Gene Details:

  • Gene ID: Zm00001eb072800
  • Gene Symbol: DEK48
  • Gene Name: DEFECTIVE KERNEL 48
  • Genome:
  • Species: Zea mays

Functional Descriptions:

  • DEK48 Is Required for RNA Editing at Multiple Mitochondrial Sites and Seed Development in Maize.
  • A mitochondrion-localized DYW-type PPR protein, DEK48, functioning in the C-to-U RNA editing at multiple mitochondrial transcripts in maize.
  • DEK48 loss of function abolishes the C-to-U editing at nad3-185, -215, and nad4-376, -977 sites and decreases the editing at 11 other sites, resulting in the alteration of the corresponding amino acids.
  • We identified a point mutation in DEK48-3 causing a deletion of the Tryptophan (W) residue in the DYW motif that abolishes the editing function.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >Zm00001eb072800_T001
    CCAAGACTTCACAACCTGGCAACCCGCCAACCCGCAAGGCCGCAACAAGATTTCATTCAATGGGCCGAATTGGACCATTGCGATTTTGCTTCTTCTGGGAGGACTCATATAGCATAGCGCAAGGCTGCAACCGTTTGAATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGAGTGGTGACCACTGACCATGGTCCATGGATTCTTGCATAGTTCTTTTCGTTGACATTGGTTGAGGAGAGTATCATAGAATATCTTGATGTTATCTTTTTTCGTCATTCCTTATCCATAATCTATAGATTCGCTCCAGCCTAAATAAAGACGGCCAGATCGCTAGATCATGCTTACATCATGGCAAGTACTCCCTCCGATTTTTTTTAATTTGATGTTTGTTAGTGTAAATTTGTACTATCTCACGTCAAATAAAAAAATGGAGGTAGTATCAGGAAACA
CDS Sequence
  • >Zm00001eb072800_T001
    ATGGTGGCGTCCCCATGGCCGTCACCGCCGTCTCCTCCTCCTCCGGCGGTTGCCTCCCACATGGCGGTGACGCAGGCGTTTGCCGACGCGCTGCGTTCGTGCGGTGCGCGCGGCGCGCTCGCCGGCGCCCGCGCGTTGCACGGTCGCCTCGTCGCCGTGGGCCTCGCGTCCGCCGTCTTCCTACAGAACACGCTCCTCCATGCCTACCTCTCCTGCGGAGCCCTCTCCGACGCCCGACGCTTGCTTCTGATGGACATCGCCCATCCTAATGTCATCACCCACAACGTCATGCTGAATGGGTACGCCAAGCTCGGCCGACTGAGCGATGCCGTGGAGCTGTTCGGTAGAATGCCCGCGCGAGACGTGGCTTCGTGGAACACGCTCATGTCCGGATACTTTCAGAGCCGACAGTACTTGGTTTCTTTGGAAACCTTTCTGTCCATGCACCGAAGTGGTGATTCGTGGCCAAATGCATTCACATTAGCTTGTGCCATGAAGTCTTGTGGCGCCCTTGGATGGCACAGTTTGGCGCTGCAGCTGCTTGCGATGGTTCAGAAGTTCGATTCTCAGGATGATAGTGAGGTAGCAGCTGCCCTTGTCGACATGTTTGTGAGATGTGGAGCTGTGGATTTAGCTTCAAGGTTGTTTGTTCGCATTAAAGAACCCACTATGTTCTGTCGGAACAGTATGCTAGCGGGATATGTCAAGACATATGGTGTCGATCATGCTCTTGAGCTTTTTGATAGCATGCCTGAACGTGATGTTGTTTCGTGGAACATGATGGTATCAGCATTGTCTCAGAGTGGCCGAGTCAGAGAAGCCCTTGATATGGTTGTAGACATGCAAAGCAAAGGGGTGCGTCTTGATTCAACAACATACACTAGTTCGCTTACTGCATGTGCTAGATTATCTTCTTTAAGATGGGGTAAGCAACTTCATGCTCAGGTGATTCGGAACCTACCGCACATTGATCCATATGTTGCAAGTGCTCTTGTTGAACTGTATGCAAAATCTGGCTGTTTCAAGGAAGCTAAGGGGGTCTTCAACTCTTTACATGACCGTAACAATGTGGCTTGGACAGTTCTCATCTCAGGATTCTTGCAGTATGGGTGTTTCACTGAATCTGTTGAATTGTTCAACCAGATGAGAGCTGAGTTGATGACACTTGATCAGTTCGCTTTGGCTACTCTTATAAGTGGCTGCTGCAGCAGGATGGATTTGTGCCTTGGGAGGCAACTACATTCACTTTGTCTGAAAAGTGGGCAGATTCAAGCTGTAGTCGTCTCCAATTCTCTCATCTCCATGTATGCAAAGTGCGACAATCTCCAGAGTGCTGAAGCTATATTCAGATTTATGAATGAAAAGGACATTGTATCATGGACAAGCATGATAACTGCATATTCTCAAGTAGGAAACGTTGCAAAAGCTCGTGAGTTCTTTGATGGCATGTCAGAAAAGAATGTCATTACATGGAATGCTATGTTGGGAGCATATATACAGCATGGAGCTGAGGAAGATGGCCTCAGGATGTATAAGGTCATGCTAAGTGAGGAGTATGTTAGACCTGACTGGGTTACCTATGTCACATTGTTCAAAGGCTGTGCAGACTTAGGTGCAAACAAACTTGGAGATCAGATTATTGGTCGCACTGTAAAGGTTGGTCTCATTATAGACACCTCTGTTGCGAATGCAGTCATAACAATGTATTCCAAGTGCGGAAGGATTTTAGAAGCTCGAAAGGTATTTGACTTCCTGAACGTGAAGGATATTGTATCTTGGAATGCCATGATCACTGGTTATTCACAGCACGGAATGGGAAAACAAGCCATAGAGATCTTTGATGACATACTTAAAAGAGGTGCAAAGCCAGACTACATAAGCTATGTTGCAGTTCTGTCAGGCTGCAGCCACTCTGGACTCGTGCAGGAGGGGAAATTTTATTTTGATATGATGAAGAGGGCCCATAACATATCTCCAGGTTTGGAGCATTTCTCATGCATGGTAGACCTTCTTGGCCGTGCCGGGCATCTGACGGAAGCCAAGGATCTCATTGACGATATGCCCATGAAACCAACCGCTGAGGTTTGGGGAGCTCTTCTTAGCGCCTGCAAGATACATGGCAACAATGAGCTCGCGGAACTTGCAGCGAAACATGTGTTTGAGCTGGACTCACCTGATTCTGGGAGCTACATGCTTATGGCGAAGATTTATGCCGATGCCGGGAAATCAGATGACTCTGCGCAGATAAGGAAGCTGATGAGGGACAAGGGAATAAAAAAGAACCCGGGCTATAGCTGGATGGAGGTTGACAACAAGGTCCACGTCTTCAAAGCGGATGACGTGAGCCATCCCCAAGTTCTCGCGATTCGGAAGAAGCTAGATGAGCTCATGGAGAAGATCGCGCGCCTAGGGTACGTGAGGACAGACTCCACGCGCTCCGAGATTCACCACAGCGAGAAGCTAGCTGTAGCATTCGGGCTCATGACCTTGCCCACCTGGATGCCGATCCACATCATGAAGAATCTGCGCATTTGCGGCGACTGTCACACTGTGATCAAGCTGATATCCACAGTGACTGGCCGAGAATTCGTGATTCGAGATGCCGTGCGATTCCACCACTTCAATGGTGGTTCCTGCTCTTGCGGGGATTACTGGTGA
Protein Sequence
  • >Zm00001eb072800_P001
    MVASPWPSPPSPPPPAVASHMAVTQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW

Source: Genetic information comes from the article