Gene Details:
- Gene ID: Zm00001eb317730
- Gene Symbol: Dek43
- Gene Name: DEFECTIVE KERNEL 43
- Genome: Zm-B73-REFERENCE-NAM-5.0
- Species: Zea mays
Functional Descriptions:
- Determined that DEK41 is only localized to the mitochondria and identified a splicing defect of nad4 intron 3 in the dek41 mutant.
- Dek43 is a P-type pentatricopeptide repeat (PPR) protein responsible for the Cis-splicing of nad4 in maize mitochondria.
- Dek43, a dual-localized PPR protein, plays an important role in maintaining mitochondrial function and maize kernel development.
- Mutations in Dek43 affect cis-splicing of mitochondrial nad4 introns 1 and 3.
- The Dek43-1 mutant exhibits reduced mitochondrial complex I abundance and activity.
- Dek43 mutations cause reduced splicing efficiency of mitochondrial nad4 intron 3, resulting in severely reduced complex I assembly and NADH dehydrogenase activity.
Function-related keywords:
Literature:
- DEK43 is a P-type pentatricopeptide repeat (PPR) protein responsible for the Cis-splicing of nad4 in maize mitochondria. DOI: 10.1111/jipb.12843 ; PMID: 31119902
- Maize pentatricopeptide repeat protein DEK41 affects cis-splicing of mitochondrial nad4 intron 3 and is required for normal seed development. DOI: 10.1093/jxb/erz193 ; PMID: 31020318
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >Zm00001eb317730_T001
GTGCTCTGTCCATATGCAATCCCATCGTGGCACTGGAACCTTCTCCCATTTCGTCGACTGTGAATACAGAACTTGGACAGCATCACGTCGCTGGATCAGAGTGCCATTTCTGTTCTCAGAAGGTTTCTTTGTGCCTCAGACGACCCATCATCCTCCGCATAACTCCATCGACGTCGATGGCCTGCATGTACATCAACGGTCACTGCCTTGTCCAGTAAGTAACACGTACGAGACGCCGCCATGGCGGGCAACAAGTTCTCGTCGTACCACCTCGCCGCGGCCCTCCGCCGCGAGCCGGACCCCGCCGCCGCGCTCCGCCTCTTCCTCAACCCTCCCGCATCCGCCACCCCGTTCCGCTATTCCCTCCGCTGCTACGACCTCATCATCTCCAGGCTCGCCGCCGCGCGCCTCTTCCCGGCCATGGAGTCCATCCTCTCGCGCCTGGCCTCCTCCTCGGGTCCCCGGCCCCGCGAGCAGCTCCTCTGCCGCGTCGTCTCCGCCTACGGCCGCGCCCGCCTCCCCGCCGCCGCGCGCCGCGCCTTCGCGCACCCGGCCTTCCCTGGGCCCCGCACCGCCAGGGCTCTCAACGCCCTCCTCCACGCCCTGCTCGCCTGCCGCGCTCCCCTCCGCGACCTCCTCGCCGTCTGCCGTGACGCTGGGACCCCGCCGGACGCGTGCACCTATAACATTCTCATGCGGGCAGCGGCTGCGTCCGGCTCCCTTGCCCACGCGCGCCACATGTTCGACGAAATGCTGCGACGGGGCATCGCGCCGACTGTAGTCACTTTCGGCACCCTCGTCGCCGCGCTGTGCGCTGCTGGCCAGCTGGAAGGCGCGTTCGAGGTGAAGGAAGTGATGGTCCGGCAGTACCACGTGTTGCCGAACGTGTATGTGTATACAAGTCTGATCAAGGGGCTCTGTGAGAAAGGGGATGTGGATGCTGCGGTGGCGCTCAAGGAAGAGATGGCAGGGAAGGCAGATCTTGTGCTGGATTCTGCTGTGTATGCGACGCTTGTACGGGCGTTGTTCCAGGTAGGGCGAAAAGGTGCGGTAGTTGGATTGCTGGAGGAGATGAAGGGGAGTGGGGTTGTGGCTGATACGGTGGTGTACAATGCCATGCTCGCAGGCTTTTGTGAGGATGAGAAGGATCTTGCTGCTGCGTTCGCTGTGCTTGACGATATGCAGAAGAATGGGTGCAAGGCGGATGCGGTGAGCTATAATACATTAGTTGCAGGGTTGTGCAAGCTGGGCCGGTGGCGGGATGCACATGAATTGGTTGAGGATATGCCAAGGCAGGGGTGCCATCCAGATGTGGTGACCTACAGAATGCTCTTTGATGGGATGTGTGCTGCTGAGGAGTTTCTTGAAGCAAACCAGGTTTTGGATGAGATGGTTTTCAAGGGTTTTGCGCCAAGCAACGATGGTGCACAGAAGTTTGTCCAGGGGATTGAGAAGGAAGGAGATGTGGTATTGCTAGAGTCAGTGTTGTGCCGACTAGCGAAGGTGAATGCTTTGGTGCCAAGTGGATGGGAAAAAGCTGTAAGTGGTGCGCTGAATGATCCCACAGAGTTGAGGCTAGAGAAGCAGCTTGACTCTTTAAGAATTGCTTGATTAGACACCATAGTGGATTTGATCAATACAGTTTGAGTAGCAAAAAAATGGCAAGCATGATTTTTAAAGAAATCAATTTGTTCATCTGTTATACAAGGCTGCCTTGCAGGAGTCTTACCCAATTCAGGTTAGTTTCTTGCAGGTAGTATTATTAAAGTCAGAGAAAGATTAAAATGGAATCTAAGGTGTGCAACTTATTCAAGTGAAGTTAATTTGCCATAAGATTGGAATATAAGATGGATCTATGGCAAAAAAGAATATTCGTGTTTGCAAGTACATGATCGTATATATTCTAGTTTTTTTGGTATGCTTCTAAATATGTTGTTATTTTGTTCCCTTGCTGACAATAATGTGATCTTTTGAATACTAATATACTGCCTCCTGTCACTTT
CDS Sequence
- >Zm00001eb317730_T001
ATGGCGGGCAACAAGTTCTCGTCGTACCACCTCGCCGCGGCCCTCCGCCGCGAGCCGGACCCCGCCGCCGCGCTCCGCCTCTTCCTCAACCCTCCCGCATCCGCCACCCCGTTCCGCTATTCCCTCCGCTGCTACGACCTCATCATCTCCAGGCTCGCCGCCGCGCGCCTCTTCCCGGCCATGGAGTCCATCCTCTCGCGCCTGGCCTCCTCCTCGGGTCCCCGGCCCCGCGAGCAGCTCCTCTGCCGCGTCGTCTCCGCCTACGGCCGCGCCCGCCTCCCCGCCGCCGCGCGCCGCGCCTTCGCGCACCCGGCCTTCCCTGGGCCCCGCACCGCCAGGGCTCTCAACGCCCTCCTCCACGCCCTGCTCGCCTGCCGCGCTCCCCTCCGCGACCTCCTCGCCGTCTGCCGTGACGCTGGGACCCCGCCGGACGCGTGCACCTATAACATTCTCATGCGGGCAGCGGCTGCGTCCGGCTCCCTTGCCCACGCGCGCCACATGTTCGACGAAATGCTGCGACGGGGCATCGCGCCGACTGTAGTCACTTTCGGCACCCTCGTCGCCGCGCTGTGCGCTGCTGGCCAGCTGGAAGGCGCGTTCGAGGTGAAGGAAGTGATGGTCCGGCAGTACCACGTGTTGCCGAACGTGTATGTGTATACAAGTCTGATCAAGGGGCTCTGTGAGAAAGGGGATGTGGATGCTGCGGTGGCGCTCAAGGAAGAGATGGCAGGGAAGGCAGATCTTGTGCTGGATTCTGCTGTGTATGCGACGCTTGTACGGGCGTTGTTCCAGGTAGGGCGAAAAGGTGCGGTAGTTGGATTGCTGGAGGAGATGAAGGGGAGTGGGGTTGTGGCTGATACGGTGGTGTACAATGCCATGCTCGCAGGCTTTTGTGAGGATGAGAAGGATCTTGCTGCTGCGTTCGCTGTGCTTGACGATATGCAGAAGAATGGGTGCAAGGCGGATGCGGTGAGCTATAATACATTAGTTGCAGGGTTGTGCAAGCTGGGCCGGTGGCGGGATGCACATGAATTGGTTGAGGATATGCCAAGGCAGGGGTGCCATCCAGATGTGGTGACCTACAGAATGCTCTTTGATGGGATGTGTGCTGCTGAGGAGTTTCTTGAAGCAAACCAGGTTTTGGATGAGATGGTTTTCAAGGGTTTTGCGCCAAGCAACGATGGTGCACAGAAGTTTGTCCAGGGGATTGAGAAGGAAGGAGATGTGGTATTGCTAGAGTCAGTGTTGTGCCGACTAGCGAAGGTGAATGCTTTGGTGCCAAGTGGATGGGAAAAAGCTGTAAGTGGTGCGCTGAATGATCCCACAGAGTTGAGGCTAGAGAAGCAGCTTGACTCTTTAAGAATTGCTTGA
Protein Sequence
- >Zm00001eb317730_P001
MAGNKFSSYHLAAALRREPDPAAALRLFLNPPASATPFRYSLRCYDLIISRLAAARLFPAMESILSRLASSSGPRPREQLLCRVVSAYGRARLPAAARRAFAHPAFPGPRTARALNALLHALLACRAPLRDLLAVCRDAGTPPDACTYNILMRAAAASGSLAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGMCAAEEFLEANQVLDEMVFKGFAPSNDGAQKFVQGIEKEGDVVLLESVLCRLAKVNALVPSGWEKAVSGALNDPTELRLEKQLDSLRIA
Source: Genetic information comes from the article