protein, DEK48, functioning in the C-to-U RNA editing at multiple mitochondrial transcripts in maize.
- DEK48 loss of function abolishes the C-to-U editing at nad3-185, -215, and nad4-376, -977 sites and decreases the editing at 11 other sites, resulting in the alteration of the corresponding amino acids.
- We identified a point mutation in DEK48-3 causing a deletion of the Tryptophan (W) residue in the DYW motif that abolishes the editing function.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: LOC100304218
- UniProt accessions: C0HDT4
- EMBL: BT060490 , CM007648
- EnsemblPlants: Zm00001eb072800_T001
- Gramene: Zm00001eb072800_T001
- KEGG: zma:100304218
- OMA: ETFVSMH
- ExpressionAtlas: Zm00001eb072800
- InterPro: IPR002885 , IPR011990 , IPR032867 , IPR046848 , IPR046960
- PANTHER: PTHR47926 , PTHR47926:SF370
- PROSITE: PS51375
- Gene3D: 1.25.40.10
- OrthoDB: C0HDT4
- SMR: C0HDT4
Homologs
- Arabidopsis thaliana: AT3G49170, AT3G11460
- Citrullus lanatus: Cla97C09G165370
- Gossypium barbadense: Gobar.D03G069200, Gobar.A02G135500
- Gossypium hirsutum: Gh_A13G0768, Gohir.A02G124200, Gohir.D03G065000
- Juglans regia: Jr12_20270
- Malus domestica: MD17G1217600
- Musa acuminata: Ma06_g03330
- Rosa chinensis: RchiOBHm_Chr5g0011421
Sequences
cDNA Sequence
- >Zm00001eb072800_T001
CCAAGACTTCACAACCTGGCAACCCGCCAACCCGCAAGGCCGCAACAAGATTTCATTCAATGGGCCGAATTGGACCATTGCGATTTTGCTTCTTCTGGGAGGACTCATATAGCATAGCGCAAGGCTGCAACCGTTTGAATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGAGTGGTGACCACTGACCATGGTCCATGGATTCTTGCATAGTTCTTTTCGTTGACATTGGTTGAGGAGAGTATCATAGAATATCTTGATGTTATCTTTTTTCGTCATTCCTTATCCATAATCTATAGATTCGCTCCAGCCTAAATAAAGACGGCCAGATCGCTAGATCATGCTTACATCATGGCAAGTACTCCCTCCGATTTTTTTTAATTTGATGTTTGTTAGTGTAAATTTGTACTATCTCACGTCAAATAAAAAAATGGAGGTAGTATCAGGAAACA
CDS Sequence
- >Zm00001eb072800_T001
ATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGA
Protein Sequence
- >Zm00001eb072800_P001
MVASPWPSPPSPPPPAVASHMAVTQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW