Gene Details:

Functional Descriptions:

  • Genetic variation of VIT_17s0000g08960 coding for a raffinose synthase was further investigated by resequencing the gene of 85 individuals since a SNP located in the region (chr17_10,497,222_C_T) was significantly associated with stomatal conductance.
  • These genotypes were selected both to represent putatively different classes of response to water stress and based on the SNP chr17_10,497,222_C_T at the candidate gene VIT_17s0000g08960
  • The analysis of the VIT_17s0000g08960 transcripts during water deficit revealed that this gene was modulated only in SO4 vines. A significantly higher expression was detected after four days, when plants start to perceive the symptoms of stress, indicating that it might be implicated in early response to drought stress.

Literature:

Gene Resources:

Orthologs:

Sequences:

cDNA Sequence
  • >Vitvi17g00885_t001
    CATAACGGTTGTTAGTGCTTTAATTTTTTGTCTGCCTTTTCATTTCCATGGCTCCCAGCTTGAGCAAAGGTGCTCCGGATGTAATGGGGTTGGAGGACGGTCAGTCATCGTCATCGATCACCCTTCAGGGTTCTGATTTTTTGGCTAATGGCCACCCAGTTCTCACGGAAGTCCCTTCTAACATTGTGGCCATTCCATCACCCTCTAGTCCTGGAAACAAGGCCAAAACCATGGTGGGGTGCTTCGTGGGGTTCGAGGCCGGCGAGGCCAAGAGCCGGCACGTCGTCCCCGTCGGGAAGCTCCAGGAAATACCGTTCATGAGCATATTCAGATTCAAGGTGTGGTGGACCACCCACTGGGTAGGAACCCGCGGAGGAGATGTGGAGCACGAGACCCAGATGATGATTCTGGACAAATCGGACATGGGTCGACCCTATGTTCTCCTCCTCCCACTCATAGAAGGTCCCTTCAGAGCCTCTCTCCAGCCGGGAGAAGACGACAACGTCGACATCTGCGTGGAAAGCGGCTCCACCTCCGTGCGCACCTCCGCCTTCCGGAGCTGCCTCTACATGCACGTAGGAGACAACCCTTATGAACTAGTGAAGGACGCAATGAAAGTGGTGAGGGTCCATCTGGGGACCTTCAAGCTTTTGGAAGAGAAGAGCCCTCCAGGTATAGTAGACAAATTTGGCTGGTGTACATGGGATGCATTTTACCTTAAAGTACACCCCGAAGGTGTTTGGGAAGGAGTGAAGGGCCTAGTGGAGGGTGGGTGCCCTCCTGGCATGGTCCTAATAGACGACGGATGGCAGTCCATCGGTCACGACGATGAACCCATCTCCGACCAAGAAGGCATTAACAGAACCGCCGCGGGTGAGCAAATGCCATGTAGGCTCATAAAATTTGAGGAAAACTACAAGTTTAGGGAGTATGAGAGTCCTAGGGTACCCCAGGAGAAGGGTATGGGGGCATTTGTTAGGGACCTCAAGGATGAGTTTAAGAGCGTAGAACATGTGTATGTGTGGCATGCCCTTTGTGGATATTGGGGTGGGATCAGACCCAATGTCCCAGGCATGCCTGAGTCTAGGGTCATCGCTCCTAAGCTGTCACAGGGTTTGCAGATGACTATGGAGGATTTGGCCGTGGACAAGATCGTCAACAATGGTGTGGGGCTGGTGCCGCCGGAGTCGGTGGCGGAAATGTACGACGGCCTCCACTCTCGGCTGCAATCGGTTGGCGTTGATGGAGTCAAGGTTGATGTGATCCACTTGCTAGAGATGGTAGCAGAGGAATATGGTGGGCGAGTGGAGCTGGCAAAAGCCTATTACAAGGCACTGACTGCATCGGTAAGGAAACATTTCAAAGGGAATGGTGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTGGGGACTGAGACCATTTCGCTCGGCCGCGTTGGGGATGATTTTTGGTGCACCGACCCTTCCGGAGATCCGAACGGCACATTTTGGCTACAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCCTGTGGATGGGCAACTTCATACACCCTGACTGGGACATGTTTCAATCCACCCACCCATGTGCTGAGTTCCACGCCGCTTCACGGGCTGTCTCCGGGGGACCAATATATGTCAGCGACCACGTCGGGAAACACAACTTCCAGCTCCTGAAAACCCTCGTCTTGCCCGATGGGTCGCTTCTGAGGTGCCAACACTACGCCCTTCCCTCAAGAGATTGCCTGTTCCAGGACCCATTACATGATGGGAAAACCATGCTCAAGATTTGGAACCTTAACAAATACACAGGAGTTTTAGGAGCATTCAACTGCCAAGGAGGAGGGTGGTGCAGAGAAACACGAAGAAACAAGAGCGCCTCCGAGTACTCCCGCACCGTTTCATGCTTGGCAAACCCGAGTAAAGACATAGAGTGGAGCGCCGGGAAGAGTCCCATCTCCACCAAAGATGTGGACCTTTTTGCAGTGTACATGTTTCAGGAGAAGACGATGAAGCTGTTGAAGCCATCAGAGAGCCTGGAGATCTCACTGGATCCATTCAAATTTGAACTCCTCACAGTCTCTCCTGTGAAGGTGTTGCCCAGAAATAATAACAATTCAATTCAGTTTGCTCCATTCGGACTGGTGAACATGCTCAACGGTGGCGGGGCGGTTGAGTGGGTGGAGTTGGATGAAGATGAAGATAGGGTGAAAATTGGAGTGAAGGGATGTGGAGAAATGAAGGCATTTGCATCTGAAAAACCAACTACATGTAAGATCAATGGAGAGGGTGTGAAGTTCAGTTACGAGGCCCATACGGTTGGGGTTCAAGTTCCTTGGCCTAGTTCATCACAAGTGTCAATTGTAGAGTACTTGTTCTGA
CDS Sequence
  • >Vitvi17g00885_t001
    ATGGCTCCCAGCTTGAGCAAAGGTGCTCCGGATGTAATGGGGTTGGAGGACGGTCAGTCATCGTCATCGATCACCCTTCAGGGTTCTGATTTTTTGGCTAATGGCCACCCAGTTCTCACGGAAGTCCCTTCTAACATTGTGGCCATTCCATCACCCTCTAGTCCTGGAAACAAGGCCAAAACCATGGTGGGGTGCTTCGTGGGGTTCGAGGCCGGCGAGGCCAAGAGCCGGCACGTCGTCCCCGTCGGGAAGCTCCAGGAAATACCGTTCATGAGCATATTCAGATTCAAGGTGTGGTGGACCACCCACTGGGTAGGAACCCGCGGAGGAGATGTGGAGCACGAGACCCAGATGATGATTCTGGACAAATCGGACATGGGTCGACCCTATGTTCTCCTCCTCCCACTCATAGAAGGTCCCTTCAGAGCCTCTCTCCAGCCGGGAGAAGACGACAACGTCGACATCTGCGTGGAAAGCGGCTCCACCTCCGTGCGCACCTCCGCCTTCCGGAGCTGCCTCTACATGCACGTAGGAGACAACCCTTATGAACTAGTGAAGGACGCAATGAAAGTGGTGAGGGTCCATCTGGGGACCTTCAAGCTTTTGGAAGAGAAGAGCCCTCCAGGTATAGTAGACAAATTTGGCTGGTGTACATGGGATGCATTTTACCTTAAAGTACACCCCGAAGGTGTTTGGGAAGGAGTGAAGGGCCTAGTGGAGGGTGGGTGCCCTCCTGGCATGGTCCTAATAGACGACGGATGGCAGTCCATCGGTCACGACGATGAACCCATCTCCGACCAAGAAGGCATTAACAGAACCGCCGCGGGTGAGCAAATGCCATGTAGGCTCATAAAATTTGAGGAAAACTACAAGTTTAGGGAGTATGAGAGTCCTAGGGTACCCCAGGAGAAGGGTATGGGGGCATTTGTTAGGGACCTCAAGGATGAGTTTAAGAGCGTAGAACATGTGTATGTGTGGCATGCCCTTTGTGGATATTGGGGTGGGATCAGACCCAATGTCCCAGGCATGCCTGAGTCTAGGGTCATCGCTCCTAAGCTGTCACAGGGTTTGCAGATGACTATGGAGGATTTGGCCGTGGACAAGATCGTCAACAATGGTGTGGGGCTGGTGCCGCCGGAGTCGGTGGCGGAAATGTACGACGGCCTCCACTCTCGGCTGCAATCGGTTGGCGTTGATGGAGTCAAGGTTGATGTGATCCACTTGCTAGAGATGGTAGCAGAGGAATATGGTGGGCGAGTGGAGCTGGCAAAAGCCTATTACAAGGCACTGACTGCATCGGTAAGGAAACATTTCAAAGGGAATGGTGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTGGGGACTGAGACCATTTCGCTCGGCCGCGTTGGGGATGATTTTTGGTGCACCGACCCTTCCGGAGATCCGAACGGCACATTTTGGCTACAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCCTGTGGATGGGCAACTTCATACACCCTGACTGGGACATGTTTCAATCCACCCACCCATGTGCTGAGTTCCACGCCGCTTCACGGGCTGTCTCCGGGGGACCAATATATGTCAGCGACCACGTCGGGAAACACAACTTCCAGCTCCTGAAAACCCTCGTCTTGCCCGATGGGTCGCTTCTGAGGTGCCAACACTACGCCCTTCCCTCAAGAGATTGCCTGTTCCAGGACCCATTACATGATGGGAAAACCATGCTCAAGATTTGGAACCTTAACAAATACACAGGAGTTTTAGGAGCATTCAACTGCCAAGGAGGAGGGTGGTGCAGAGAAACACGAAGAAACAAGAGCGCCTCCGAGTACTCCCGCACCGTTTCATGCTTGGCAAACCCGAGTAAAGACATAGAGTGGAGCGCCGGGAAGAGTCCCATCTCCACCAAAGATGTGGACCTTTTTGCAGTGTACATGTTTCAGGAGAAGACGATGAAGCTGTTGAAGCCATCAGAGAGCCTGGAGATCTCACTGGATCCATTCAAATTTGAACTCCTCACAGTCTCTCCTGTGAAGGTGTTGCCCAGAAATAATAACAATTCAATTCAGTTTGCTCCATTCGGACTGGTGAACATGCTCAACGGTGGCGGGGCGGTTGAGTGGGTGGAGTTGGATGAAGATGAAGATAGGGTGAAAATTGGAGTGAAGGGATGTGGAGAAATGAAGGCATTTGCATCTGAAAAACCAACTACATGTAAGATCAATGGAGAGGGTGTGAAGTTCAGTTACGAGGCCCATACGGTTGGGGTTCAAGTTCCTTGGCCTAGTTCATCACAAGTGTCAATTGTAGAGTACTTGTTCTGA
Protein Sequence
  • >Vitvi17g00885_P001
    MAPSLSKGAPDVMGLEDGQSSSSITLQGSDFLANGHPVLTEVPSNIVAIPSPSSPGNKAKTMVGCFVGFEAGEAKSRHVVPVGKLQEIPFMSIFRFKVWWTTHWVGTRGGDVEHETQMMILDKSDMGRPYVLLLPLIEGPFRASLQPGEDDNVDICVESGSTSVRTSAFRSCLYMHVGDNPYELVKDAMKVVRVHLGTFKLLEEKSPPGIVDKFGWCTWDAFYLKVHPEGVWEGVKGLVEGGCPPGMVLIDDGWQSIGHDDEPISDQEGINRTAAGEQMPCRLIKFEENYKFREYESPRVPQEKGMGAFVRDLKDEFKSVEHVYVWHALCGYWGGIRPNVPGMPESRVIAPKLSQGLQMTMEDLAVDKIVNNGVGLVPPESVAEMYDGLHSRLQSVGVDGVKVDVIHLLEMVAEEYGGRVELAKAYYKALTASVRKHFKGNGVIASMEHCNDFMFLGTETISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAVSGGPIYVSDHVGKHNFQLLKTLVLPDGSLLRCQHYALPSRDCLFQDPLHDGKTMLKIWNLNKYTGVLGAFNCQGGGWCRETRRNKSASEYSRTVSCLANPSKDIEWSAGKSPISTKDVDLFAVYMFQEKTMKLLKPSESLEISLDPFKFELLTVSPVKVLPRNNNNSIQFAPFGLVNMLNGGGAVEWVELDEDEDRVKIGVKGCGEMKAFASEKPTTCKINGEGVKFSYEAHTVGVQVPWPSSSQVSIVEYLF