Information report for TaAFP-B
Gene Details
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Functional Descriptions
- It is well documented that AtAFP is a negative regulator of ABA signaling that regulates embryo germination and seed dormancy.
- The 4 bp insertion in the promoter of TaAFP-Ba decreased transcript abundance and translation level in transgenic rice. This insertion increased sensitivity to ABA and content of endogenous ABA in mature seeds, leading to a higher seed dormancy and pre-harvest sprouting tolerance in transgenic rice.
- A 4 bp InDel in the Promoter of Wheat Gene TaAFP-B Affecting Seed Dormancy Confirmed in Transgenic Rice.
Functional Keywords
- seed , seed-germination , tolerance , aba , embryo , dormancy , seed-dormancy , aba-sensitivity
Literature and News
Gene Resources
- NCBI ID: LOC123044280
- UniProt accessions: A0A3B6C2U1
- AlphaFoldDB: A0A3B6C2U1
- EnsemblPlants: TraesCS2B02G202700.1
- Gramene: TraesCS2B02G202700.1
- GO: GO:0005634 , GO:0007165
- InterPro: IPR012463 , IPR031307 , IPR032308 , IPR032310
- PANTHER: PTHR31413 , PTHR31413:SF31
Sequences
cDNA Sequence
- >TraesCS2B02G202700.1
GGTTTAATGGAGGGAGCAGTCTAACAACGAAGGAGATTAGAGCGACACGCACGCAGGCCTCCTTCTCTTCTCCTCTCCTCTCCATTCCCATCCCCCCTCTCCCTCCCTCCCCTCTCGCTCGAGGATCCCACACGCCGCGCGCAGGGATCTGATTGCCGCCGATTCTGCTGGCTCTGCTTCCCCGGCGCTCGTCGATTGTTCGTTCCTCCCTGGGCGCTGTGATGTTCTTCCCTCTGGGTTTGGAGACCGAGAATTGCCCGGCGCGGGACGGATTCGCGGCAATGGCGAGGTCTTCCTGAGAATTTGGCCGTCCTTGGAGGTTGGGGGGAGGAGGGATTGGCGTCTGCTTCGCGGCGGGGAATTGCTTGCTCTCTCTCTCTCTGCCGGACGGACATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAATGTCGGAATGTACCTAGGGGGAGAGATGTTCTTTTCCTCTCTTTCCTTTTTTACTCTGAATTTTTAGCTATCATTACAGTGTATTATGTTTAGCGCCCTGCCTCTCCATTGAGTGGAGAGGAATGCAGGGCCTGCCTGAGGTGTTTACTGTAAGTTAAGGGGGTGAACTAATTTGAGAGAATTATCAGCTTCACAGTGTCCACAATGGATATGCTGCTTCAGTCGATACGCGTGGCCTTGCAGTAACTGTAAATGTGTAAGGTTTAGGAGAAGTCGATTTTGCCCTGTTCAGTTACCC - >TraesCS2B02G202700.2
