Information report for TaPRR1-B1
Gene Details
|
|
Functional Descriptions
- In this study, we identified polymorphisms and haplotypes of TaPRR1, demonstrating that natural variations in TaPRR1 are associated with significant differences in yield-related traits including heading date, plant height and thousand grain weight.
- TaPRR1-6A-Hapla showed an earlier heading date, advanced by 0.9 to 1.7%. TaPRR1-6B-Hapla and TaPRR1-6D-Hapla displayed reduced plant height and increased thousand grain weight of up to 13.3 to 26.4% and 6.3 to 17.3%, respectively.
- Subcellular localization and transcriptional activity analysis showed that TaPRR1 is a nuclear localization protein with transcriptional activity controlled by an IR domain.
- The expression profiles of TaPRR1 genes over a 48-h period were characterized by circadian rhythms, which had two peaks under both short- and long- day conditions.
- In addition, geographical distribution analysis indicated higher distribution frequencies of TaPRR1-6A-Hapla, TaPRR1-6B-Haplb, and TaPRR1-6D-Haplb in different agro-ecological production zones.
Functional Keywords
- grain , grain-yield , yield , grain-weight , height , heading-date , plant-height , grain-protein
Literature and News
Gene Resources
- NCBI ID: 123137489
- UniProt accessions: A0A126SNS4
- EnsemblPlants: TraesCS6B02G253900.1
- Gramene: TraesCS6B02G253900.1
- GO: GO:0000160 , GO:0005634 , GO:0009736 , GO:0048511
- OMA: SIEVICN
- ExpressionAtlas: TraesCS6B02G253900
- InterPro: IPR001789 , IPR010402 , IPR011006 , IPR045279
- PANTHER: PTHR43874 , PTHR43874:SF1
- SUPFAM: SSF52172
- PROSITE: PS50110 , PS51017
- Gene3D: 3.40.50.2300
- OrthoDB: A0A126SNS4
- SMR: A0A126SNS4
Sequences
cDNA Sequence
- >TraesCS6B02G253900.1
ACCCCATAGTGAAAAGCGAGGAAAAAAGGCGACGGAAATATCTCAAAGAGTGGACATCCCACCGTCGCAGACCAGCCACCGCCCCGAATAGTTTAGCATACCACCAGATAATGGAGCGGGGTGGACTGCGACGGGCGGAGGCAGCCGCCGCCGGGCGCGGCCGCCGTTCCTAGCACAGGTCACTGCTGAACCGGCCGCAACCCATCATCCTCCGGCCGCGGGAGCTCGCCGGGAGCCGAGTTGATTGGGGGGTACCAGCGGCCGCATACATGGAGGAGGACGCGTCCGCAGATCCAACAGCCGCCGCCTCGTCCTCCTGCGTCTACTTCTCCGGCTGCGGGCTCTGCTGATTCGTCGTAACGCGCCCTTGGGAAGTCTCTGCTGATTGCGCACAGGTGGCTGCCTGGGGCTTGGGTATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTGGGGGGAGGGCAGCCGTTCGTCGACCGGAGCAAGGTCAGGATCCTCCTCTGCGACAGCGACCCCGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGACCTGCCAGTCTCCAAGTGCTTCAAGTTGCTCAAGTACATTGGCAGGAACAAGGAACTGCGCCACATCCCCATCATCATGATGTCCAATAGAGACGAGGTTTCTGTTGTTGTCAAGTGCTTGCGGCTCGGGGCAGCGGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTCTGGCGAAGAAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTGGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGATGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATATCTCGAGTCAACATGAATATGAGTCTCCTGCCATGGACCCCCCCAAAACAGACAAATTGGAAAATTTACCTAGCATTGCAGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAATCATCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAATCCATTGGATAATGAACTACAGAGAAAGGGTAATCAGATTGATGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGAGAGAATAGACACTAATAGTAGTATