Information report for Rht23;q
Gene Details
|
|
Functional Descriptions
- Rht23 confers the free-threshing character and influences many other agronomically important traits.
- Rht23 (5Dq′) likely encodes a Q homeologue with pleiotropic effects on plant height and spike compactness.
- The mutant(Rht23) exhibits compact spike and dwarfness, and the mutated locus Rht23 was mapped to the distal of the long arm of chromosome 5D, where 5Dq was located.
- We proposed that a mutation within the miR172 target site in the 5Dq led to the dwarf and compact spike phenotype of the Rht23 mutant.
Functional Keywords
- dwarf , height , plant-height , spike , free-threshing , spike-compactness
Literature and News
- Rht23 (5Dq’) likely encodes a Q homeologue with pleiotropic effects on plant height and spike compactness. DOI: 10.1007/s00122-018-3115-5 ; PMID: 29855673
- A bacterial artificial chromosome contig spanning the major domestication locus Q in wheat and identification of a candidate gene. DOI: 10.1093/genetics/164.1.311 ; PMID: 12750342
Gene Resources
- NCBI ID: 123123462
- UniProt accessions: I2FGV8
- EnsemblPlants: TraesCS5D02G486600.1
- Gramene: TraesCS5D02G486600.1
- GO: GO:0003677 , GO:0003700 , GO:0005634
- OMA: SGFMTRQ
- ExpressionAtlas: TraesCS5D02G486600
- InterPro: IPR001471 , IPR016177 , IPR036955
- PANTHER: PTHR32467 , PTHR32467:SF67
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: I2FGV8
- SMR: I2FGV8
- CDD: cd00018
Sequences
cDNA Sequence
- >TraesCS5D02G486600.2
CTCCCATGCCATAGACGCGACCCCACTCATCGGTCGAGGTCGGTCGCTCCGAGGCGAGCGGCGGCGGGAGAGGCGGTGGGTCAAGCGAGTTTCGGAGGCGCCCGGCGGGCCTCGGATCGGAGATGGTGCTGGATCTCAATGTCGAGTCGCCGGCGGACTCCGGCACGTCCAGCTCGTCCGTGCTCAACTCCGCGGACGCCGGCGGCGGCGGCGGCTTCAGGTTCGGCCTGCTCGGGAGCCCCGATGATGACGACTGCTCCGGCGAGCCGGCGCCGGTCGGGTCCGGGTTCGTGACGAGGCAGCTCTTCCCCGCGTCGCCGCCCGGTCACGCGGGCGCGCCCGGGATGATGACGGGGCAGCTGGCACCGGCGCCGCCGATGGCCCCCGTGTGGCAGCCGCGGCGCGCCGAGGAGCTCGTGATGGCGCAGCGGGTGGCGCCCGCGAAGAAGACGCGGCGGGGGCCGAGGTCGCGGAGCTCGCAGTACAGGGGCGTCACCTTCTACCGCAGGACCGGCCGGTGGGAGTCGCACATCTGGGACTGCGGGAAGCAGGTCTACTTAGGTGGTTTCGACACTGCGCACGCGGCCGCAAGGGCCTACGATCGCGCGGCGATCAAGTTCCGGGGGCTGGAGGCCGACATCAACTTCAATCTGAGCGATTATGAGGAGGATTTGAAGCAGATGAGGAACTGGACCAAGGAGGAGTTCGTGCACATCCTCCGCCGCCAGAGCACGGGGTTCGCCAGGGGGAGCTCCAAGTACCGCGGCGTCACGCTCCACAAGTGCGGCCGCTGGGAGGCAAGGATGGGCCAGCTGCTCGGCAAGAAGTACATATATCTTGGCCTCTTTGACAGCGAAGTTGAAGCTGCAAGGGCGTACGACAGGGCGGCGATTCGCTTCAATGGGAGGGAAGCTGTGACTAACTTTGAGAGCAGCTCCTACAATGGGGATGCTCCACCCGACGCCGAAAATGAGGCAATTGTTGATGCTGATGCTCTTGACTTGGATCTACGGATGTCGCAACCTACCGCGCACGATCCCAAGCGGGACAACATCATCGCCGGCCTTCAGTTAACTTTTGATTCCCCTGAATCGTCAACCACAATGCTCTCTTCTCAGCCAATGAGCTCATCTTCTTCCCAGTGGCCTGTGCATCAACATGGCACGGCAGTAGCACCTCAGCAGCACCAGCGTTTGTACCCATCTGCTTGTCATGGCTTCTACCCGAACGTACAGGTGCAGGTGCAGGTGCAGGAGAGGCCCATGGAGCCAAGGCCCCCTGAGCCGCCGTCGTGCTTCCCCAGCTGGGGGTGGCAAGCGCAAGCCATGCCGCCGGGCTCCTCCCACTCGCCGTTGCTTTACGCTGCAGCATCATCAGGATTCTCTACCGCCGCCGGCGCGCACCCCGCCCCGCCGCCGCCGCCGTCGTACCCGGATCACCACCGGTTCTACTTCCCCCGCCCGCCGGACAACTAGCTCTCTCTCTCTCTCTCTCTGCTTGCTCGGCCATGGACGGTGGCCGACGAGCTTGTGTGTGTTGGAGGTGCTCCCGCCTCGTCGGTAACAGTTGTTGTGAATTAATCGGAGAGAGACACACGTTGCCAGGCCATGTGTGAGTGTGACTGGCTGAGGCTGGTTTCTCTCCGCGTCGGCGTCGCCATGATCAGGATCACGGGCATCATGGCTGCTCGTTATTAGATTCTCATGTATCCATTGCTCACGTTTTCCAAACAGTTGAAAAAACTTGGAAATTGTT - >TraesCS5D02G486600.1
CTCCCATGCCATAGACGCGACCCCACTCATCGGTCGAGGTCGGTCGCTCCGAGGCGAGCGGCGGCGGGAGAGGCGGTGGGTCAAGCGAGTTTCGGAGGCGCCCGGCGGGCCTCGGATCGGAGATGGTGCTGGATCTCAATGTCGAGTCGCCGGCGGACTCCGGCACGTCCAGCTCGTCCGTGCTCAACTCCGCGGACGCCGGCGGCGGCGGCGGCTTCAGGTTCGGCCTGCTCGGGAGCCCCGATGATGACGACTGCTCCGGCGAGCCGGCGCCGGTCGGGTCCGGGTTCGTGACGAGGCAGCTCTTCCCCGCGTCGCCGCCCGGTCACGCGGGCGCGCCCGGGATGATGACGGGGCAGCTGGCACCGGCGCCGCCGATGGCCCCCGTGTGGCAGCCGCGGCGCGCCGAGGAGCTCGTGATGGCGCAGCGGGTGGCGCCCGCGAAGAAGACGCGGCGGGGGCCGAGGTCGCGGAGCTCGCAGTACAGGGGCGTCACCTTCTACCGCAGGACCGGCCGGTGGGAGTCGCACATCTGGGACTGCGGGAAGCAGGTCTACTTAGGTGGTTTCGACACTGCGCACGCGGCCGCAAGGGCCTACGATCGCGCGGCGATCAAGTTCCGGGGGCTGGAGGCCGACATCAACTTCAATCTGAGCGATTATGAGGAGGATTTGAAGCAGATGAGGAACTGGACCAAGGAGGAGTTCGTGCACATCCTCCGCCGCCAGAGCACGGGGTTCGCCAGGGGGAGCTCCAAGTACCGCGGCGTCACGCTCCACAAGTGCGGCCGCTGGGAGGCAAGGATGGGCCAGCTGCTCGGCAAGAAGTACATATATCTTGGCCTCTTTGACAGCGAAGTTGAAGCTGCAAGGGCGTACGACAGGGCGGCGATTCGCTTCAATGGGAGGGAAGCTGTGACTAACTTTGAGAGCAGCTCCTACAATGGGGATGCTCCACCCGACGCCGAAAATGAGGCAATTGTTGATGCTGATGCTCTTGACTTGGATCTACGGATGTCGCAACCTACCGCGCACGATCCCAAGCGGGACAACATCATCGCCGGCCTTCAGTTAACTTTTGATTCCCCTGAATCGTCAACCACAATGCTCTCTTCTCAGCCAATGAGCTCATCTTCTTCCCAGTGGCCTGTGCATCAACATGGCACGGCAGTAGCACCTCAGCAGCACCAGCGTTTGTACCCATCTGCTTGTCATGGCTTCTACCCGAACGTACAGGTGCAGGTGCAGGTGCAGGAGAGGCCCATGGAGCCAAGGCCCCCTGAGCCGCCGTCGTGCTTCCCCAGCTGGGGGTGGCAAGCGCAAGCCATGCCGCCGGGCTCCTCCCACTCGCCGTTGCTTTACGCTGCAGCATCATCAGGATTCTCTACCGCCGCCGGCGCGCACCCCGCCCCGCCGCCGCCGCCGTCGTACCCGGATCACCACCGGTTCTACTTCCCCCGCCCGCCGGACAACTAGCTCTCTCTCTCTCTCTCTCTGCTTGCTCGGCCATGGACGGTGGCCGACGAGCTTGTGTGTGTTGGAGGTGCTCCCGCCTCGTCGGTAACAGTTGTTGTGAATTAATCGGAGAGAGACACACGTTGCCAGGCCATGTGTGAGTGTGACTGGCTGAGGCTGGTTTCTCTCCGCGTCGGCGTCGCCATGATCAGGATCACGGGCATCATGGCTGCTCGTTATTAGATTCTCATGTATCCATTGCTCACGTTTTCCAAACAGTTGAAAAAACTTGGAAATTGTT
CDS Sequence
- >TraesCS5D02G486600.2
ATGGTGCTGGATCTCAATGTCGAGTCGCCGGCGGACTCCGGCACGTCCAGCTCGTCCGTGCTCAACTCCGCGGACGCCGGCGGCGGCGGCGGCTTCAGGTTCGGCCTGCTCGGGAGCCCCGATGATGACGACTGCTCCGGCGAGCCGGCGCCGGTCGGGTCCGGGTTCGTGACGAGGCAGCTCTTCCCCGCGTCGCCGCCCGGTCACGCGGGCGCGCCCGGGATGATGACGGGGCAGCTGGCACCGGCGCCGCCGATGGCCCCCGTGTGGCAGCCGCGGCGCGCCGAGGAGCTCGTGATGGCGCAGCGGGTGGCGCCCGCGAAGAAGACGCGGCGGGGGCCGAGGTCGCGGAGCTCGCAGTACAGGGGCGTCACCTTCTACCGCAGGACCGGCCGGTGGGAGTCGCACATCTGGGACTGCGGGAAGCAGGTCTACTTAGGTGGTTTCGACACTGCGCACGCGGCCGCAAGGGCCTACGATCGCGCGGCGATCAAGTTCCGGGGGCTGGAGGCCGACATCAACTTCAATCTGAGCGATTATGAGGAGGATTTGAAGCAGATGAGGAACTGGACCAAGGAGGAGTTCGTGCACATCCTCCGCCGCCAGAGCACGGGGTTCGCCAGGGGGAGCTCCAAGTACCGCGGCGTCACGCTCCACAAGTGCGGCCGCTGGGAGGCAAGGATGGGCCAGCTGCTCGGCAAGAAGTACATATATCTTGGCCTCTTTGACAGCGAAGTTGAAGCTGCAAGGGCGTACGACAGGGCGGCGATTCGCTTCAATGGGAGGGAAGCTGTGACTAACTTTGAGAGCAGCTCCTACAATGGGGATGCTCCACCCGACGCCGAAAATGAGGCAATTGTTGATGCTGATGCTCTTGACTTGGATCTACGGATGTCGCAACCTACCGCGCACGATCCCAAGCGGGACAACATCATCGCCGGCCTTCAGTTAACTTTTGATTCCCCTGAATCGTCAACCACAATGCTCTCTTCTCAGCCAATGAGCTCATCTTCTTCCCAGTGGCCTGTGCATCAACATGGCACGGCAGTAGCACCTCAGCAGCACCAGCGTTTGTACCCATCTGCTTGTCATGGCTTCTACCCGAACGTACAGGTGCAGGTGCAGGTGCAGGAGAGGCCCATGGAGCCAAGGCCCCCTGAGCCGCCGTCGTGCTTCCCCAGCTGGGGGTGGCAAGCGCAAGCCATGCCGCCGGGCTCCTCCCACTCGCCGTTGCTTTACGCTGCAGCATCATCAGGATTCTCTACCGCCGCCGGCGCGCACCCCGCCCCGCCGCCGCCGCCGTCGTACCCGGATCACCACCGGTTCTACTTCCCCCGCCCGCCGGACAACTAG - >TraesCS5D02G486600.1
