Information report for IGS.gm_12_00206
Gene Details
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Functional Annotation
- Refseq: XP_005847106.1 — hypothetical protein CHLNCDRAFT_134820
- TrEMBL: E1ZGV3 — E1ZGV3_CHLVA; Uncharacterized protein
- STRING: XP_005847106.1 — (Chlorella variabilis)
- GO:0045893 — Biological Process — positive regulation of transcription, DNA-templated
- GO:0000166 — Molecular Function — nucleotide binding
- GO:0003700 — Molecular Function — transcription factor activity, sequence-specific DNA binding
- GO:0043565 — Molecular Function — sequence-specific DNA binding
Family Introduction
- Members of the Whirly family of proteins are found throughout the plant kingdom and are predicted to share the ability to bind to single-stranded DNA. Arabidopsis and potato Whirly orthologs act as transcription factors that regulate defense gene expression; the Arabidopsis Whirly protein AtWhy1 contributes to both basal and specific defense responses. Analysis of the crystal structure of potato StWhy1 has provided insight into the DNA-binding mechanism of this family of proteins, their mode of action and possible autoregulation. There is evidence to suggest that Whirly proteins might play roles in processes other than defense responses and could function in the chloroplast as well as in the nucleus.
Literature and News
Gene Resources
- SuperFamily: SSF54447
- Gene3D: G3DSA:2.30.31.10
- Pfam: PF08536
- InterPro: IPR009044 IPR013742
Sequences
CDS Sequence:
- >IGS.gm_12_00206|Chlorella_variabilis_NC64A|Whirly|IGS.gm_12_00206
ATGGCAGACGCAAAGAAGAACGATCCCCGCACGGTGTTCGTGCGGGGAATCGATGCCAGCGTCACAAACGAGCAGCTGCAAGAGTTTTTCAGCGAAGTTGGGCCCGTGAAGAACGCCTTCCTGGTCAGGAGGGGCAAGGATGGGCCGCACAGGGGCTTTGGCTTCGTGCAGTTCGCGGTGCAGGAGGATGCCGAGCGGGCGGCGGCAGAGGTGCCCGGCAAGGAGCTGGCGGGGCGTAAGCTCAAGGTGGAGGGTGCCGTGAAGCGTGCGCCGCTGGAAGAGCGGAAGAAGCGAAAGCAGTCAGGGACAGCAGCAGCACCCCAGCAGCAGCAGCAGCAGCAGCAGCATCCAGCAGCAGAAGTGGCGACGGCGCAGGCGCCCGCCGCCAAGAAGCCGCGCCCATCCAAGCCGGCCGGCAAGCCTAGCAGTGCGGCAGCAACAGCCGCAGAGGCCAAGCACAAGTGGCTGCGGACGGTTGCCATCGCGGGGCTGACCCCAGAGGCAGTGGACAGCGCCCTGCAGATGGCCAGGGCAGCCGGCGAGGTGGAGGAGGTGATCCGACCCATGCCCGACCAGCTGGGCGCGCAGTTCAAGCTGAGGAGGGACGGGTGCACCGGCGAGTCGCTGCTGGCTGTCTACAAGACTGTCAAGCAGGCCACCATGGCGGTGGAGCAGCTGCATGGGCAGGTGGCCGTTGCCGGCGGCGAGCCGGCTGCAAAGAAGCAAAAGAAGGGGGGCAGCAAGGCGGCAGAGGCAGGCGGCGGCGGCGCAGCAGGGTGCCGCGTGTGGGCGCGGCAGCTGTCTGGCGACGGGCTGCACCAGAAGCGCTGGCGCCTCATCGTGCGCAACCTGCCCTTCACGGCCAGCGAGGCCGACCTGCGGCAGGCCTTTGCGCCCGCCGGCTTTGTGTGGGAGCTGTCTCTGCCGCGCAGCGCCAGCGGGCGCGGCCGCGGCTTTGCCTTTGTGGGCTTCACCTGCAAGGCGCACGCGGAGCGAGGCATCAGGCTGGTCAACGCCACGGTGGTTGCGGGGCGGCCCGTGGCGGTGGACTGGGCGGTGGCCAAGGCGCAGTATGACACGGCGCAGCCAGAGCAGGAGGCAGGGGCGGCTGGCGAGGGTGGCACGGCGGGTGCCGGCGTGGCGGGCGGCAGCTTGAGGCAGCTGATGGGGATTGATGGCGTGGACAGCGACTCGGAGGATGATCAGGCTGGACCGCCGGCGCAGATGGGGCACGAAGGCGACGACGGCGAGGCGGCGGCACCTGTGGAGCCGGAGCAGGAGCGGCGCATGCTGGCCAGCGTGATTGACGGCATCCTGGACGGCGGCGGTGAGGAGGACGAGCCTGAGGCGGCAGCAGAAGGGTTGAGTGAGTCGGAGGAGGAAGATGGCTCTGAGGATGAGGACGGCGATGAGGCTGCCCAGGAGGAGAGCGACAGCGAAGAGGGGGAGGAGGAGGAGGAGGAGGCGGACGAGGAGGCGCCTGCTGCCAGCGTGGCCGCAGCCGACCCATTCAGCCGCAGCCAGCTGCAGAAGAAGGCCGAGGCGGCGGCGACCGCGGCGGCGGCGGTGGCGCCGGGTGCCGACCAGGGTCGCCAGCGAGCTGAGCCAGAGGCCGACGCCACCGTGTTCATCCGCGGCCTGCCGCTGGATGTGGGCAAGGAGCAGGTCTTCCTCAAGATGAAGGTGTACGGCCCCGTGCGCTCCTGCCGCCTGGTGTTGGACAAGGACTCGGGCAAGCTCAAGGGCACCGCCTTTGTGGACTTCTACCGGCGTGCATCGGCGCAGGCGGCGTCAGACGCGTGCGCCAAGGGCAGGCGCAAGGAGGGCCCCGGAGTGGTGATTGGGGGGCGTGTGGCGGACGTCGACCTGGCTGTGGGGCAGGAGGAGGCGCGGGCGCTGGCGGTGGCAAAGGCGGCAGAGCGTGGCCCCCGCGACAGCCGCCGCCTGGCTCTGGCCAAGGAGGGCCAGATTGTGGAGGGCTCCCCCGCCTGGGAGGACATGTCGGCGGGAGACAGAGCCAAGCGCAAGCGCGCAGCAGAGGAGAAGAAGCTGAAGCTGAAGAGCCCGAACTTTGTGGTCAGCGACTGCCGCCTCAGCGTGCGCAACGTGCCCACCGCCTGGACAGAGAAGCAGCTGAAGCAGGCCTTCATCGCAGCGGTCAAGGAGCGCGCCAGCAAGGCGCAGCCGCAGGTGAAGCAGGTGAAGATTCTGATGGATGAGGAGCGGCTGGGCCCGGATGGCACGCCGCGCAGCAAGGGCATCGCCTTTGTGGAGTTCACGGAGCACGAGCATGCGCTGTGTGCGCTGCGCCAGCTCAACAACAACCCCGCCGCCTTCAGCAAGGAGCGGCGCCCCATTGTGGAGTTTGCTCTGGAGAATGTGAAGACGCTAAAGCTGCGGGAGACCAAGCTGGGCAGATCCAAGCAGCCGCGAGAGCAGCAGCAGCACCAGCAGCAACAGGAGCGGCAGGGAGCGGGAGGTGCTGCTTCGGGCACGGGTGGAAGCCAGCAGCAGCAGCACCACCAGCAGGGTGAGAAGGACGGGGCGGAGGCGCCTGAGGCAAAGTCCAAACGGAAGCTGCGCAAGGAGCGGCGGCTGATGCTGCAGGAGCGGCGCAAGGAGCAGAAGCAGCAGGAGGCAAGCGGAGGCGGGGCGGCGGCGGCCAACGGCACGCCAGCAAGCTGCGAGAAGAGCCGGTCAGCGAAGCGGCGCGAGCTGCGCAAGCGCAGGCAGGAAGGGCAGCAGGGCGTGGCCCCCGCAGCAGCGGCGCCGGCAGTCAAGACGGCACCTGCCACCGCCGCTGCAGCCAAGCCCGCCAAGCCCGCGGCTGGTGCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCCACGTTTGGGGGTGAACAGCAGGGCGGCCAAGGTGGCCGCGACCTCTCAGCAGGAGCAGCAGACGCAGCGGCGGAAGCGTTCTGCCGACGAGCTCATTGACAAGCTGGCGGAGGGACCCAAAGGCAAGCGCGAGCTGCGGGCGAGGAAGCAGCGCAAGAAGGAGCAGACTGACAGCGTGGACCAGCTGGCGCGCCAATACCTCACCAAGTTCTTCTCGGATGCGCCCGCTGGGGCTGGCAAGGCTGGCAAGGGCAAAGGCGGCAGCAGCGGCAACGCGGGAGCAGCGGCCGGCCAGCGCTCGGCGCTCAAGCGCTGGTTTGAGGCGCAGCCCCAGCAGCGTCGCGCATCCCAGCAGCTGCGGGCGCAGTCCACCGCCGCGCCGCCCTACTGGGACGACGATAGCAAGCCCAGAGTCAACGTGTACTCAGACTACACCATCTACAAGGGCAAGGCCGCCATGGCGATCAAGGTGATCAAGCCCACCTGGGAGTCCATTGGCAGCGGCCTGAAGATCAGCCGGGAGGGCACGCTGCTGCTGGAGTTTGCCGCCAGCGTCGGGCCGCAGCAGTATGACTGGACCAAAAAGGAGACATTTGGGCTGAGCGCGCTCGAGTGTGCGGCGGTGCTGGAGGCGGCGGACGCGCGGCAATCCTTTGAGGCGCTGCACGACCCCAACAAGGGCAGGGGAGGAGAGGGCACCGTGTACAAGAAGTTCAACATGCGGCCCGCCCCTGACAAGGGCTGGTTCTTCAGCATCGCCTCCACCGCCAGCGGCAGCCAGGTCAACATCTCCTGCAACGTCAGCGACGCGGAGCTGCGCCTGGTCACGAGGGTGTTTGATTTTGTGATTCCACGCCTGCTGGGCTTCGACGAGCACTTTGCGGGCGCGCCGTCTGTGGTGATGCCCGAGAGCGCTGCGGCGGCAGCACCAGCAGAGGCTGCCGCTCCCTTTTGA
Protein Sequence:
- >IGS.gm_12_00206|Chlorella_variabilis_NC64A|Whirly|IGS.gm_12_00206
MADAKKNDPRTVFVRGIDASVTNEQLQEFFSEVGPVKNAFLVRRGKDGPHRGFGFVQFAVQEDAERAAAEVPGKELAGRKLKVEGAVKRAPLEERKKRKQSGTAAAPQQQQQQQQHPAAEVATAQAPAAKKPRPSKPAGKPSSAAATAAEAKHKWLRTVAIAGLTPEAVDSALQMARAAGEVEEVIRPMPDQLGAQFKLRRDGCTGESLLAVYKTVKQATMAVEQLHGQVAVAGGEPAAKKQKKGGSKAAEAGGGGAAGCRVWARQLSGDGLHQKRWRLIVRNLPFTASEADLRQAFAPAGFVWELSLPRSASGRGRGFAFVGFTCKAHAERGIRLVNATVVAGRPVAVDWAVAKAQYDTAQPEQEAGAAGEGGTAGAGVAGGSLRQLMGIDGVDSDSEDDQAGPPAQMGHEGDDGEAAAPVEPEQERRMLASVIDGILDGGGEEDEPEAAAEGLSESEEEDGSEDEDGDEAAQEESDSEEGEEEEEEADEEAPAASVAAADPFSRSQLQKKAEAAATAAAAVAPGADQGRQRAEPEADATVFIRGLPLDVGKEQVFLKMKVYGPVRSCRLVLDKDSGKLKGTAFVDFYRRASAQAASDACAKGRRKEGPGVVIGGRVADVDLAVGQEEARALAVAKAAERGPRDSRRLALAKEGQIVEGSPAWEDMSAGDRAKRKRAAEEKKLKLKSPNFVVSDCRLSVRNVPTAWTEKQLKQAFIAAVKERASKAQPQVKQVKILMDEERLGPDGTPRSKGIAFVEFTEHEHALCALRQLNNNPAAFSKERRPIVEFALENVKTLKLRETKLGRSKQPREQQQHQQQQERQGAGGAASGTGGSQQQQHHQQGEKDGAEAPEAKSKRKLRKERRLMLQERRKEQKQQEASGGGAAAANGTPASCEKSRSAKRRELRKRRQEGQQGVAPAAAAPAVKTAPATAAAAKPAKPAAGAKQQQQQQQQQRPRLGVNSRAAKVAATSQQEQQTQRRKRSADELIDKLAEGPKGKRELRARKQRKKEQTDSVDQLARQYLTKFFSDAPAGAGKAGKGKGGSSGNAGAAAGQRSALKRWFEAQPQQRRASQQLRAQSTAAPPYWDDDSKPRVNVYSDYTIYKGKAAMAIKVIKPTWESIGSGLKISREGTLLLEFAASVGPQQYDWTKKETFGLSALECAAVLEAADARQSFEALHDPNKGRGGEGTVYKKFNMRPAPDKGWFFSIASTASGSQVNISCNVSDAELRLVTRVFDFVIPRLLGFDEHFAGAPSVVMPESAAAAAPAEAAAPF*