Information report for TaRF2b
Gene Details
|
|
Functional Descriptions
- The TaRF2b mutants exhibited delayed flowering, whereas transgenic wheat lines overexpressing TaRF2b showed earlier flowering.
- TaRF2b accelerates winter wheat flowering by regulating the expression of TaVRN1.
- The vernalization-induced long non-coding RNA VAS functions with the transcription factor TaRF2b to promote TaVRN1 expression for flowering in hexaploid wheat.
- TaRF2b recognizes the Sp1 motif within the TaVRN1 proximal promoter region, which is gradually exposed along with the disruption of a loop structure at the TaVRN1 locus during vernalization, to activate the transcription of TaVRN1.
Functional Keywords
Literature and News
Gene Resources
- NCBI ID: 123122225
- UniProt accessions: A0A3B6KMJ8
- EnsemblPlants: TraesCS5A02G308400.1
- Gramene: TraesCS5A02G308400.1
- GO: GO:0003677 , GO:0003700 , GO:0005634
- OMA: YSHIMAS
- InterPro: IPR004827 , IPR044759 , IPR046347
- PANTHER: PTHR13690 , PTHR13690:SF134
- SUPFAM: SSF57959
- PROSITE: PS50217
- Gene3D: 1.20.5.170
- OrthoDB: A0A3B6KMJ8
- SMR: A0A3B6KMJ8
- CDD: cd14703
Homologs
- Brachypodium distachyon: Bradi4g35370.1.p
- Hordeum vulgare: MLOC_51623.1
- Panicum virgatum: Pavir.6KG394700.1.p, Pavir.6NG344200.1.p, Pavir.2NG442400.1.p
- Setaria italica: Seita.2G278200.1.p
- Setaria viridis: Sevir.6G240800.1.p, Sevir.2G288200.1.p
- Zea mays: GRMZM2G037910_P01, GRMZM2G175280_P01, GRMZM2G149150_P01
Sequences
cDNA Sequence
- >TraesCS5A02G308400.1
ATGGACGACAACTCCGCGCACCGCCGCCACCTCCTCCCACTGCCGGGCCCACATGGACGCCCCCGCGCACCGCCGCCGCGTCCTCCGGCTGCCGGGCCCACATGGACGCCTACCACTAGACAGTCCATGCGTGTTCGCCCTCTCATCCCATCGCCACCGACCTCTCATCCCGCCGCCGCCGACCTCTCCTCCTCCATACACCGCCTCCAGCCCTCGCTCCGACTCCCGCCGGCCCACCCTGCCTCCGTAGCCGCCCGTTTCGTCCCGGGCTTCGGCTACTACCGCGTGCCCCCGCCGCCACCGCCGCCGCTGCCGCCGGCGGCGAGCGGTGGCGCAGGATCCCATCACTCGCGCTCGCTGTCGCAACCCCAGTTCTTCTCCATGGACTTTCTCTTCCGGCCCCCGTACCCCGATCCGTCTGCGCCATCAGCGATCGCGCTCTCCCCGCCGCCGCCGTCGGGCTCAGACCGGGGGGCGTCCGGACTGCCGCCGCCGTCGGGCTCCGAGCGGGGGGCGTCCAGACTGCCGCCGCTGCGGGCGGGGCATCAGCGGTCGCAGAGCGACGTTCTCCTCGCGTTCTCCTCCCAGCAGAACCTGCCCATGCCACCTCCGGCGCCGGTGAACGCGGAGGCCCTGGTGGCCGCGAACAACAGCACCCTCGACGGGATCCTCGGCGCCTACAACAAGAGTACGAATGGCCTGGGCGCGGTCGGCTCCTCCGGGCCCGTCGGCCAGGAGCAGCGCGACCAGCTGGACAGCCAAGCGCCCGCTTGGAGCCCCGGTGACAGCAGCGAGAACGAAGCCGAGAGCGCGGACGGCAGCTTGCCCAGGCATTGCCGCAGCTTGTCGGCGGACAGCCTTGTAGGGAAGTTCAAGTTTGGACCGTCCGGCCTGGAGCCGTCCAACTCCAACTCCAACTCCAACCCGCCGCCTCCATCTCCGGGTCCGGGGCCGGGTGCTGCTGCTCGGCTGGCACGCAGTGGAAGTGGTTCCATTGGTGGCGCCGCTGCTCTCTTCGCCAAGGAATTCGCAAACAGTAAGGAATTCAGTGAAGCAGAGAAGAAGGTTATCATGGACAGTGAGCACCTCGCGCAGATTGTGCTGACCGATCCTAAGAGGGTCAGGAGGATCCTAAACAATCGGCTGTCTGCTGCTAAGTCAAAGGAGCGCAAGGCAAAATACATAGTGGAGCTTGAGGGCAAGGTTCAGGTGCTGCAGGGGGAGACTATGAACTTATCTGCACAAGTGAAAATGGTTAAGAAGGGCCAGGCTAGGCTTTCAATTCACAACCATGAGATGAGAATCAGGCTGCAAGCTTTGGAGGAGCAAGCACAGTTGAAAAAGGCTCTGAACGAAGCATTGCATGCTGAGGTCGAACGCCTAAATCTGGTTGTTGCCGAGGCCAGTAATCCTCATATGCCGAACAGTTCAGAGCAACGGATGAGCTCCCAGATGATTCAGCTTCACCAGCTGCAAATTCTGAGGCAACCATCACAGCTCCAGCAAGGTCAGCAACGCCAGCGGAACTTCTAGGATGCTTTCCCAAATGAGATCTTCCAAGGGAAATTTGATACGACAGATTCGGTTAAAAATACCATATGCTCTGGACAATACTTTACTTAGGTCGCGGGAAACAACCATAGGAAGAAAAAAAAACCATCTCTTGTTGTGTCGAAATTATTTTTGTTCAATCCTGGGAAAAACTCCGGTCGATTTTTGAACTGTATAAAGTGTCTGTCTG
CDS Sequence
- >TraesCS5A02G308400.1
ATGGACGACAACTCCGCGCACCGCCGCCACCTCCTCCCACTGCCGGGCCCACATGGACGCCCCCGCGCACCGCCGCCGCGTCCTCCGGCTGCCGGGCCCACATGGACGCCTACCACTAGACAGTCCATGCGTGTTCGCCCTCTCATCCCATCGCCACCGACCTCTCATCCCGCCGCCGCCGACCTCTCCTCCTCCATACACCGCCTCCAGCCCTCGCTCCGACTCCCGCCGGCCCACCCTGCCTCCGTAGCCGCCCGTTTCGTCCCGGGCTTCGGCTACTACCGCGTGCCCCCGCCGCCACCGCCGCCGCTGCCGCCGGCGGCGAGCGGTGGCGCAGGATCCCATCACTCGCGCTCGCTGTCGCAACCCCAGTTCTTCTCCATGGACTTTCTCTTCCGGCCCCCGTACCCCGATCCGTCTGCGCCATCAGCGATCGCGCTCTCCCCGCCGCCGCCGTCGGGCTCAGACCGGGGGGCGTCCGGACTGCCGCCGCCGTCGGGCTCCGAGCGGGGGGCGTCCAGACTGCCGCCGCTGCGGGCGGGGCATCAGCGGTCGCAGAGCGACGTTCTCCTCGCGTTCTCCTCCCAGCAGAACCTGCCCATGCCACCTCCGGCGCCGGTGAACGCGGAGGCCCTGGTGGCCGCGAACAACAGCACCCTCGACGGGATCCTCGGCGCCTACAACAAGAGTACGAATGGCCTGGGCGCGGTCGGCTCCTCCGGGCCCGTCGGCCAGGAGCAGCGCGACCAGCTGGACAGCCAAGCGCCCGCTTGGAGCCCCGGTGACAGCAGCGAGAACGAAGCCGAGAGCGCGGACGGCAGCTTGCCCAGGCATTGCCGCAGCTTGTCGGCGGACAGCCTTGTAGGGAAGTTCAAGTTTGGACCGTCCGGCCTGGAGCCGTCCAACTCCAACTCCAACTCCAACCCGCCGCCTCCATCTCCGGGTCCGGGGCCGGGTGCTGCTGCTCGGCTGGCACGCAGTGGAAGTGGTTCCATTGGTGGCGCCGCTGCTCTCTTCGCCAAGGAATTCGCAAACAGTAAGGAATTCAGTGAAGCAGAGAAGAAGGTTATCATGGACAGTGAGCACCTCGCGCAGATTGTGCTGACCGATCCTAAGAGGGTCAGGAGGATCCTAAACAATCGGCTGTCTGCTGCTAAGTCAAAGGAGCGCAAGGCAAAATACATAGTGGAGCTTGAGGGCAAGGTTCAGGTGCTGCAGGGGGAGACTATGAACTTATCTGCACAAGTGAAAATGGTTAAGAAGGGCCAGGCTAGGCTTTCAATTCACAACCATGAGATGAGAATCAGGCTGCAAGCTTTGGAGGAGCAAGCACAGTTGAAAAAGGCTCTGAACGAAGCATTGCATGCTGAGGTCGAACGCCTAAATCTGGTTGTTGCCGAGGCCAGTAATCCTCATATGCCGAACAGTTCAGAGCAACGGATGAGCTCCCAGATGATTCAGCTTCACCAGCTGCAAATTCTGAGGCAACCATCACAGCTCCAGCAAGGTCAGCAACGCCAGCGGAACTTCTAG
Protein Sequence
- >TraesCS5A02G308400.1
MDDNSAHRRHLLPLPGPHGRPRAPPPRPPAAGPTWTPTTRQSMRVRPLIPSPPTSHPAAADLSSSIHRLQPSLRLPPAHPASVAARFVPGFGYYRVPPPPPPPLPPAASGGAGSHHSRSLSQPQFFSMDFLFRPPYPDPSAPSAIALSPPPPSGSDRGASGLPPPSGSERGASRLPPLRAGHQRSQSDVLLAFSSQQNLPMPPPAPVNAEALVAANNSTLDGILGAYNKSTNGLGAVGSSGPVGQEQRDQLDSQAPAWSPGDSSENEAESADGSLPRHCRSLSADSLVGKFKFGPSGLEPSNSNSNSNPPPPSPGPGPGAAARLARSGSGSIGGAAALFAKEFANSKEFSEAEKKVIMDSEHLAQIVLTDPKRVRRILNNRLSAAKSKERKAKYIVELEGKVQVLQGETMNLSAQVKMVKKGQARLSIHNHEMRIRLQALEEQAQLKKALNEALHAEVERLNLVVAEASNPHMPNSSEQRMSSQMIQLHQLQILRQPSQLQQGQQRQRNF