Gene Details:
- Gene ID: TraesCS2B02G202700
- Gene Symbol: TaAFP-B
- Gene Name: ninja-family protein 1
- Genome: Chinese_Spring1.0
- Species: Triticum aestivum
Functional Descriptions:
- It is well documented that AtAFP is a negative regulator of ABA signaling that regulates embryo germination and seed dormancy.
- The 4 bp insertion in the promoter of TaAFP-Ba decreased transcript abundance and translation level in transgenic rice. This insertion increased sensitivity to ABA and content of endogenous ABA in mature seeds, leading to a higher seed dormancy and pre-harvest sprouting tolerance in transgenic rice.
- A 4 bp InDel in the Promoter of Wheat Gene TaAFP-B Affecting Seed Dormancy Confirmed in Transgenic Rice.
Function-related keywords:
- seed , seed-germination , tolerance , aba , embryo , dormancy , seed-dormancy , aba-sensitivity
Literature:
- A 4 bp InDel in the Promoter of Wheat Gene TaAFP-B Affecting Seed Dormancy Confirmed in Transgenic Rice. DOI: 10.3389/fpls.2022.837805 ; PMID: 35432414
Related News:
Gene Resources:
- NCBI ID: LOC123044280
- UniProt accessions: A0A3B6C2U1
Sequences:
cDNA Sequence
- >TraesCS2B02G202700.1
GGTTTAATGGAGGGAGCAGTCTAACAACGAAGGAGATTAGAGCGACACGCACGCAGGCCTCCTTCTCTTCTCCTCTCCTCTCCATTCCCATCCCCCCTCTCCCTCCCTCCCCTCTCGCTCGAGGATCCCACACGCCGCGCGCAGGGATCTGATTGCCGCCGATTCTGCTGGCTCTGCTTCCCCGGCGCTCGTCGATTGTTCGTTCCTCCCTGGGCGCTGTGATGTTCTTCCCTCTGGGTTTGGAGACCGAGAATTGCCCGGCGCGGGACGGATTCGCGGCAATGGCGAGGTCTTCCTGAGAATTTGGCCGTCCTTGGAGGTTGGGGGGAGGAGGGATTGGCGTCTGCTTCGCGGCGGGGAATTGCTTGCTCTCTCTCTCTCTGCCGGACGGACATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAATGTCGGAATGTACCTAGGGGGAGAGATGTTCTTTTCCTCTCTTTCCTTTTTTACTCTGAATTTTTAGCTATCATTACAGTGTATTATGTTTAGCGCCCTGCCTCTCCATTGAGTGGAGAGGAATGCAGGGCCTGCCTGAGGTGTTTACTGTAAGTTAAGGGGGTGAACTAATTTGAGAGAATTATCAGCTTCACAGTGTCCACAATGGATATGCTGCTTCAGTCGATACGCGTGGCCTTGCAGTAACTGTAAATGTGTAAGGTTTAGGAGAAGTCGATTTTGCCCTGTTCAGTTACCC - >TraesCS2B02G202700.2
GGTTTAATGGAGGGAGCAGTCTAACAACGAAGGAGATTAGAGCGACACGCACGCAGGCCTCCTTCTCTTCTCCTCTCCTCTCCATTCCCATCCCCCCTCTCCCTCCCTCCCCTCTCGCTCGAGGATCCCACACGCCGCGCGCAGGGATCTGATTGCCGCCGATTCTGCTGGCTCTGCTTCCCCGGCGCTCGTCGATTGTTCGTTCCTCCCTGGGCGCTGTGATGTTCTTCCCTCTGGGTTTGGAGACCGAGAATTGCCCGGCGCGGGACGGATTCGCGGCAATGGCGAGGTCTTCCTGAGAATTTGGCCGTCCTTGGAGGTTGGGGGGAGGAGGGATTGGCGTCTGCTTCGCGGCGGGGAATTGCTTGCTCTCTCTCTCTCTGCCGGACGGACATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAATGTCGGAATGTACCTAGGGGGAGAGATGTTCTTTTCCTCTCTTTCCTTTTTTACTCTGAATTTTTAGCTATCATTACAGTGTATTATGTTTAGCGCCCTGCCTCTCCATTGAGTGGAGAGGAATGCAGGGCCTGCCTGAGGTGTTTACTGTAAGTTAAGGGGGTGAACTAATTTGAGAGAATTATCAGCTTCACAGTGTCCACAATGGATATGCTGCTTCAGTCGATACGCGTGGCCTTGCAGTAACTGTAAATGTGTAAGGTTTAGGAGAAGTCGATTTTGCCCTGTTCAGTTACCC
CDS Sequence
- >TraesCS2B02G202700.1
ATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAA - >TraesCS2B02G202700.2
ATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAA
Protein Sequence
- >TraesCS2B02G202700.1
MASRDFLGRFGGEKGSSSDKAGGGAGEPDEVVELSLGLSLGGCFGANSGRDAKKPRLVRSSSLAAMYSLPTETEEERWRRREMQSLKRLQAKRKRLERRTSMNSGKSGGSSSRDDAQEPLYPSAFQLRRSVVDQGNTSSSMPEQGSADGAEAKSTSSMEISSDNNNNNNASNQNKSLPPPAPSPAGKLPNGIVKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPAPSVFL - >TraesCS2B02G202700.2
MASRDFLGRFGGEKGSSSDKAGGGAGEPDEVVELSLGLSLGGCFGANSGRDAKKPRLVRSSSLAAMYSLPTETEEERWRRREMQSLKRLQAKRKRLERRTSMNSGKSGGSSSRDDAQEPLYPSAFQLRRSVVDQGNTSSSMPEQGSADGAEAKSTSSMEISSDNNNNNNASNQNKSLPPPAPSPAGKLPNGIVKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPAPSVFL