Information report for TaVRN1-D1
Gene Details
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Functional Descriptions
- The vernalization gene TaVRN1 is among the positive dosage effect genes in the T. durum‒H. villosa and T. turgidum‒Ae. tauschii amphiploids.
- The expression levels of TaVRN1 homologs are positively correlated with the grain size and weight.
- The TaVRN1-B1 or TaVRN1-D1 mutation shows delayed florescence, decreased cell size, grain size, and grain yield.
- TaVRN1, that played a positive role in regulating grain size.
Functional Keywords
- grain , grain-size , grain-yield , yield , grain-weight , vernalization
Literature and News
Gene Resources
- NCBI ID: AY616454.1
- UniProt accessions: Q5YA48
- EMBL: AY616454
- AlphaFoldDB: Q5YA48
- GO: GO:0000977 , GO:0005634 , GO:0045944 , GO:0046983
- InterPro: IPR002100 , IPR033896 , IPR036879 , IPR050142
- PANTHER: PTHR48019
- SUPFAM: SSF55455
- PROSITE: PS00350 , PS50066
- Gene3D: 3.40.1810.10
- SMR: Q5YA48
- CDD: cd00265
Sequences
cDNA Sequence
- >TraesCS5D02G401500.1
AGCCCGGTATTGCATACCGCGCTCGGGGCCAGATCCCTTTAAAAACCCCTCCCCCCCTGCCGGAACCCTCGTTTTGGCCTGGCCATCCTCCCTCTCCTCCCCCTCTCTTCCAACCACCTGACAGCCATGGCTCCGCCCCCTCGCCTCCGCCTGCGCCTGTCGGAGTAGCCGTCGCGGTCTGCCGGTGTTGGAGGGTAGGGGCGTAGGGTTGGCCCGGTTCTCGAGCGGAGATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCATATAAGCGTACTATTCAGTAGAGAGTAACAAGTTGCACCGGCCAGTCTGGTGTATGTTGCGGTTGCTAGCACGCCTGACCCCTTGGAGGGGAAAGGAAAAGAAATCAGAGTAAAGTAGCAAGCTGCAGCGATGTGTATATTTCACTTTGTCCACCCCAGTTTCCCTCCCAGCTGGGCTCAATTTACCATGTAATCTATATGTAGCTTGAGTGATGAATTTTCAAGTTTCCATGATACCCGTCTCTAGTGGGATGTTGTTTATGTGAATTAACCTATCAAATATGAGCATTGTGTATATTGTGATTCTTGAAAATAAATAAATCAGGATCTTTGTCTTCGT - >TraesCS5D02G401500.2
AGCCCGGTATTGCATACCGCGCTCGGGGCCAGATCCCTTTAAAAACCCCTCCCCCCCTGCCGGAACCCTCGTTTTGGCCTGGCCATCCTCCCTCTCCTCCCCCTCTCTTCCAACCACCTGACAGCCATGGCTCCGCCCCCTCGCCTCCGCCTGCGCCTGTCGGAGTAGCCGTCGCGGTCTGCCGGTGTTGGAGGGTAGGGGCGTAGGGTTGGCCCGGTTCTCGAGCGGAGATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCATATAAGCGTACTATTCAGTAGAGAGTAACAAGTTGCACCGGCCAGTCTGGTGTATGTTGCGGTTGCTAGCACGCCTGACCCCTTGGAGGGGAAAGGAAAAGAAATCAGAGTAAAGTAGCAAGCTGCAGCGATGTGTATATTTCACTTTGTCCACCCCAGTTTCCCTCCCAGCTGGGCTCAATTTACCATGTAATCTATATGTAGCTTGAGTGATGAATTTTCAAGTTTCCATGATACCCGTCTCTAGTGGGATGTTGTTTATGTGAATTAACCTATCAAATATGAGCATTGTGTATATTGTGATTCTTGAAAATAAATAAATCAGGATCTTTGTCTTCGT - >TraesCS5D02G401500.3
AGCCCGGTATTGCATACCGCGCTCGGGGCCAGATCCCTTTAAAAACCCCTCCCCCCCTGCCGGAACCCTCGTTTTGGCCTGGCCATCCTCCCTCTCCTCCCCCTCTCTTCCAACCACCTGACAGCCATGGCTCCGCCCCCTCGCCTCCGCCTGCGCCTGTCGGAGTAGCCGTCGCGGTCTGCCGGTGTTGGAGGGTAGGGGCGTAGGGTTGGCCCGGTTCTCGAGCGGAGATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCATATAAGCGTACTATTCAGTAGAGAGTAACAAGTTGCACCGGCCAGTCTGGTGTATGTTGCGGTTGCTAGCACGCCTGACCCCTTGGAGGGGAAAGGAAAAGAAATCAGAGTAAAGTAGCAAGCTGCAGCGATGTGTATATTTCACTTTGTCCACCCCAGTTTCCCTCCCAGCTGGGCTCAATTTACCATGTAATCTATATGTAGCTTGAGTGATGAATTTTCAAGTTTCCATGATACCCGTCTCTAGTGGGATGTTGTTTATGTGAATTAACCTATCAAATATGAGCATTGTGTATATTGTGATTCTTGAAAATAAATAAATCAGGATCTTTGTCTTCGT
CDS Sequence
- >TraesCS5D02G401500.1
ATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGA - >TraesCS5D02G401500.2
ATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGA - >TraesCS5D02G401500.3
ATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTGATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGTAAGCTGCCAACCTTGCATACCTGAACCGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTCGAGAAGCAGAAGGCCCAGGCGGCGCAACAAGATCAGACTCAGCCTCAAACAAGCTCTTCTTCTTCTTCCTTCATGATGAGGGATGCTCCCCCTGCCGCAGCTACCAGCATTCATCCAGCGGCGGCAGGCGAGAGGGCAGGGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACTGTGGATGGTGAGCCACATCAACGGCTGA
Protein Sequence
- >TraesCS5D02G401500.1
MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFSTESCMDKILERYERYSYAEKVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKNQLMHESISELQKKVSCQPCIPEPERSLQEENKVLQKELVEKQKAQAAQQDQTQPQTSSSSSSFMMRDAPPAAATSIHPAAAGERAGDAAVQPQAPPRTGLPLWMVSHING - >TraesCS5D02G401500.2
MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFSTESCMDKILERYERYSYAEKVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKNQLMHESISELQKKVSCQPCIPEPERSLQEENKVLQKELVEKQKAQAAQQDQTQPQTSSSSSSFMMRDAPPAAATSIHPAAAGERAGDAAVQPQAPPRTGLPLWMVSHING - >TraesCS5D02G401500.3
MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFSTESCMDKILERYERYSYAEKVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKNQLMHESISELQKKVSCQPCIPEPERSLQEENKVLQKELVEKQKAQAAQQDQTQPQTSSSSSSFMMRDAPPAAATSIHPAAAGERAGDAAVQPQAPPRTGLPLWMVSHING