Information report for TaPRR1-D1
Gene Details
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Functional Descriptions
- In this study, we identified polymorphisms and haplotypes of TaPRR1, demonstrating that natural variations in TaPRR1 are associated with significant differences in yield-related traits including heading date, plant height and thousand grain weight.
- TaPRR1-6A-Hapla showed an earlier heading date, advanced by 0.9 to 1.7%. TaPRR1-6B-Hapla and TaPRR1-6D-Hapla displayed reduced plant height and increased thousand grain weight of up to 13.3 to 26.4% and 6.3 to 17.3%, respectively.
- Subcellular localization and transcriptional activity analysis showed that TaPRR1 is a nuclear localization protein with transcriptional activity controlled by an IR domain.
- The expression profiles of TaPRR1 genes over a 48-h period were characterized by circadian rhythms, which had two peaks under both short- and long- day conditions.
- In addition, geographical distribution analysis indicated higher distribution frequencies of TaPRR1-6A-Hapla, TaPRR1-6B-Haplb, and TaPRR1-6D-Haplb in different agro-ecological production zones.
Functional Keywords
- grain , grain-yield , yield , grain-weight , height , heading-date , plant-height , grain-protein
Literature and News
Gene Resources
- NCBI ID: 123144843
- UniProt accessions: A0A3B6QI04
- EnsemblPlants: TraesCS6D02G207100.1
- Gramene: TraesCS6D02G207100.1
- GO: GO:0000160 , GO:0005634 , GO:0009736 , GO:0048511
- OMA: AHASECR
- InterPro: IPR001789 , IPR010402 , IPR011006 , IPR045279
- PANTHER: PTHR43874 , PTHR43874:SF1
- SUPFAM: SSF52172
- PROSITE: PS50110 , PS51017
- Gene3D: 3.40.50.2300
- OrthoDB: A0A3B6QI04
- SMR: A0A3B6QI04
Sequences
cDNA Sequence
- >TraesCS6D02G207100.2
AAAGAGTGGACATCCCACCGTCGCAGACCAGCCACCGCCCCGAATAGTTTAGCATACCACCAGATAATGGAGCGGGGCGGACTGCGACGGGCGGAGGCACCCGCCGCCGGGCGCGGCCGCCGTTCCTAGTACAGGTCACTGCCGACAGGCCGCAATCCGTCGTCCTCCGGCCGCGGGAACTCGCCGGGAGCCGAGTTGATTGGGGGGTGCCAGCGGCCGCATGCATGGAGGAGGAGGCGTCCGCAGATCCAACAGCCGCCTCGTCCTCCTGCGTCTAACCTCTCTGGCTGCGGGCTCTGCTGATTCGTCCTAACGCGCGCACGGGTGACTGCCTGGGACTTGGGTATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTAGGGGCAGGGGCAGGGGCAGGGCAGCCGTTCGTTGACCGGAGCAAGGTGAGGATCCTCCTCTGCGACAGCGACCCAGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGGTCAGTTCACCTTAGGCTTGTTATTAATCATGTGTTTGCTGCTTGCCGTTGGCCTTATTATTACCAGTACAACTAGTATCACCATTTTCTCTTCTAATGATGTCTCTGGTGCTCGGTGCTGCTGCTTTATTTTTCCAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGATCTGCCAGTTTCGAAGTGCTTCAAGATGCTCAAGTACATTGGCAGGAACAAGGAGCTGCGCCATATCCCCATCATCATGATGTCCAACAGAGACGAGGTTTCTGTCGTTGTCAAGTGCTTGCGGCTCGGGGCAGCAGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTGTGGCGAAGGAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTAGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGACGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATACCTCGAGTCAACATGAATATGAGTCTCCTGCTGTGGACCCTCCAAAAACAGACCAATTGGAAAATTTACCTAGCATTGCGGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAGTCGTCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAACCCATTGGATAATGAACTACAGAGAGAGGGTAATCAGATAGACGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGACAGAATCGACACTAATGGTAAAATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTATGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAGCAAGATGTTTCAGGAAACCCTCCTGTGTATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGACACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACACAGAATGTGTGGTCGTCGGTATCGAGCACACCAATTCTCGAGGAAAGACATAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATTTCTGAATACGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAGCTGAAAGGTCGTATTATATGTGGGAGTGAGGATGATCATTGCTTACTTTGCAACTCGGTACACAAATGCAATGCATTATTCCTGCTAATAGCAATGCATCATTTTGCTTTCACAATACATCCTCAACCCCCAACCCCTCAAAAGAACTTCTGGCATATGTATGGATATTATTGTGGACATTTTGAGCAATTGTATTTTGACAATGTAAGTTAGTATCACTAGTCAGTGATACACATGGCATTGTGACAAACTCTATGACCTCTTTGTCTCTGCGCTTGTCTAGTTTCATTGTCTCTGTTATTTAATACACATAGTATTTGTTTTCACCAAATGCAAGTTGAAGAGCACCATCCAAATTTGCCTAGCGGCAATGATTCTTGTATAGGGGTTGTTTGCTATTGCCTGTGCATTTTAGGCGAAAGTT - >TraesCS6D02G207100.1
