Information report for TaVRN-A1
Gene Details
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Functional Descriptions
- TaVRN-A1|VRN-1 gene- associated prerequisites of spring growth habit in wild tetraploid wheat T. dicoccoides and the diploid A genome species.
- Spring growth habit in diploid wheats was only partially associated with indels in regulatory regions of the TaVRN-A1|VRN-1 gene.
- The TaVRN-A1|VRN-1 gene is proposed as the main initiating factor of the regulatory cascade initiating flowering.
- Vernalization requirement duration in winter wheat is controlled by TaVRN-A1|VRN-1 at the protein level.
- Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat.
- VRN-A1 has a particular DNA methylation pattern, exhibiting rapid shift within the life cycle of a winter wheat plant following exposure to particular environmental conditions.
- The main objective was to identify and characterize different alleles of TaVRN-A1|VRN-1 genes and to analyze their distribution among accessions.
Functional Keywords
- growth , plant-growth , flowering , vernalization , protein
Literature and News
- associated prerequisites of spring growth habit in wild tetraploid wheat T. dicoccoides and the diploid A genome species. DOI: 10.1186/s12870-015-0473-x ; PMID: 25888295
- Vernalization requirement duration in winter wheat is controlled by TaVRN-A1 at the protein level. DOI: 10.1111/tpj.12326 ; PMID: 24033823
- Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat. DOI: 10.1186/1471-2229-13-209 ; PMID: 24330651
Gene Resources
- NCBI ID: 543351
- UniProt accessions: Q5YA49
- EMBL: AY616452 , AY616453 , AY616458
- AlphaFoldDB: Q5YA49
- GO: GO:0000977 , GO:0005634 , GO:0045944 , GO:0046983
- InterPro: IPR002100 , IPR033896 , IPR036879 , IPR050142
- PANTHER: PTHR48019
- SUPFAM: SSF55455
- PROSITE: PS00350 , PS50066
- Gene3D: 3.40.1810.10
- SMR: Q5YA49
- CDD: cd00265
Sequences
cDNA Sequence
- >XM_044527031.1
GCCGGAATCCTCGTTTTGGCCTGGCCATCCTCCCTCTCCTCCCCTCTCTTCCACCTCACGTCCTCACCCAACCACCTGATAGCCATGGCTCCGCCGCCTCGCCTCCGCCTGCGCCAGTCGGAGTAGCCGTCGCGGTCTGCCGGTGTTGGAGGGTAGGGGCGTAGGGTTGGCCCGGTTCTCGAGCGGAGATGGGGCGGGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTTCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTATTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTCATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTGGAGAAGCAGAAGGCCCATGCGGCGCAGCAAGATCAAACTCAGCCTCAAACCAGCTCTTCATCTTCTTCCTTCATGCTGAGGGATGCTCCCCCTGCCGCAAATACCAGCATTCATCCAGCGGCAACAGGCGAGAGGGCAGAGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACCGTGGATGGTGAGCCACATCAACGGGTGAAGGGCATCCAGCCCATACAGGCGTACTATTCAGTAGAGGGTAACAAGTTGCACCGGCCAGCCTGGTGTATGTTGCGGTTGCTAGCACGCCTGACCCCTTTGGAGGGGAAAGGAAAAGAAATCAGAGTAAAGTAGCAAGCTGCAGCGATGTGTATATTTCACTTTGTCCACCTCAGTTTCCCTCCCAGCTGGGCTGAGATGGCTGTACGAGTAATTTACCATGTAATCTATATGTAGCTTGAGTGATGAATTTTCAAGTTTCCATGATACCCGTCTCTACTGGGTGTTGTTTATGTGAATTAACCTATCAAATATGAGCATTGTGTATATTGTGATTCTTGAAAATAAATAAATCAGGACCTTTATGTCTT
CDS Sequence
- >XM_044527031.1
ATGGGGCGGGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAACCGGCAGGTGACCTTCTCCAAGCGCCGCTCGGGGCTTCTCAAGAAGGCGCACGAGATCTCCGTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAGTTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTATTCTTATGCAGAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGGAAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTCATGGGAGAGGATCTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTGAAACATATCAGATCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAGAAGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTCGTGGAGAAGCAGAAGGCCCATGCGGCGCAGCAAGATCAAACTCAGCCTCAAACCAGCTCTTCATCTTCTTCCTTCATGCTGAGGGATGCTCCCCCTGCCGCAAATACCAGCATTCATCCAGCGGCAACAGGCGAGAGGGCAGAGGATGCGGCAGTGCAGCCGCAGGCCCCACCCCGGACGGGGCTTCCACCGTGGATGGTGAGCCACATCAACGGGTGA
Protein Sequence
- >XM_044527031.1
MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIIFSTKGKLYEFSTESCMDKILERYERYSYAEKVLVSSESEIQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKNQLMHESISELQKKERSLQEENKVLQKELVEKQKAHAAQQDQTQPQTSSSSSSFMLRDAPPAANTSIHPAATGERAEDAAVQPQAPPRTGLPPWMVSHING