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTGTGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAACAAGATGTTTCAGGAAACCCTCCTGTATATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGGCACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACGCAGAATGTGTGGTCGTCGGTATCAAGCACACCAATTCCCGAGGAAAGACACAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATATCTGAATATGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAGCTGAAAGGTCGTATTATATGTGAAATGGTGTGCGGATGATCATTGCTTACTTTGCAACTCAGTACTCATATGCAATACATTATTCCTGCTAATAGCAATGCATCATTTTGCTTTCACAATACATCCTCAACCCCCAACCCCTCAAAAGAACTTGTGGCATATGTATGGATATTATTGTGGACATTTTGAGCAATTGTATTTTGACAATATAAGTTAGTATCACTAGTCAGTGATACACATGGCATTGTGACAAACTCTATAGCCTCTTTGTCTCTCTGCGCTTGTCTAGTTTCATTGTCTCTGTTCTTTAATACACATGATATTTGTTTTCACCAAATGCAAGTTGAAGAGCACCATCCAAATTTGCCTAGCGGCAATGATTATTGTATAGGGGTTGTTTGCTATTGCCTGTGTGCATTTTAGGTGAAAGTTGCAAAAC
CDS Sequence
- >TraesCS6B02G253900.1
ATGGTGGGCGCCGGCGAGGGGGTTCGCGCTGGCGGCAGCGGCGCCGGGGTGGGGGGAGGGCAGCCGTTCGTCGACCGGAGCAAGGTCAGGATCCTCCTCTGCGACAGCGACCCCGACAGCTCACAGGATGTGCTTCGCCTCCTCTGCAACTGCTCCTACCAAGTGACCTGCGCCAAGTCTCCACGGCAGGTGATCAACGTGCTCAACTGCGAGGGCGCTGAGATAGACATCATCCTGGCCGAGGTCGACCTGCCAGTCTCCAAGTGCTTCAAGTTGCTCAAGTACATTGGCAGGAACAAGGAACTGCGCCACATCCCCATCATCATGATGTCCAATAGAGACGAGGTTTCTGTTGTTGTCAAGTGCTTGCGGCTCGGGGCAGCGGAGTACCTGGTCAAGCCGCTTCGCATGAATGAGCTGTTGAATCTCTGGACCCATGTCTGGCGAAGAAGACGGATGCTTGGTTTGGCCGAGAAAAACTTCTTCATTGACAATCTTGAGTTGGTGCTGTCGGAACCTAGTGATGCCAATACCAATAGCACCACACTCCTTTCGGATGAGACAGATGATAAGCCAAAAGGAAATAGAAATCATGAAACAAATATCTCGAGTCAACATGAATATGAGTCTCCTGCCATGGACCCCCCCAAAACAGACAAATTGGAAAATTTACCTAGCATTGCAGAAGATGATGATAAAGCATCATCTCCAGGAGGAATGTTTTCACGCCCAATAAAGACTAATTTGAGGATAGCTGAATCATCTGCATTTCTAGCATATGTTAAATCAAGCACTCCAGCAAACAATCCATTGGATAATGAACTACAGAGAAAGGGTAATCAGATTGATGTTATGGATCACCAGGGTAATTTCTCTGGTGCGACCGAGAGAATAGACACTAATAGTAGTATAAATATTCAGGATGAAAAAGCTTTTGAGACGCCTGTGCAGTATCCTTTGGTATGCTTTTCTTCCTCTAACTTGCATCTGGAGCAAAGGAATGAGGGCCAACAAGATGTTTCAGGAAACCCTCCTGTATATCATTACCCATTTTATTATCCAGGGATGGTAGAGCATGGCATGGCACTTCATTCAGTTCAAAGTTTCCAAGGAAACATAAACACTGCTCAAGCTCATACACCACCAACAATGCTCCATCAATACAATGTTTATCACCAATCCCATGGTGCATCGATGCAATCGTATCAGTATAGTCCTGCTGGTATGAATGTGCATTCAAGTCATTTGTCAACGCAGAATGTGTGGTCGTCGGTATCAAGCACACCAATTCCCGAGGAAAGACACAGTCGATCTGGCAGGAGAGCTGCAGCACTTGCAAAATTCAGGCAGAAAAGGAAGGACCGCTGTTTTGACAAGAAGGTGAGGTATGTTAATCGGAAGAAAGTTGCTGAAACAAGGCCGAGGGTGCGGGGTCAGTTTGTTAGGCAGGCAAGCAACACAGATATAATTAGCACTGGTGATGATATATCTGAATATGAAGACGATGATCCATCCTCCAGGGACGTTGAGTTGGTTTCTTCACCAGAGTAG
Protein Sequence
- >TraesCS6B02G253900.1
MVGAGEGVRAGGSGAGVGGGQPFVDRSKVRILLCDSDPDSSQDVLRLLCNCSYQVTCAKSPRQVINVLNCEGAEIDIILAEVDLPVSKCFKLLKYIGRNKELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRRRRMLGLAEKNFFIDNLELVLSEPSDANTNSTTLLSDETDDKPKGNRNHETNISSQHEYESPAMDPPKTDKLENLPSIAEDDDKASSPGGMFSRPIKTNLRIAESSAFLAYVKSSTPANNPLDNELQRKGNQIDVMDHQGNFSGATERIDTNSSINIQDEKAFETPVQYPLVCFSSSNLHLEQRNEGQQDVSGNPPVYHYPFYYPGMVEHGMALHSVQSFQGNINTAQAHTPPTMLHQYNVYHQSHGASMQSYQYSPAGMNVHSSHLSTQNVWSSVSSTPIPEERHSRSGRRAAALAKFRQKRKDRCFDKKVRYVNRKKVAETRPRVRGQFVRQASNTDIISTGDDISEYEDDDPSSRDVELVSSPE