Information report for TraesCS5A02G542600
Gene Details
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Functional Descriptions
- We identified putative candidate genes that are potentially involved in metal uptake, transport, and assimilation, including TraesCS5A02G542600 on chromosome 5A, which was annotated as a Major Facilitator Superfamily transporter and acted on all the minerals except K.
- TraesCS5A02G542600 was highly expressed in seed coat, and to a lesser extent in the peduncle, awns, and lemma.
- TraesCS5A02G542600 at 5A showed the highest expression in most of the organs and tissues, indicating that they play vital roles during growth, filling, and development.
- It was linked to the gene TraesCS5A02G542600, which encodes a transmembrane transporter belonging to the Major Facilitator Superfamily (MSF).
Functional Keywords
- growth , development , seed , transporter , metal-transport , lemma , seed-development , seed-growth , as-transport , seed-filling , peduncle
Literature and News
Gene Resources
- NCBI ID:
- UniProt accessions: A0A3B6KUM3
- AlphaFoldDB: A0A3B6KUM3
- EnsemblPlants: TraesCS5A02G542600.1
- Gramene: TraesCS5A02G542600.1
- GO: GO:0015145 , GO:0015293 , GO:0016020
- InterPro: IPR003663 , IPR005828 , IPR005829
- PANTHER: PTHR23500 , PTHR23500:SF564
- SUPFAM: SSF103473
- PROSITE: PS00216 , PS00217 , PS50850
- Gene3D: 1.20.1250.20
- SMR: A0A3B6KUM3
- CDD: cd17361
Sequences
cDNA Sequence
- >TraesCS5A02G542600.1
CCCATCCCATCCCAAGGGGCTCTCACTGGCTCAGTCCCCACTGCTGCTGGCTGAGCTCTCCCCTTCCCCCCAAATTCATCTCCAACTCCAGCCAAGAATTAATCAATCAATGGCGATAGGGGGGGCGTTCGTGGAGGGCCCGGCGGGCGGCGCCGGGTACAGCGGCCGGGTCACCTCCTTCGTCGTCCTCTCCTGCATCGTCGCCGGCAGCGGCGGCATCCTCTTCGGCTACGACCTCGGAATCTCAGGCGGCGTCACGTCCATGGAGTCGTTCCTCAAGAAATTCTTCCCGGACGTGTACCACCAGATGAACGGCGACAAGGCCGCCGTCTCCAACTACTGCCGCTTCGACAGCGAGCTGCTCACCGTCTTCACCTCCTCCCTCTACGTCGCCGGCCTCGTCGCCACCCTCTTTGCCTCCACCGTCACCACCCGCTACGGCCGCCGCGCCTCCATCCTCATCGGCGGCTCCGTCTTCATCGCCGGATCCGCATTCGGGGGCGCCGCCGTCAACGTCTACATGCTCCTCGTCAACCGCATCCTCCTCGGCATCGGCCTCGGATTCACCAACCAGTCGATTCCACTGTACCTCTCGGAAATGGCGCCGCCGCAGTACCGTGGCGCCATCAACAACGGCTTTGAGCTCTGTATCAGCATCGGCATCCTCATTGCGAACGTTATCAACTATGGAGTGCAGAAAATCGAAGGAGGATGGGGGTGGAGGATATCACTGTCCATGGCTGCTGTCCCCGCTGCATTTCTGACTATCGGTGCGATCTTCCTTCCTGAGACCCCGAGCTTCCTGATCCAGCGTGATGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGATGGGGGTTCAGAAAGAGCTCGACGATCTGGTCACCGCTAGCAACATATCCAGAGCAATCAAGAACCCGTACCGGAACATCCTGAAGAAGAAGTACAGGCCGCAGCTCGTGATAGCGCTCCTCATTCCTTTCTTCAACCAGGTCACGGGAATCAACGTGATCAACTTCTATGCGCCGGTCATGTTCCGGACCATTGGGCTAGGGGAGAGTGCAGCACTCATGTCAGCGGTCGTGACACGCCTCTGCGCCACAGTCGCCAACATCGTGGCCATGATCGTCGTCGACAAGTTCGGGCGAAGAAAGCTCTTGCTGGGTTCGCCTGGTCCTGGGGACCTCTCACCTACCTGGTGCCAACAGAGATCTGCCCGCTGGAGATCAGGTCGGCAGGGCAGAGCGTTGTGATTGCGGTCATCTTCCTGATGACCTTTGTGATCGGGCAGACGTTTCTCAACATGCTGTGCCATCTCAAGTTCGGCACCTTCTTCCTGTTTGGCGGGTGGGTGTGCGTGATGACGCTGTTCGTCTTCTTCTTCCTGCCGGAGACGAAGCAGCTGCCCATGGAGCAGATGGAGCAGGTGTGGAGGAAGCACTGGTTCTGGAAGAGGATAATTGGGGAGGGGGAAGAAGAGGTGGATCAGGCACAAACTGGTGCAGGAGC - >TraesCS5A02G542600.2
CCCATCCCATCCCAAGGGGCTCTCACTGGCTCAGTCCCCACTGCTGCTGGCTGAGCTCTCCCCTTCCCCCCAAATTCATCTCCAACTCCAGCCAAGAATTAATCAATCAATGGCGATAGGGGGGGCGTTCGTGGAGGGCCCGGCGGGCGGCGCCGGGTACAGCGGCCGGGTCACCTCCTTCGTCGTCCTCTCCTGCATCGTCGCCGGCAGCGGCGGCATCCTCTTCGGCTACGACCTCGGAATCTCAGGCGGCGTCACGTCCATGGAGTCGTTCCTCAAGAAATTCTTCCCGGACGTGTACCACCAGATGAACGGCGACAAGGCCGCCGTCTCCAACTACTGCCGCTTCGACAGCGAGCTGCTCACCGTCTTCACCTCCTCCCTCTACGTCGCCGGCCTCGTCGCCACCCTCTTTGCCTCCACCGTCACCACCCGCTACGGCCGCCGCGCCTCCATCCTCATCGGCGGCTCCGTCTTCATCGCCGGATCCGCATTCGGGGGCGCCGCCGTCAACGTCTACATGCTCCTCGTCAACCGCATCCTCCTCGGCATCGGCCTCGGATTCACCAACCAGTCGATTCCACTGTACCTCTCGGAAATGGCGCCGCCGCAGTACCGTGGCGCCATCAACAACGGCTTTGAGCTCTGTATCAGCATCGGCATCCTCATTGCGAACGTTATCAACTATGGAGTGCAGAAAATCGAAGGAGGATGGGGGTGGAGGATATCACTGTCCATGGCTGCTGTCCCCGCTGCATTTCTGACTATCGGTGCGATCTTCCTTCCTGAGACCCCGAGCTTCCTGATCCAGCGTGATGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGATGGGGGTTCAGAAAGAGCTCGACGATCTGGTCACCGCTAGCAACATATCCAGAGCAATCAAGAACCCGTACCGGAACATCCTGAAGAAGAAGTACAGGCCGCAGCTCGTGATAGCGCTCCTCATTCCTTTCTTCAACCAGGTCACGGGAATCAACGTGATCAACTTCTATGCGCCGGTCATGTTCCGGACCATTGGGCTAGGGGAGAGTGCAGCACTCATGTCAGCGGTCGTGACACGCCTCTGCGCCACAGTCGCCAACATCGTGGCCATGATCGTCGTCGACAAGTTCGGGCGAAGAAAGCTCTTGCTGGGTTCGCCTGGTCCTGGGGACCTCTCACCTACCTGGTGCCAACAGAGATCTGCCCGCTGGAGATCAGGTCGGCAGGGCAGAGCGTTGTGATTGCGGTCATCTTCCTGATGACCTTTGTGATCGGGCAGACGTTTCTCAACATGCTGTGCCATCTCAAGTTCGGCACCTTCTTCCTGTTTGGCGGGTGGGTGTGCGTGATGACGCTGTTCGTCTTCTTCTTCCTGCCGGAGACGAAGCAGCTGCCCATGGAGCAGATGGAGCAGGTGTGGAGGAAGCACTGGTTCTGGAAGAGGATAATTGGGGAGGGGGAAGAAGAGGTGGATCAGGCACAAACTGGTGCAGGAGC
CDS Sequence
- >TraesCS5A02G542600.1
ATGGCGATAGGGGGGGCGTTCGTGGAGGGCCCGGCGGGCGGCGCCGGGTACAGCGGCCGGGTCACCTCCTTCGTCGTCCTCTCCTGCATCGTCGCCGGCAGCGGCGGCATCCTCTTCGGCTACGACCTCGGAATCTCAGGCGGCGTCACGTCCATGGAGTCGTTCCTCAAGAAATTCTTCCCGGACGTGTACCACCAGATGAACGGCGACAAGGCCGCCGTCTCCAACTACTGCCGCTTCGACAGCGAGCTGCTCACCGTCTTCACCTCCTCCCTCTACGTCGCCGGCCTCGTCGCCACCCTCTTTGCCTCCACCGTCACCACCCGCTACGGCCGCCGCGCCTCCATCCTCATCGGCGGCTCCGTCTTCATCGCCGGATCCGCATTCGGGGGCGCCGCCGTCAACGTCTACATGCTCCTCGTCAACCGCATCCTCCTCGGCATCGGCCTCGGATTCACCAACCAGTCGATTCCACTGTACCTCTCGGAAATGGCGCCGCCGCAGTACCGTGGCGCCATCAACAACGGCTTTGAGCTCTGTATCAGCATCGGCATCCTCATTGCGAACGTTATCAACTATGGAGTGCAGAAAATCGAAGGAGGATGGGGGTGGAGGATATCACTGTCCATGGCTGCTGTCCCCGCTGCATTTCTGACTATCGGTGCGATCTTCCTTCCTGAGACCCCGAGCTTCCTGATCCAGCGTGATGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGATGGGGGTTCAGAAAGAGCTCGACGATCTGGTCACCGCTAGCAACATATCCAGAGCAATCAAGAACCCGTACCGGAACATCCTGAAGAAGAAGTACAGGCCGCAGCTCGTGATAGCGCTCCTCATTCCTTTCTTCAACCAGGTCACGGGAATCAACGTGATCAACTTCTATGCGCCGGTCATGTTCCGGACCATTGGGCTAGGGGAGAGTGCAGCACTCATGTCAGCGGTCGTGACACGCCTCTGCGCCACAGTCGCCAACATCGTGGCCATGATCGTCGTCGACAAGTTCGGGCGAAGAAAGCTCTTGCTGGGTTCGCCTGGTCCTGGGGACCTCTCACCTACCTGGTGCCAACAGAGATCTGCCCGCTGGAGATCAGGTCGGCAGGGCAGAGCGTTGTGA - >TraesCS5A02G542600.2
