Gene Details:
- Gene ID: Vitvi17g00885
- Gene Symbol: RafS
- Gene Name: galactinol–sucrose galactosyltransferase
- Genome: Vitis vinifera PN40024.v4
- Species: Vitis vinifera
Functional Descriptions:
- Genetic variation of VIT_17s0000g08960 coding for a raffinose synthase was further investigated by resequencing the gene of 85 individuals since a SNP located in the region (chr17_10,497,222_C_T) was significantly associated with stomatal conductance.
- These genotypes were selected both to represent putatively different classes of response to water stress and based on the SNP chr17_10,497,222_C_T at the candidate gene VIT_17s0000g08960
- The analysis of the VIT_17s0000g08960 transcripts during water deficit revealed that this gene was modulated only in SO4 vines. A significantly higher expression was detected after four days, when plants start to perceive the symptoms of stress, indicating that it might be implicated in early response to drought stress.
Function-related keywords:
- drought , stress , drought-stress , stomatal , stress-response , drought-stress-response , drought-response
Literature:
- Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis. DOI: 10.1186/s12870-020-02739-z ; PMID: 33407127
Related News:
Gene Resources:
Orthologs:
Sequences:
cDNA Sequence
- >Vitvi17g00885_t001
CATAACGGTTGTTAGTGCTTTAATTTTTTGTCTGCCTTTTCATTTCCATGGCTCCCAGCTTGAGCAAAGGTGCTCCGGATGTAATGGGGTTGGAGGACGGTCAGTCATCGTCATCGATCACCCTTCAGGGTTCTGATTTTTTGGCTAATGGCCACCCAGTTCTCACGGAAGTCCCTTCTAACATTGTGGCCATTCCATCACCCTCTAGTCCTGGAAACAAGGCCAAAACCATGGTGGGGTGCTTCGTGGGGTTCGAGGCCGGCGAGGCCAAGAGCCGGCACGTCGTCCCCGTCGGGAAGCTCCAGGAAATACCGTTCATGAGCATATTCAGATTCAAGGTGTGGTGGACCACCCACTGGGTAGGAACCCGCGGAGGAGATGTGGAGCACGAGACCCAGATGATGATTCTGGACAAATCGGACATGGGTCGACCCTATGTTCTCCTCCTCCCACTCATAGAAGGTCCCTTCAGAGCCTCTCTCCAGCCGGGAGAAGACGACAACGTCGACATCTGCGTGGAAAGCGGCTCCACCTCCGTGCGCACCTCCGCCTTCCGGAGCTGCCTCTACATGCACGTAGGAGACAACCCTTATGAACTAGTGAAGGACGCAATGAAAGTGGTGAGGGTCCATCTGGGGACCTTCAAGCTTTTGGAAGAGAAGAGCCCTCCAGGTATAGTAGACAAATTTGGCTGGTGTACATGGGATGCATTTTACCTTAAAGTACACCCCGAAGGTGTTTGGGAAGGAGTGAAGGGCCTAGTGGAGGGTGGGTGCCCTCCTGGCATGGTCCTAATAGACGACGGATGGCAGTCCATCGGTCACGACGATGAACCCATCTCCGACCAAGAAGGCATTAACAGAACCGCCGCGGGTGAGCAAATGCCATGTAGGCTCATAAAATTTGAGGAAAACTACAAGTTTAGGGAGTATGAGAGTCCTAGGGTACCCCAGGAGAAGGGTATGGGGGCATTTGTTAGGGACCTCAAGGATGAGTTTAAGAGCGTAGAACATGTGTATGTGTGGCATGCCCTTTGTGGATATTGGGGTGGGATCAGACCCAATGTCCCAGGCATGCCTGAGTCTAGGGTCATCGCTCCTAAGCTGTCACAGGGTTTGCAGATGACTATGGAGGATTTGGCCGTGGACAAGATCGTCAACAATGGTGTGGGGCTGGTGCCGCCGGAGTCGGTGGCGGAAATGTACGACGGCCTCCACTCTCGGCTGCAATCGGTTGGCGTTGATGGAGTCAAGGTTGATGTGATCCACTTGCTAGAGATGGTAGCAGAGGAATATGGTGGGCGAGTGGAGCTGGCAAAAGCCTATTACAAGGCACTGACTGCATCGGTAAGGAAACATTTCAAAGGGAATGGTGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTGGGGACTGAGACCATTTCGCTCGGCCGCGTTGGGGATGATTTTTGGTGCACCGACCCTTCCGGAGATCCGAACGGCACATTTTGGCTACAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCCTGTGGATGGGCAACTTCATACACCCTGACTGGGACATGTTTCAATCCACCCACCCATGTGCTGAGTTCCACGCCGCTTCACGGGCTGTCTCCGGGGGACCAATATATGTCAGCGACCACGTCGGGAAACACAACTTCCAGCTCCTGAAAACCCTCGTCTTGCCCGATGGGTCGCTTCTGAGGTGCCAACACTACGCCCTTCCCTCAAGAGATTGCCTGTTCCAGGACCCATTACATGATGGGAAAACCATGCTCAAGATTTGGAACCTTAACAAATACACAGGAGTTTTAGGAGCATTCAACTGCCAAGGAGGAGGGTGGTGCAGAGAAACACGAAGAAACAAGAGCGCCTCCGAGTACTCCCGCACCGTTTCATGCTTGGCAAACCCGAGTAAAGACATAGAGTGGAGCGCCGGGAAGAGTCCCATCTCCACCAAAGATGTGGACCTTTTTGCAGTGTACATGTTTCAGGAGAAGACGATGAAGCTGTTGAAGCCATCAGAGAGCCTGGAGATCTCACTGGATCCATTCAAATTTGAACTCCTCACAGTCTCTCCTGTGAAGGTGTTGCCCAGAAATAATAACAATTCAATTCAGTTTGCTCCATTCGGACTGGTGAACATGCTCAACGGTGGCGGGGCGGTTGAGTGGGTGGAGTTGGATGAAGATGAAGATAGGGTGAAAATTGGAGTGAAGGGATGTGGAGAAATGAAGGCATTTGCATCTGAAAAACCAACTACATGTAAGATCAATGGAGAGGGTGTGAAGTTCAGTTACGAGGCCCATACGGTTGGGGTTCAAGTTCCTTGGCCTAGTTCATCACAAGTGTCAATTGTAGAGTACTTGTTCTGA
CDS Sequence
- >Vitvi17g00885_t001
ATGGCTCCCAGCTTGAGCAAAGGTGCTCCGGATGTAATGGGGTTGGAGGACGGTCAGTCATCGTCATCGATCACCCTTCAGGGTTCTGATTTTTTGGCTAATGGCCACCCAGTTCTCACGGAAGTCCCTTCTAACATTGTGGCCATTCCATCACCCTCTAGTCCTGGAAACAAGGCCAAAACCATGGTGGGGTGCTTCGTGGGGTTCGAGGCCGGCGAGGCCAAGAGCCGGCACGTCGTCCCCGTCGGGAAGCTCCAGGAAATACCGTTCATGAGCATATTCAGATTCAAGGTGTGGTGGACCACCCACTGGGTAGGAACCCGCGGAGGAGATGTGGAGCACGAGACCCAGATGATGATTCTGGACAAATCGGACATGGGTCGACCCTATGTTCTCCTCCTCCCACTCATAGAAGGTCCCTTCAGAGCCTCTCTCCAGCCGGGAGAAGACGACAACGTCGACATCTGCGTGGAAAGCGGCTCCACCTCCGTGCGCACCTCCGCCTTCCGGAGCTGCCTCTACATGCACGTAGGAGACAACCCTTATGAACTAGTGAAGGACGCAATGAAAGTGGTGAGGGTCCATCTGGGGACCTTCAAGCTTTTGGAAGAGAAGAGCCCTCCAGGTATAGTAGACAAATTTGGCTGGTGTACATGGGATGCATTTTACCTTAAAGTACACCCCGAAGGTGTTTGGGAAGGAGTGAAGGGCCTAGTGGAGGGTGGGTGCCCTCCTGGCATGGTCCTAATAGACGACGGATGGCAGTCCATCGGTCACGACGATGAACCCATCTCCGACCAAGAAGGCATTAACAGAACCGCCGCGGGTGAGCAAATGCCATGTAGGCTCATAAAATTTGAGGAAAACTACAAGTTTAGGGAGTATGAGAGTCCTAGGGTACCCCAGGAGAAGGGTATGGGGGCATTTGTTAGGGACCTCAAGGATGAGTTTAAGAGCGTAGAACATGTGTATGTGTGGCATGCCCTTTGTGGATATTGGGGTGGGATCAGACCCAATGTCCCAGGCATGCCTGAGTCTAGGGTCATCGCTCCTAAGCTGTCACAGGGTTTGCAGATGACTATGGAGGATTTGGCCGTGGACAAGATCGTCAACAATGGTGTGGGGCTGGTGCCGCCGGAGTCGGTGGCGGAAATGTACGACGGCCTCCACTCTCGGCTGCAATCGGTTGGCGTTGATGGAGTCAAGGTTGATGTGATCCACTTGCTAGAGATGGTAGCAGAGGAATATGGTGGGCGAGTGGAGCTGGCAAAAGCCTATTACAAGGCACTGACTGCATCGGTAAGGAAACATTTCAAAGGGAATGGTGTAATTGCTAGCATGGAGCACTGCAATGACTTCATGTTCCTGGGGACTGAGACCATTTCGCTCGGCCGCGTTGGGGATGATTTTTGGTGCACCGACCCTTCCGGAGATCCGAACGGCACATTTTGGCTACAAGGGTGTCACATGGTGCATTGTGCCTACAACAGCCTGTGGATGGGCAACTTCATACACCCTGACTGGGACATGTTTCAATCCACCCACCCATGTGCTGAGTTCCACGCCGCTTCACGGGCTGTCTCCGGGGGACCAATATATGTCAGCGACCACGTCGGGAAACACAACTTCCAGCTCCTGAAAACCCTCGTCTTGCCCGATGGGTCGCTTCTGAGGTGCCAACACTACGCCCTTCCCTCAAGAGATTGCCTGTTCCAGGACCCATTACATGATGGGAAAACCATGCTCAAGATTTGGAACCTTAACAAATACACAGGAGTTTTAGGAGCATTCAACTGCCAAGGAGGAGGGTGGTGCAGAGAAACACGAAGAAACAAGAGCGCCTCCGAGTACTCCCGCACCGTTTCATGCTTGGCAAACCCGAGTAAAGACATAGAGTGGAGCGCCGGGAAGAGTCCCATCTCCACCAAAGATGTGGACCTTTTTGCAGTGTACATGTTTCAGGAGAAGACGATGAAGCTGTTGAAGCCATCAGAGAGCCTGGAGATCTCACTGGATCCATTCAAATTTGAACTCCTCACAGTCTCTCCTGTGAAGGTGTTGCCCAGAAATAATAACAATTCAATTCAGTTTGCTCCATTCGGACTGGTGAACATGCTCAACGGTGGCGGGGCGGTTGAGTGGGTGGAGTTGGATGAAGATGAAGATAGGGTGAAAATTGGAGTGAAGGGATGTGGAGAAATGAAGGCATTTGCATCTGAAAAACCAACTACATGTAAGATCAATGGAGAGGGTGTGAAGTTCAGTTACGAGGCCCATACGGTTGGGGTTCAAGTTCCTTGGCCTAGTTCATCACAAGTGTCAATTGTAGAGTACTTGTTCTGA
Protein Sequence
- >Vitvi17g00885_P001
MAPSLSKGAPDVMGLEDGQSSSSITLQGSDFLANGHPVLTEVPSNIVAIPSPSSPGNKAKTMVGCFVGFEAGEAKSRHVVPVGKLQEIPFMSIFRFKVWWTTHWVGTRGGDVEHETQMMILDKSDMGRPYVLLLPLIEGPFRASLQPGEDDNVDICVESGSTSVRTSAFRSCLYMHVGDNPYELVKDAMKVVRVHLGTFKLLEEKSPPGIVDKFGWCTWDAFYLKVHPEGVWEGVKGLVEGGCPPGMVLIDDGWQSIGHDDEPISDQEGINRTAAGEQMPCRLIKFEENYKFREYESPRVPQEKGMGAFVRDLKDEFKSVEHVYVWHALCGYWGGIRPNVPGMPESRVIAPKLSQGLQMTMEDLAVDKIVNNGVGLVPPESVAEMYDGLHSRLQSVGVDGVKVDVIHLLEMVAEEYGGRVELAKAYYKALTASVRKHFKGNGVIASMEHCNDFMFLGTETISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAVSGGPIYVSDHVGKHNFQLLKTLVLPDGSLLRCQHYALPSRDCLFQDPLHDGKTMLKIWNLNKYTGVLGAFNCQGGGWCRETRRNKSASEYSRTVSCLANPSKDIEWSAGKSPISTKDVDLFAVYMFQEKTMKLLKPSESLEISLDPFKFELLTVSPVKVLPRNNNNSIQFAPFGLVNMLNGGGAVEWVELDEDEDRVKIGVKGCGEMKAFASEKPTTCKINGEGVKFSYEAHTVGVQVPWPSSSQVSIVEYLF