ATGGTGCTGGATCTCAATGTCGAGTCGCCGGCGGACTCCGGCACGTCCAGCTCGTCCGTGCTCAACTCCGCGGACGCCGGCGGCGGCGGCGGCTTCAGGTTCGGCCTGCTCGGGAGCCCCGATGATGACGACTGCTCCGGCGAGCCGGCGCCGGTCGGGTCCGGGTTCGTGACGAGGCAGCTCTTCCCCGCGTCGCCGCCCGGTCACGCGGGCGCGCCCGGGATGATGACGGGGCAGCTGGCACCGGCGCCGCCGATGGCCCCCGTGTGGCAGCCGCGGCGCGCCGAGGAGCTCGTGATGGCGCAGCGGGTGGCGCCCGCGAAGAAGACGCGGCGGGGGCCGAGGTCGCGGAGCTCGCAGTACAGGGGCGTCACCTTCTACCGCAGGACCGGCCGGTGGGAGTCGCACATCTGGGACTGCGGGAAGCAGGTCTACTTAGGTGGTTTCGACACTGCGCACGCGGCCGCAAGGGCCTACGATCGCGCGGCGATCAAGTTCCGGGGGCTGGAGGCCGACATCAACTTCAATCTGAGCGATTATGAGGAGGATTTGAAGCAGATGAGGAACTGGACCAAGGAGGAGTTCGTGCACATCCTCCGCCGCCAGAGCACGGGGTTCGCCAGGGGGAGCTCCAAGTACCGCGGCGTCACGCTCCACAAGTGCGGCCGCTGGGAGGCAAGGATGGGCCAGCTGCTCGGCAAGAAGTACATATATCTTGGCCTCTTTGACAGCGAAGTTGAAGCTGCAAGGGCGTACGACAGGGCGGCGATTCGCTTCAATGGGAGGGAAGCTGTGACTAACTTTGAGAGCAGCTCCTACAATGGGGATGCTCCACCCGACGCCGAAAATGAGGCAATTGTTGATGCTGATGCTCTTGACTTGGATCTACGGATGTCGCAACCTACCGCGCACGATCCCAAGCGGGACAACATCATCGCCGGCCTTCAGTTAACTTTTGATTCCCCTGAATCGTCAACCACAATGCTCTCTTCTCAGCCAATGAGCTCATCTTCTTCCCAGTGGCCTGTGCATCAACATGGCACGGCAGTAGCACCTCAGCAGCACCAGCGTTTGTACCCATCTGCTTGTCATGGCTTCTACCCGAACGTACAGGTGCAGGTGCAGGTGCAGGAGAGGCCCATGGAGCCAAGGCCCCCTGAGCCGCCGTCGTGCTTCCCCAGCTGGGGGTGGCAAGCGCAAGCCATGCCGCCGGGCTCCTCCCACTCGCCGTTGCTTTACGCTGCAGCATCATCAGGATTCTCTACCGCCGCCGGCGCGCACCCCGCCCCGCCGCCGCCGCCGTCGTACCCGGATCACCACCGGTTCTACTTCCCCCGCCCGCCGGACAACTAG
Protein Sequence
- >TraesCS5D02G486600.2
MVLDLNVESPADSGTSSSSVLNSADAGGGGGFRFGLLGSPDDDDCSGEPAPVGSGFVTRQLFPASPPGHAGAPGMMTGQLAPAPPMAPVWQPRRAEELVMAQRVAPAKKTRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLEADINFNLSDYEEDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDRAAIRFNGREAVTNFESSSYNGDAPPDAENEAIVDADALDLDLRMSQPTAHDPKRDNIIAGLQLTFDSPESSTTMLSSQPMSSSSSQWPVHQHGTAVAPQQHQRLYPSACHGFYPNVQVQVQVQERPMEPRPPEPPSCFPSWGWQAQAMPPGSSHSPLLYAAASSGFSTAAGAHPAPPPPPSYPDHHRFYFPRPPDN - >TraesCS5D02G486600.1
MVLDLNVESPADSGTSSSSVLNSADAGGGGGFRFGLLGSPDDDDCSGEPAPVGSGFVTRQLFPASPPGHAGAPGMMTGQLAPAPPMAPVWQPRRAEELVMAQRVAPAKKTRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLEADINFNLSDYEEDLKQMRNWTKEEFVHILRRQSTGFARGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDRAAIRFNGREAVTNFESSSYNGDAPPDAENEAIVDADALDLDLRMSQPTAHDPKRDNIIAGLQLTFDSPESSTTMLSSQPMSSSSSQWPVHQHGTAVAPQQHQRLYPSACHGFYPNVQVQVQVQERPMEPRPPEPPSCFPSWGWQAQAMPPGSSHSPLLYAAASSGFSTAAGAHPAPPPPPSYPDHHRFYFPRPPDN