ATGGCGATAGGGGGGGCGTTCGTGGAGGGCCCGGCGGGCGGCGCCGGGTACAGCGGCCGGGTCACCTCCTTCGTCGTCCTCTCCTGCATCGTCGCCGGCAGCGGCGGCATCCTCTTCGGCTACGACCTCGGAATCTCAGGCGGCGTCACGTCCATGGAGTCGTTCCTCAAGAAATTCTTCCCGGACGTGTACCACCAGATGAACGGCGACAAGGCCGCCGTCTCCAACTACTGCCGCTTCGACAGCGAGCTGCTCACCGTCTTCACCTCCTCCCTCTACGTCGCCGGCCTCGTCGCCACCCTCTTTGCCTCCACCGTCACCACCCGCTACGGCCGCCGCGCCTCCATCCTCATCGGCGGCTCCGTCTTCATCGCCGGATCCGCATTCGGGGGCGCCGCCGTCAACGTCTACATGCTCCTCGTCAACCGCATCCTCCTCGGCATCGGCCTCGGATTCACCAACCAGTCGATTCCACTGTACCTCTCGGAAATGGCGCCGCCGCAGTACCGTGGCGCCATCAACAACGGCTTTGAGCTCTGTATCAGCATCGGCATCCTCATTGCGAACGTTATCAACTATGGAGTGCAGAAAATCGAAGGAGGATGGGGGTGGAGGATATCACTGTCCATGGCTGCTGTCCCCGCTGCATTTCTGACTATCGGTGCGATCTTCCTTCCTGAGACCCCGAGCTTCCTGATCCAGCGTGATGGCAATGTCGACGAGGCGAAGATGATGCTCCAGAGGCTGCGTGGCACGATGGGGGTTCAGAAAGAGCTCGACGATCTGGTCACCGCTAGCAACATATCCAGAGCAATCAAGAACCCGTACCGGAACATCCTGAAGAAGAAGTACAGGCCGCAGCTCGTGATAGCGCTCCTCATTCCTTTCTTCAACCAGGTCACGGGAATCAACGTGATCAACTTCTATGCGCCGGTCATGTTCCGGACCATTGGGCTAGGGGAGAGTGCAGCACTCATGTCAGCGGTCGTGACACGCCTCTGCGCCACAGTCGCCAACATCGTGGCCATGATCGTCGTCGACAAGTTCGGGCGAAGAAAGCTCTTGCTGGGTTCGCCTGGTCCTGGGGACCTCTCACCTACCTGGTGCCAACAGAGATCTGCCCGCTGGAGATCAGGTCGGCAGGGCAGAGCGTTGTGA
Protein Sequence
- >TraesCS5A02G542600.1
MAIGGAFVEGPAGGAGYSGRVTSFVVLSCIVAGSGGILFGYDLGISGGVTSMESFLKKFFPDVYHQMNGDKAAVSNYCRFDSELLTVFTSSLYVAGLVATLFASTVTTRYGRRASILIGGSVFIAGSAFGGAAVNVYMLLVNRILLGIGLGFTNQSIPLYLSEMAPPQYRGAINNGFELCISIGILIANVINYGVQKIEGGWGWRISLSMAAVPAAFLTIGAIFLPETPSFLIQRDGNVDEAKMMLQRLRGTMGVQKELDDLVTASNISRAIKNPYRNILKKKYRPQLVIALLIPFFNQVTGINVINFYAPVMFRTIGLGESAALMSAVVTRLCATVANIVAMIVVDKFGRRKLLLGSPGPGDLSPTWCQQRSARWRSGRQGRAL - >TraesCS5A02G542600.2
MAIGGAFVEGPAGGAGYSGRVTSFVVLSCIVAGSGGILFGYDLGISGGVTSMESFLKKFFPDVYHQMNGDKAAVSNYCRFDSELLTVFTSSLYVAGLVATLFASTVTTRYGRRASILIGGSVFIAGSAFGGAAVNVYMLLVNRILLGIGLGFTNQSIPLYLSEMAPPQYRGAINNGFELCISIGILIANVINYGVQKIEGGWGWRISLSMAAVPAAFLTIGAIFLPETPSFLIQRDGNVDEAKMMLQRLRGTMGVQKELDDLVTASNISRAIKNPYRNILKKKYRPQLVIALLIPFFNQVTGINVINFYAPVMFRTIGLGESAALMSAVVTRLCATVANIVAMIVVDKFGRRKLLLGSPGPGDLSPTWCQQRSARWRSGRQGRAL