GGTTTAATGGAGGGAGCAGTCTAACAACGAAGGAGATTAGAGCGACACGCACGCAGGCCTCCTTCTCTTCTCCTCTCCTCTCCATTCCCATCCCCCCTCTCCCTCCCTCCCCTCTCGCTCGAGGATCCCACACGCCGCGCGCAGGGATCTGATTGCCGCCGATTCTGCTGGCTCTGCTTCCCCGGCGCTCGTCGATTGTTCGTTCCTCCCTGGGCGCTGTGATGTTCTTCCCTCTGGGTTTGGAGACCGAGAATTGCCCGGCGCGGGACGGATTCGCGGCAATGGCGAGGTCTTCCTGAGAATTTGGCCGTCCTTGGAGGTTGGGGGGAGGAGGGATTGGCGTCTGCTTCGCGGCGGGGAATTGCTTGCTCTCTCTCTCTCTGCCGGACGGACATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAATGTCGGAATGTACCTAGGGGGAGAGATGTTCTTTTCCTCTCTTTCCTTTTTTACTCTGAATTTTTAGCTATCATTACAGTGTATTATGTTTAGCGCCCTGCCTCTCCATTGAGTGGAGAGGAATGCAGGGCCTGCCTGAGGTGTTTACTGTAAGTTAAGGGGGTGAACTAATTTGAGAGAATTATCAGCTTCACAGTGTCCACAATGGATATGCTGCTTCAGTCGATACGCGTGGCCTTGCAGTAACTGTAAATGTGTAAGGTTTAGGAGAAGTCGATTTTGCCCTGTTCAGTTACCC
CDS Sequence
- >TraesCS2B02G202700.1
ATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAA - >TraesCS2B02G202700.2
ATGGCGTCGAGGGACTTCTTGGGCAGGTTCGGCGGCGAGAAGGGCTCGTCGTCGGACAAGGCGGGGGGCGGCGCCGGCGAGCCCGACGAGGTGGTCGAGCTCAGCCTGGGCCTGTCCCTGGGCGGCTGCTTCGGCGCCAACTCCGGCCGGGACGCCAAGAAGCCGCGGCTGGTGCGCTCCTCCTCCCTCGCCGCCATGTACTCGCTCCCCACCGAGACGGAGGAGGAGCGGTGGCGCCGCCGCGAGATGCAGAGCCTCAAGCGCCTCCAGGCCAAGCGCAAGCGCCTCGAGCGCCGCACCTCCATGAACTCCGGCAAGTCCGGCGGCAGCAGCAGCCGGGACGACGCCCAGGAGCCGCTCTACCCCAGCGCGTTCCAGCTCCGCCGCTCCGTCGTCGACCAGGGGAACACCTCCTCAAGCATGCCGGAGCAAGGTAGTGCTGATGGCGCTGAGGCGAAGAGCACATCGAGCATGGAGATATCTTCTGATAATAATAATAATAACAATGCCAGCAACCAGAACAAGTCCCTCCCGCCGCCGGCACCATCTCCGGCCGGGAAGCTGCCGAACGGCATCGTCAAGGAGCAACCGCCGTTGCGGACCCTCCGGTCGCTGACGATGCGCACGACTAGCACCGGCGACCTGCGGAAGAGCATGATGGAGGACATGCCGATGGTCTCGTCCAAGGTGGACGGCCCCAACGGCAAGAAGATCGACGGCTTCCTCTACAAGTACAGGAAAGGGGAGGAGGTGAGGATAGTGTGCGTCTGCCATGGCAACTTCCTCACGCCGGCGGAGTTCGTGAAGCACGCTGGCGGCGGCGACGTCACGAACCCGCTCAGGCACATCGTCGTCAACCCCGCGCCGTCGGTCTTCTTGTAA
Protein Sequence
- >TraesCS2B02G202700.1
MASRDFLGRFGGEKGSSSDKAGGGAGEPDEVVELSLGLSLGGCFGANSGRDAKKPRLVRSSSLAAMYSLPTETEEERWRRREMQSLKRLQAKRKRLERRTSMNSGKSGGSSSRDDAQEPLYPSAFQLRRSVVDQGNTSSSMPEQGSADGAEAKSTSSMEISSDNNNNNNASNQNKSLPPPAPSPAGKLPNGIVKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPAPSVFL - >TraesCS2B02G202700.2
MASRDFLGRFGGEKGSSSDKAGGGAGEPDEVVELSLGLSLGGCFGANSGRDAKKPRLVRSSSLAAMYSLPTETEEERWRRREMQSLKRLQAKRKRLERRTSMNSGKSGGSSSRDDAQEPLYPSAFQLRRSVVDQGNTSSSMPEQGSADGAEAKSTSSMEISSDNNNNNNASNQNKSLPPPAPSPAGKLPNGIVKEQPPLRTLRSLTMRTTSTGDLRKSMMEDMPMVSSKVDGPNGKKIDGFLYKYRKGEEVRIVCVCHGNFLTPAEFVKHAGGGDVTNPLRHIVVNPAPSVFL