AAAGAGTGGACATCCCACCGTCGCAGACCAGCCACCGCCCCGAATAGTTTAGCATACCACCAGATAATGGAGCGGGGCGGACTGCGACGGGCGGAGGCACCCGCCGCCGGGCGCGGCCGCCGTTCCTAGTACAGGTCACTGCCGACAGGCCGCAATCCGTCGTCCTCCGGCCGCGGGAACTCGCCGGGAGCCGAGTTGATTGGGGGGTGCCAGCGGCCGCATGCATGGAGGAGGAGGCGTCCGCAGATCCAACAGCCGCCTCGTCCTCCTGCGTCTAACCTCTCTGGCTGCGGGCTCTGCTGATTCGTCCTAACGCGCGCACGGGTGACTGCCTGGGACTTGGGTATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTAGGGGCAGGGGCAGGGGCAGGGCAGCCGTTCGTTGACCGGAGCAAGGTGAGGATCCTCCTCTGCGACAGCGACCCAGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGGTCAGTTCACCTTAGGCTTGTTATTAATCATGTGTTTGCTGCTTGCCGTTGGCCTTATTATTACCAGTACAACTAGTATCACCATTTTCTCTTCTAATGATGTCTCTGGTGCTCGGTGCTGCTGCTTTATTTTTCCAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGATCTGCCAGTTTCGAAGTGCTTCAAGATGCTCAAGTACATTGGCAGGAACAAGGAGCTGCGCCATATCCCCATCATCATGATGTCCAACAGAGACGAGGTTTCTGTCGTTGTCAAGTGCTTGCGGCTCGGGGCAGCAGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTGTGGCGAAGGAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTAGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGACGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATACCTCGAGTCAACATGAATATGAGTCTCCTGCTGTGGACCCTCCAAAAACAGACCAATTGGAAAATTTACCTAGCATTGCGGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAGTCGTCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAACCCATTGGATAATGAACTACAGAGAGAGGGTAATCAGATAGACGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGACAGAATCGACACTAATGGTAAAATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTATGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAGCAAGATGTTTCAGGAAACCCTCCTGTGTATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGACACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACACAGAATGTGTGGTCGTCGGTATCGAGCACACCAATTCTCGAGGAAAGACATAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATTTCTGAATACGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAGCTGAAAGGTCGTATTATATGTGGGAGTGAGGATGATCATTGCTTACTTTGCAACTCGGTACACAAATGCAATGCATTATTCCTGCTAATAGCAATGCATCATTTTGCTTTCACAATACATCCTCAACCCCCAACCCCTCAAAAGAACTTCTGGCATATGTATGGATATTATTGTGGACATTTTGAGCAATTGTATTTTGACAATGTAAGTTAGTATCACTAGTCAGTGATACACATGGCATTGTGACAAACTCTATGACCTCTTTGTCTCTGCGCTTGTCTAGTTTCATTGTCTCTGTTATTTAATACACATAGTATTTGTTTTCACCAAATGCAAGTTGAAGAGCACCATCCAAATTTGCCTAGCGGCAATGATTCTTGTATAGGGGTTGTTTGCTATTGCCTGTGCATTTTAGGCGAAAGTT
CDS Sequence
- >TraesCS6D02G207100.2
ATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTAGGGGCAGGGGCAGGGGCAGGGCAGCCGTTCGTTGACCGGAGCAAGGTGAGGATCCTCCTCTGCGACAGCGACCCAGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGGTCAGTTCACCTTAGGCTTGTTATTAATCATGTGTTTGCTGCTTGCCGTTGGCCTTATTATTACCAGTACAACTAGTATCACCATTTTCTCTTCTAATGATGTCTCTGGTGCTCGGTGCTGCTGCTTTATTTTTCCAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGATCTGCCAGTTTCGAAGTGCTTCAAGATGCTCAAGTACATTGGCAGGAACAAGGAGCTGCGCCATATCCCCATCATCATGATGTCCAACAGAGACGAGGTTTCTGTCGTTGTCAAGTGCTTGCGGCTCGGGGCAGCAGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTGTGGCGAAGGAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTAGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGACGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATACCTCGAGTCAACATGAATATGAGTCTCCTGCTGTGGACCCTCCAAAAACAGACCAATTGGAAAATTTACCTAGCATTGCGGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAGTCGTCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAACCCATTGGATAATGAACTACAGAGAGAGGGTAATCAGATAGACGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGACAGAATCGACACTAATGGTAAAATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTATGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAGCAAGATGTTTCAGGAAACCCTCCTGTGTATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGACACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACACAGAATGTGTGGTCGTCGGTATCGAGCACACCAATTCTCGAGGAAAGACATAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATTTCTGAATACGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAG - >TraesCS6D02G207100.1
ATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTAGGGGCAGGGGCAGGGGCAGGGCAGCCGTTCGTTGACCGGAGCAAGGTGAGGATCCTCCTCTGCGACAGCGACCCAGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGGTCAGTTCACCTTAGGCTTGTTATTAATCATGTGTTTGCTGCTTGCCGTTGGCCTTATTATTACCAGTACAACTAGTATCACCATTTTCTCTTCTAATGATGTCTCTGGTGCTCGGTGCTGCTGCTTTATTTTTCCAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGATCTGCCAGTTTCGAAGTGCTTCAAGATGCTCAAGTACATTGGCAGGAACAAGGAGCTGCGCCATATCCCCATCATCATGATGTCCAACAGAGACGAGGTTTCTGTCGTTGTCAAGTGCTTGCGGCTCGGGGCAGCAGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTGTGGCGAAGGAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTAGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGACGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATACCTCGAGTCAACATGAATATGAGTCTCCTGCTGTGGACCCTCCAAAAACAGACCAATTGGAAAATTTACCTAGCATTGCGGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAGTCGTCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAACCCATTGGATAATGAACTACAGAGAGAGGGTAATCAGATAGACGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGACAGAATCGACACTAATGGTAAAATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTATGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAGCAAGATGTTTCAGGAAACCCTCCTGTGTATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGACACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACACAGAATGTGTGGTCGTCGGTATCGAGCACACCAATTCTCGAGGAAAGACATAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATTTCTGAATACGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAG
Protein Sequence
- >TraesCS6D02G207100.2
MVGAGEGVRAGGSGAGVGAGAGAGQPFVDRSKVRILLCDSDPDSSQDVLRLLCNCSYQGQFTLGLLLIMCLLLAVGLIITSTTSITIFSSNDVSGARCCCFIFPVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSKCFKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLAEKNFFIDNLELVLSEPSDANTNSTTLLSDETDDKPKGNRNHETNTSSQHEYESPAVDPPKTDQLENLPSIAEDDDKASSPGGMFSRPIKTNLRIAESSAFLAYVKSSTPANNPLDNELQREGNQIDVMDHQGNFSGATDRIDTNGKINIQDEKAFETPMQYPLVCFSSSNLHLEQRNEGQQDVSGNPPVYHYPFYYPGMVEHGMTLHSVQSFQGNINTAQAHTPPTMLHQYNVYHQSHGASMQSYQYSPAGMNVHSSHLSTQNVWSSVSSTPILEERHSRSGRRAAALAKFRQKRKDRCFDKKVRYVNRKKVAETRPRVRGQFVRQASNTDIISTGDDISEYEDDDPSSRDVELVSSPE - >TraesCS6D02G207100.1
MVGAGEGVRAGGSGAGVGAGAGAGQPFVDRSKVRILLCDSDPDSSQDVLRLLCNCSYQGQFTLGLLLIMCLLLAVGLIITSTTSITIFSSNDVSGARCCCFIFPVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSKCFKMLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLAEKNFFIDNLELVLSEPSDANTNSTTLLSDETDDKPKGNRNHETNTSSQHEYESPAVDPPKTDQLENLPSIAEDDDKASSPGGMFSRPIKTNLRIAESSAFLAYVKSSTPANNPLDNELQREGNQIDVMDHQGNFSGATDRIDTNGKINIQDEKAFETPMQYPLVCFSSSNLHLEQRNEGQQDVSGNPPVYHYPFYYPGMVEHGMTLHSVQSFQGNINTAQAHTPPTMLHQYNVYHQSHGASMQSYQYSPAGMNVHSSHLSTQNVWSSVSSTPILEERHSRSGRRAAALAKFRQKRKDRCFDKKVRYVNRKKVAETRPRVRGQFVRQASNTDIISTGDDISEYEDDDPSSRDVELVSSPE